Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 HLA-V-202ENST00000446817 847 ntBASIC35.43■■■■□ 3.26
BRCA1P38398 MLEC-202ENST00000412616 841 ntTSL 3 BASIC35.43■■■■□ 3.26
BRCA1P38398 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC35.42■■■■□ 3.26
BRCA1P38398 MVK-208ENST00000539696 608 ntTSL 5 BASIC35.41■■■■□ 3.26
BRCA1P38398 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC35.41■■■■□ 3.26
BRCA1P38398 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC35.4■■■■□ 3.26
BRCA1P38398 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC35.4■■■■□ 3.26
BRCA1P38398 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC35.4■■■■□ 3.26
BRCA1P38398 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC35.37■■■■□ 3.25
BRCA1P38398 ABHD17AP4-201ENST00000411545 909 ntBASIC35.37■■■■□ 3.25
BRCA1P38398 DUX4L28-201ENST00000623687 678 ntBASIC35.37■■■■□ 3.25
BRCA1P38398 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC35.36■■■■□ 3.25
BRCA1P38398 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC35.35■■■■□ 3.25
BRCA1P38398 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC35.33■■■■□ 3.25
BRCA1P38398 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC35.31■■■■□ 3.24
BRCA1P38398 EBPL-202ENST00000378268 680 ntTSL 3 BASIC35.3■■■■□ 3.24
BRCA1P38398 MIR3665-201ENST00000578708 105 ntBASIC35.3■■■■□ 3.24
BRCA1P38398 AC087741.3-201ENST00000624270 1347 ntBASIC35.3■■■■□ 3.24
BRCA1P38398 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC35.29■■■■□ 3.24
BRCA1P38398 PVT1-219ENST00000523427 938 ntTSL 3 BASIC35.26■■■■□ 3.24
BRCA1P38398 AC044849.2-201ENST00000606596 710 ntBASIC35.26■■■■□ 3.23
BRCA1P38398 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC35.24■■■■□ 3.23
BRCA1P38398 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC35.24■■■■□ 3.23
BRCA1P38398 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC35.23■■■■□ 3.23
BRCA1P38398 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC35.22■■■■□ 3.23
BRCA1P38398 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC35.21■■■■□ 3.23
BRCA1P38398 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC35.21■■■■□ 3.23
BRCA1P38398 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC35.2■■■■□ 3.22
BRCA1P38398 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC35.18■■■■□ 3.22
BRCA1P38398 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC35.18■■■■□ 3.22
BRCA1P38398 MBP-237ENST00000579129 1052 ntTSL 5 BASIC35.17■■■■□ 3.22
BRCA1P38398 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC35.16■■■■□ 3.22
BRCA1P38398 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC35.16■■■■□ 3.22
BRCA1P38398 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC35.13■■■■□ 3.21
BRCA1P38398 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC35.13■■■■□ 3.21
BRCA1P38398 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC35.13■■■■□ 3.21
BRCA1P38398 ILK-212ENST00000532063 1617 ntTSL 2 BASIC35.13■■■■□ 3.21
BRCA1P38398 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC35.12■■■■□ 3.21
BRCA1P38398 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC35.1■■■■□ 3.21
BRCA1P38398 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC35.06■■■■□ 3.2
BRCA1P38398 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC35.03■■■■□ 3.2
BRCA1P38398 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC35.01■■■■□ 3.2
BRCA1P38398 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC35.01■■■■□ 3.2
BRCA1P38398 AC005559.1-201ENST00000589661 871 ntBASIC35■■■■□ 3.19
BRCA1P38398 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC34.99■■■■□ 3.19
BRCA1P38398 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC34.98■■■■□ 3.19
BRCA1P38398 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC34.94■■■■□ 3.18
BRCA1P38398 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC34.93■■■■□ 3.18
BRCA1P38398 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC34.93■■■■□ 3.18
BRCA1P38398 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC34.92■■■■□ 3.18
BRCA1P38398 MIR762-201ENST00000390236 83 ntBASIC34.91■■■■□ 3.18
BRCA1P38398 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC34.91■■■■□ 3.18
BRCA1P38398 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC34.91■■■■□ 3.18
BRCA1P38398 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC34.91■■■■□ 3.18
BRCA1P38398 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC34.91■■■■□ 3.18
BRCA1P38398 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC34.9■■■■□ 3.18
BRCA1P38398 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC34.9■■■■□ 3.18
BRCA1P38398 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC34.9■■■■□ 3.18
BRCA1P38398 CHML-205ENST00000638160 705 ntTSL 3 BASIC34.9■■■■□ 3.18
BRCA1P38398 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC34.88■■■■□ 3.17
BRCA1P38398 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC34.88■■■■□ 3.17
BRCA1P38398 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC34.87■■■■□ 3.17
BRCA1P38398 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC34.86■■■■□ 3.17
BRCA1P38398 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC34.85■■■■□ 3.17
BRCA1P38398 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC34.79■■■■□ 3.16
BRCA1P38398 RPS2-202ENST00000526522 924 ntTSL 2 BASIC34.79■■■■□ 3.16
BRCA1P38398 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC34.78■■■■□ 3.16
BRCA1P38398 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC34.76■■■■□ 3.16
BRCA1P38398 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC34.75■■■■□ 3.15
BRCA1P38398 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC34.74■■■■□ 3.15
BRCA1P38398 DENR-202ENST00000455982 1052 ntTSL 5 BASIC34.74■■■■□ 3.15
BRCA1P38398 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC34.73■■■■□ 3.15
BRCA1P38398 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC34.72■■■■□ 3.15
BRCA1P38398 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC34.71■■■■□ 3.15
BRCA1P38398 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC34.71■■■■□ 3.15
BRCA1P38398 BOD1-206ENST00000480951 814 ntTSL 2 BASIC34.71■■■■□ 3.15
BRCA1P38398 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC34.7■■■■□ 3.15
BRCA1P38398 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC34.7■■■■□ 3.14
BRCA1P38398 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC34.69■■■■□ 3.14
BRCA1P38398 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC34.68■■■■□ 3.14
BRCA1P38398 HGH1-207ENST00000628266 258 ntTSL 5 BASIC34.68■■■■□ 3.14
BRCA1P38398 ZNRF2P2-203ENST00000454624 420 ntBASIC34.67■■■■□ 3.14
BRCA1P38398 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC34.67■■■■□ 3.14
BRCA1P38398 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC34.67■■■■□ 3.14
BRCA1P38398 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC34.64■■■■□ 3.14
BRCA1P38398 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC34.64■■■■□ 3.14
BRCA1P38398 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC34.64■■■■□ 3.14
BRCA1P38398 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC34.62■■■■□ 3.13
BRCA1P38398 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC34.61■■■■□ 3.13
BRCA1P38398 MIR4449-201ENST00000578365 66 ntBASIC34.6■■■■□ 3.13
BRCA1P38398 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC34.58■■■■□ 3.13
BRCA1P38398 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC34.58■■■■□ 3.13
BRCA1P38398 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC34.56■■■■□ 3.12
BRCA1P38398 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC34.56■■■■□ 3.12
BRCA1P38398 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC34.56■■■■□ 3.12
BRCA1P38398 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC34.56■■■■□ 3.12
BRCA1P38398 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC34.52■■■■□ 3.12
BRCA1P38398 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC34.5■■■■□ 3.11
BRCA1P38398 RPS2-209ENST00000529806 993 ntTSL 3 BASIC34.5■■■■□ 3.11
BRCA1P38398 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC34.5■■■■□ 3.11
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms