Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC34.18■■■■□ 3.06
COL1A1P02452 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC34.17■■■■□ 3.06
COL1A1P02452 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC34.17■■■■□ 3.06
COL1A1P02452 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC34.16■■■■□ 3.06
COL1A1P02452 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC34.16■■■■□ 3.06
COL1A1P02452 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC34.16■■■■□ 3.06
COL1A1P02452 RPS2P35-201ENST00000443417 897 ntBASIC34.15■■■■□ 3.06
COL1A1P02452 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC34.14■■■■□ 3.06
COL1A1P02452 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC34.14■■■■□ 3.06
COL1A1P02452 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC34.14■■■■□ 3.06
COL1A1P02452 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC34.14■■■■□ 3.06
COL1A1P02452 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC34.11■■■■□ 3.05
COL1A1P02452 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC34.1■■■■□ 3.05
COL1A1P02452 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC34.1■■■■□ 3.05
COL1A1P02452 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC34.07■■■■□ 3.05
COL1A1P02452 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC34.04■■■■□ 3.04
COL1A1P02452 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC34.03■■■■□ 3.04
COL1A1P02452 AL133380.1-201ENST00000506013 324 ntBASIC34.01■■■■□ 3.03
COL1A1P02452 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC34■■■■□ 3.03
COL1A1P02452 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC33.97■■■■□ 3.03
COL1A1P02452 CAHM-201ENST00000604200 896 ntBASIC33.95■■■■□ 3.03
COL1A1P02452 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC33.95■■■■□ 3.02
COL1A1P02452 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC33.93■■■■□ 3.02
COL1A1P02452 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC33.92■■■■□ 3.02
COL1A1P02452 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC33.91■■■■□ 3.02
COL1A1P02452 AL162393.1-201ENST00000437852 946 ntBASIC33.87■■■■□ 3.01
COL1A1P02452 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC33.86■■■■□ 3.01
COL1A1P02452 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC33.86■■■■□ 3.01
COL1A1P02452 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC33.86■■■■□ 3.01
COL1A1P02452 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC33.85■■■■□ 3.01
COL1A1P02452 AL391121.1-201ENST00000607967 1349 ntBASIC33.83■■■■□ 3.01
COL1A1P02452 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC33.83■■■■□ 3.01
COL1A1P02452 AP006261.1-201ENST00000584783 668 ntBASIC33.82■■■■□ 3
COL1A1P02452 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC33.81■■■■□ 3
COL1A1P02452 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC33.81■■■■□ 3
COL1A1P02452 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC33.8■■■■□ 3
COL1A1P02452 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC33.8■■■■□ 3
COL1A1P02452 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC33.79■■■■□ 3
COL1A1P02452 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC33.78■■■■□ 3
COL1A1P02452 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC33.78■■■■□ 3
COL1A1P02452 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC33.77■■■■□ 3
COL1A1P02452 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC33.77■■■■□ 3
COL1A1P02452 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC33.77■■■■□ 3
COL1A1P02452 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC33.76■■■■□ 3
COL1A1P02452 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC33.76■■■■□ 3
COL1A1P02452 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC33.74■■■□□ 2.99
COL1A1P02452 NRG1-221ENST00000614767 762 ntTSL 5 BASIC33.74■■■□□ 2.99
COL1A1P02452 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC33.73■■■□□ 2.99
COL1A1P02452 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC33.68■■■□□ 2.98
COL1A1P02452 HNRNPLP2-201ENST00000568980 1570 ntBASIC33.67■■■□□ 2.98
COL1A1P02452 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC33.65■■■□□ 2.98
COL1A1P02452 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC33.63■■■□□ 2.97
COL1A1P02452 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC33.62■■■□□ 2.97
COL1A1P02452 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC33.61■■■□□ 2.97
COL1A1P02452 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC33.6■■■□□ 2.97
COL1A1P02452 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC33.6■■■□□ 2.97
COL1A1P02452 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC33.6■■■□□ 2.97
COL1A1P02452 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC33.57■■■□□ 2.97
COL1A1P02452 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC33.56■■■□□ 2.96
COL1A1P02452 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC33.55■■■□□ 2.96
COL1A1P02452 EBPL-202ENST00000378268 680 ntTSL 3 BASIC33.55■■■□□ 2.96
COL1A1P02452 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC33.54■■■□□ 2.96
COL1A1P02452 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC33.54■■■□□ 2.96
COL1A1P02452 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC33.5■■■□□ 2.95
COL1A1P02452 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC33.5■■■□□ 2.95
COL1A1P02452 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC33.5■■■□□ 2.95
COL1A1P02452 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC33.5■■■□□ 2.95
COL1A1P02452 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC33.5■■■□□ 2.95
COL1A1P02452 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC33.5■■■□□ 2.95
COL1A1P02452 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC33.5■■■□□ 2.95
COL1A1P02452 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC33.49■■■□□ 2.95
COL1A1P02452 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC33.48■■■□□ 2.95
COL1A1P02452 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC33.48■■■□□ 2.95
COL1A1P02452 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC33.47■■■□□ 2.95
COL1A1P02452 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC33.47■■■□□ 2.95
COL1A1P02452 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC33.47■■■□□ 2.95
COL1A1P02452 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC33.45■■■□□ 2.95
COL1A1P02452 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC33.45■■■□□ 2.95
COL1A1P02452 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC33.45■■■□□ 2.94
COL1A1P02452 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC33.43■■■□□ 2.94
COL1A1P02452 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC33.43■■■□□ 2.94
COL1A1P02452 MIR3665-201ENST00000578708 105 ntBASIC33.42■■■□□ 2.94
COL1A1P02452 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC33.41■■■□□ 2.94
COL1A1P02452 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC33.41■■■□□ 2.94
COL1A1P02452 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC33.41■■■□□ 2.94
COL1A1P02452 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC33.4■■■□□ 2.94
COL1A1P02452 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC33.4■■■□□ 2.94
COL1A1P02452 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC33.4■■■□□ 2.94
COL1A1P02452 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC33.39■■■□□ 2.94
COL1A1P02452 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC33.38■■■□□ 2.93
COL1A1P02452 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC33.38■■■□□ 2.93
COL1A1P02452 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC33.37■■■□□ 2.93
COL1A1P02452 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC33.37■■■□□ 2.93
COL1A1P02452 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC33.36■■■□□ 2.93
COL1A1P02452 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC33.34■■■□□ 2.93
COL1A1P02452 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC33.33■■■□□ 2.93
COL1A1P02452 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC33.31■■■□□ 2.92
COL1A1P02452 WASH5P-204ENST00000632292 975 ntBASIC33.31■■■□□ 2.92
COL1A1P02452 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC33.3■■■□□ 2.92
COL1A1P02452 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC33.3■■■□□ 2.92
Retrieved 100 of 98,524 protein–RNA pairs in 14.7 ms