Protein–RNA interactions for Protein: A6NJ46

NKX6-3, Homeobox protein Nkx-6.3, humanhuman

Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX6-3A6NJ46 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
NKX6-3A6NJ46 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC23.25■■□□□ 1.31
NKX6-3A6NJ46 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
NKX6-3A6NJ46 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC23.24■■□□□ 1.31
NKX6-3A6NJ46 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
NKX6-3A6NJ46 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC23.24■■□□□ 1.31
NKX6-3A6NJ46 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
NKX6-3A6NJ46 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC23.21■■□□□ 1.31
NKX6-3A6NJ46 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
NKX6-3A6NJ46 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC23.2■■□□□ 1.3
NKX6-3A6NJ46 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC23.19■■□□□ 1.3
NKX6-3A6NJ46 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
NKX6-3A6NJ46 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
NKX6-3A6NJ46 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC23.17■■□□□ 1.3
NKX6-3A6NJ46 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC23.17■■□□□ 1.3
NKX6-3A6NJ46 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
NKX6-3A6NJ46 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
NKX6-3A6NJ46 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC23.16■■□□□ 1.3
NKX6-3A6NJ46 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
NKX6-3A6NJ46 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
NKX6-3A6NJ46 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
NKX6-3A6NJ46 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
NKX6-3A6NJ46 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC23.15■■□□□ 1.3
NKX6-3A6NJ46 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC23.14■■□□□ 1.3
NKX6-3A6NJ46 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.3
NKX6-3A6NJ46 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC23.14■■□□□ 1.29
NKX6-3A6NJ46 KLF16-203ENST00000592313 508 ntTSL 3 BASIC23.12■■□□□ 1.29
NKX6-3A6NJ46 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC23.11■■□□□ 1.29
NKX6-3A6NJ46 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC23.1■■□□□ 1.29
NKX6-3A6NJ46 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC23.1■■□□□ 1.29
NKX6-3A6NJ46 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
NKX6-3A6NJ46 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
NKX6-3A6NJ46 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
NKX6-3A6NJ46 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
NKX6-3A6NJ46 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC23.08■■□□□ 1.29
NKX6-3A6NJ46 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC23.07■■□□□ 1.28
NKX6-3A6NJ46 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC23.07■■□□□ 1.28
NKX6-3A6NJ46 RARRES2P7-201ENST00000567349 469 ntBASIC23.06■■□□□ 1.28
NKX6-3A6NJ46 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC23.03■■□□□ 1.28
NKX6-3A6NJ46 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
NKX6-3A6NJ46 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC23.01■■□□□ 1.27
NKX6-3A6NJ46 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC23.01■■□□□ 1.27
NKX6-3A6NJ46 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
NKX6-3A6NJ46 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC23■■□□□ 1.27
NKX6-3A6NJ46 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
NKX6-3A6NJ46 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
NKX6-3A6NJ46 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
NKX6-3A6NJ46 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
NKX6-3A6NJ46 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
NKX6-3A6NJ46 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC22.96■■□□□ 1.27
NKX6-3A6NJ46 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC22.95■■□□□ 1.26
NKX6-3A6NJ46 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC22.95■■□□□ 1.26
NKX6-3A6NJ46 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
NKX6-3A6NJ46 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC22.94■■□□□ 1.26
NKX6-3A6NJ46 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC22.93■■□□□ 1.26
NKX6-3A6NJ46 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
NKX6-3A6NJ46 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC22.92■■□□□ 1.26
NKX6-3A6NJ46 SETD8P1-201ENST00000623146 1180 ntBASIC22.91■■□□□ 1.26
NKX6-3A6NJ46 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC22.89■■□□□ 1.25
NKX6-3A6NJ46 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
NKX6-3A6NJ46 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC22.88■■□□□ 1.25
NKX6-3A6NJ46 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC22.88■■□□□ 1.25
NKX6-3A6NJ46 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC22.87■■□□□ 1.25
NKX6-3A6NJ46 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
NKX6-3A6NJ46 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC22.87■■□□□ 1.25
NKX6-3A6NJ46 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC22.87■■□□□ 1.25
NKX6-3A6NJ46 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
NKX6-3A6NJ46 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
NKX6-3A6NJ46 AC120057.4-201ENST00000624722 1615 ntBASIC22.86■■□□□ 1.25
NKX6-3A6NJ46 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
NKX6-3A6NJ46 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC22.84■■□□□ 1.25
NKX6-3A6NJ46 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
NKX6-3A6NJ46 AL133380.1-201ENST00000506013 324 ntBASIC22.83■■□□□ 1.25
NKX6-3A6NJ46 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
NKX6-3A6NJ46 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
NKX6-3A6NJ46 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC22.82■■□□□ 1.24
NKX6-3A6NJ46 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
NKX6-3A6NJ46 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
NKX6-3A6NJ46 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC22.81■■□□□ 1.24
NKX6-3A6NJ46 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
NKX6-3A6NJ46 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC22.79■■□□□ 1.24
NKX6-3A6NJ46 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
NKX6-3A6NJ46 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC22.79■■□□□ 1.24
NKX6-3A6NJ46 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC22.79■■□□□ 1.24
NKX6-3A6NJ46 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
NKX6-3A6NJ46 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
NKX6-3A6NJ46 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC22.78■■□□□ 1.24
NKX6-3A6NJ46 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
NKX6-3A6NJ46 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
NKX6-3A6NJ46 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
NKX6-3A6NJ46 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
NKX6-3A6NJ46 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
NKX6-3A6NJ46 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC22.74■■□□□ 1.23
NKX6-3A6NJ46 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
NKX6-3A6NJ46 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
NKX6-3A6NJ46 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC22.74■■□□□ 1.23
NKX6-3A6NJ46 AC097358.2-201ENST00000607541 1159 ntBASIC22.73■■□□□ 1.23
NKX6-3A6NJ46 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
NKX6-3A6NJ46 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC22.73■■□□□ 1.23
NKX6-3A6NJ46 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms