Protein–RNA interactions for Protein: A0A0B4J268

TRAV4, T-cell receptor alpha variable 4 (Fragment), humanhuman

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV4A0A0B4J268 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
TRAV4A0A0B4J268 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
TRAV4A0A0B4J268 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
TRAV4A0A0B4J268 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC19.84■□□□□ 0.77
TRAV4A0A0B4J268 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC19.84■□□□□ 0.77
TRAV4A0A0B4J268 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRAV4A0A0B4J268 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRAV4A0A0B4J268 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
TRAV4A0A0B4J268 DYNLL1-208ENST00000550178 581 ntBASIC19.83■□□□□ 0.77
TRAV4A0A0B4J268 ST7-205ENST00000393446 2114 ntTSL 5 BASIC19.81■□□□□ 0.76
TRAV4A0A0B4J268 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRAV4A0A0B4J268 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
TRAV4A0A0B4J268 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRAV4A0A0B4J268 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRAV4A0A0B4J268 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRAV4A0A0B4J268 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
TRAV4A0A0B4J268 ST7-202ENST00000323984 2142 ntTSL 5 BASIC19.79■□□□□ 0.76
TRAV4A0A0B4J268 ST7-207ENST00000393449 2127 ntTSL 5 BASIC19.79■□□□□ 0.76
TRAV4A0A0B4J268 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
TRAV4A0A0B4J268 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRAV4A0A0B4J268 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRAV4A0A0B4J268 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
TRAV4A0A0B4J268 AP002365.1-201ENST00000603448 772 ntBASIC19.77■□□□□ 0.76
TRAV4A0A0B4J268 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
TRAV4A0A0B4J268 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC19.76■□□□□ 0.75
TRAV4A0A0B4J268 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC19.76■□□□□ 0.75
TRAV4A0A0B4J268 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC19.76■□□□□ 0.75
TRAV4A0A0B4J268 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TRAV4A0A0B4J268 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
TRAV4A0A0B4J268 EBPL-203ENST00000378270 579 ntTSL 2 BASIC19.75■□□□□ 0.75
TRAV4A0A0B4J268 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC19.75■□□□□ 0.75
TRAV4A0A0B4J268 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
TRAV4A0A0B4J268 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
TRAV4A0A0B4J268 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
TRAV4A0A0B4J268 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
TRAV4A0A0B4J268 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC19.72■□□□□ 0.75
TRAV4A0A0B4J268 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRAV4A0A0B4J268 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRAV4A0A0B4J268 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC19.7■□□□□ 0.74
TRAV4A0A0B4J268 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TRAV4A0A0B4J268 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRAV4A0A0B4J268 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC19.69■□□□□ 0.74
TRAV4A0A0B4J268 AL031258.1-201ENST00000623562 325 ntBASIC19.69■□□□□ 0.74
TRAV4A0A0B4J268 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
TRAV4A0A0B4J268 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC19.68■□□□□ 0.74
TRAV4A0A0B4J268 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TRAV4A0A0B4J268 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRAV4A0A0B4J268 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRAV4A0A0B4J268 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRAV4A0A0B4J268 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRAV4A0A0B4J268 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRAV4A0A0B4J268 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRAV4A0A0B4J268 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC19.66■□□□□ 0.74
TRAV4A0A0B4J268 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC19.65■□□□□ 0.74
TRAV4A0A0B4J268 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
TRAV4A0A0B4J268 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRAV4A0A0B4J268 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRAV4A0A0B4J268 AC120057.4-201ENST00000624722 1615 ntBASIC19.63■□□□□ 0.73
TRAV4A0A0B4J268 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRAV4A0A0B4J268 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
TRAV4A0A0B4J268 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRAV4A0A0B4J268 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
TRAV4A0A0B4J268 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRAV4A0A0B4J268 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC19.62■□□□□ 0.73
TRAV4A0A0B4J268 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TRAV4A0A0B4J268 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC19.61■□□□□ 0.73
TRAV4A0A0B4J268 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRAV4A0A0B4J268 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC19.6■□□□□ 0.73
TRAV4A0A0B4J268 AL161658.1-201ENST00000623641 1967 ntBASIC19.6■□□□□ 0.73
TRAV4A0A0B4J268 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC19.59■□□□□ 0.73
TRAV4A0A0B4J268 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC19.59■□□□□ 0.73
TRAV4A0A0B4J268 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC19.58■□□□□ 0.73
TRAV4A0A0B4J268 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC19.57■□□□□ 0.72
TRAV4A0A0B4J268 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
TRAV4A0A0B4J268 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TRAV4A0A0B4J268 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC19.56■□□□□ 0.72
TRAV4A0A0B4J268 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
TRAV4A0A0B4J268 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TRAV4A0A0B4J268 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC19.55■□□□□ 0.72
TRAV4A0A0B4J268 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TRAV4A0A0B4J268 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
TRAV4A0A0B4J268 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRAV4A0A0B4J268 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC19.53■□□□□ 0.72
TRAV4A0A0B4J268 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
TRAV4A0A0B4J268 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
TRAV4A0A0B4J268 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
TRAV4A0A0B4J268 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC19.52■□□□□ 0.72
TRAV4A0A0B4J268 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRAV4A0A0B4J268 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
TRAV4A0A0B4J268 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
TRAV4A0A0B4J268 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC19.46■□□□□ 0.71
TRAV4A0A0B4J268 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRAV4A0A0B4J268 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRAV4A0A0B4J268 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
TRAV4A0A0B4J268 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
TRAV4A0A0B4J268 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC19.45■□□□□ 0.7
TRAV4A0A0B4J268 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC19.45■□□□□ 0.7
TRAV4A0A0B4J268 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRAV4A0A0B4J268 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRAV4A0A0B4J268 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC19.44■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 10.4 ms