Protein–RNA interactions for Protein: A0A0B4J268

TRAV4, T-cell receptor alpha variable 4 (Fragment), humanhuman

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV4A0A0B4J268 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
TRAV4A0A0B4J268 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC24.04■■□□□ 1.44
TRAV4A0A0B4J268 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC23.63■■□□□ 1.37
TRAV4A0A0B4J268 AL356512.1-201ENST00000607453 1739 ntBASIC23.61■■□□□ 1.37
TRAV4A0A0B4J268 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC23.51■■□□□ 1.35
TRAV4A0A0B4J268 HES6-203ENST00000409160 1600 ntTSL 2 BASIC23.49■■□□□ 1.35
TRAV4A0A0B4J268 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC23.37■■□□□ 1.33
TRAV4A0A0B4J268 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
TRAV4A0A0B4J268 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC23.22■■□□□ 1.31
TRAV4A0A0B4J268 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
TRAV4A0A0B4J268 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC23.03■■□□□ 1.28
TRAV4A0A0B4J268 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC22.95■■□□□ 1.26
TRAV4A0A0B4J268 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC22.79■■□□□ 1.24
TRAV4A0A0B4J268 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC22.69■■□□□ 1.22
TRAV4A0A0B4J268 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
TRAV4A0A0B4J268 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC22.55■■□□□ 1.2
TRAV4A0A0B4J268 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
TRAV4A0A0B4J268 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC22.37■■□□□ 1.17
TRAV4A0A0B4J268 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC22.35■■□□□ 1.17
TRAV4A0A0B4J268 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC22.26■■□□□ 1.15
TRAV4A0A0B4J268 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
TRAV4A0A0B4J268 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC22.23■■□□□ 1.15
TRAV4A0A0B4J268 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC22.2■■□□□ 1.14
TRAV4A0A0B4J268 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC22.18■■□□□ 1.14
TRAV4A0A0B4J268 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC22.14■■□□□ 1.13
TRAV4A0A0B4J268 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC22.06■■□□□ 1.12
TRAV4A0A0B4J268 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC22.03■■□□□ 1.12
TRAV4A0A0B4J268 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC21.96■■□□□ 1.11
TRAV4A0A0B4J268 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
TRAV4A0A0B4J268 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.1
TRAV4A0A0B4J268 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC21.95■■□□□ 1.1
TRAV4A0A0B4J268 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
TRAV4A0A0B4J268 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
TRAV4A0A0B4J268 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
TRAV4A0A0B4J268 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
TRAV4A0A0B4J268 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC21.78■■□□□ 1.08
TRAV4A0A0B4J268 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC21.77■■□□□ 1.08
TRAV4A0A0B4J268 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC21.74■■□□□ 1.07
TRAV4A0A0B4J268 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
TRAV4A0A0B4J268 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
TRAV4A0A0B4J268 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
TRAV4A0A0B4J268 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
TRAV4A0A0B4J268 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC21.49■■□□□ 1.03
TRAV4A0A0B4J268 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC21.43■■□□□ 1.02
TRAV4A0A0B4J268 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
TRAV4A0A0B4J268 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.01
TRAV4A0A0B4J268 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.01
TRAV4A0A0B4J268 ILK-212ENST00000532063 1617 ntTSL 2 BASIC21.35■■□□□ 1.01
TRAV4A0A0B4J268 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
TRAV4A0A0B4J268 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TRAV4A0A0B4J268 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
TRAV4A0A0B4J268 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC21.3■■□□□ 1
TRAV4A0A0B4J268 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC21.29■■□□□ 1
TRAV4A0A0B4J268 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TRAV4A0A0B4J268 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
TRAV4A0A0B4J268 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRAV4A0A0B4J268 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRAV4A0A0B4J268 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
TRAV4A0A0B4J268 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TRAV4A0A0B4J268 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TRAV4A0A0B4J268 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRAV4A0A0B4J268 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC21.14■□□□□ 0.97
TRAV4A0A0B4J268 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TRAV4A0A0B4J268 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC21.11■□□□□ 0.97
TRAV4A0A0B4J268 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRAV4A0A0B4J268 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRAV4A0A0B4J268 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TRAV4A0A0B4J268 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRAV4A0A0B4J268 INO80B-203ENST00000409917 796 ntTSL 2 BASIC21.02■□□□□ 0.96
TRAV4A0A0B4J268 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRAV4A0A0B4J268 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
TRAV4A0A0B4J268 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
TRAV4A0A0B4J268 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
TRAV4A0A0B4J268 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRAV4A0A0B4J268 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRAV4A0A0B4J268 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
TRAV4A0A0B4J268 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
TRAV4A0A0B4J268 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRAV4A0A0B4J268 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TRAV4A0A0B4J268 AC015813.7-201ENST00000623294 581 ntBASIC20.87■□□□□ 0.93
TRAV4A0A0B4J268 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
TRAV4A0A0B4J268 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
TRAV4A0A0B4J268 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
TRAV4A0A0B4J268 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC20.79■□□□□ 0.92
TRAV4A0A0B4J268 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRAV4A0A0B4J268 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
TRAV4A0A0B4J268 AC145285.7-201ENST00000614819 1539 ntBASIC20.76■□□□□ 0.91
TRAV4A0A0B4J268 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRAV4A0A0B4J268 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
TRAV4A0A0B4J268 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC20.71■□□□□ 0.91
TRAV4A0A0B4J268 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC20.68■□□□□ 0.9
TRAV4A0A0B4J268 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
TRAV4A0A0B4J268 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
TRAV4A0A0B4J268 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRAV4A0A0B4J268 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TRAV4A0A0B4J268 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
TRAV4A0A0B4J268 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TRAV4A0A0B4J268 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC20.57■□□□□ 0.88
TRAV4A0A0B4J268 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC20.54■□□□□ 0.88
TRAV4A0A0B4J268 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 11.7 ms