Protein–RNA interactions for Protein: Q96PV0

SYNGAP1, Ras/Rap GTPase-activating protein SynGAP, humanhuman

Predictions only

Length 1,343 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1Q96PV0 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SYNGAP1Q96PV0 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
SYNGAP1Q96PV0 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC15.9■□□□□ 0.14
SYNGAP1Q96PV0 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
SYNGAP1Q96PV0 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
SYNGAP1Q96PV0 PSMC4-202ENST00000455878 1333 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
SYNGAP1Q96PV0 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC15.9■□□□□ 0.14
SYNGAP1Q96PV0 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
SYNGAP1Q96PV0 UBOX5-AS1-201ENST00000446537 1792 ntTSL 2 BASIC15.9■□□□□ 0.14
SYNGAP1Q96PV0 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SYNGAP1Q96PV0 LUC7L2-208ENST00000541170 1525 ntTSL 2 BASIC15.9■□□□□ 0.14
SYNGAP1Q96PV0 DERL3-202ENST00000318109 860 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
SYNGAP1Q96PV0 MT1H-201ENST00000332374 397 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SYNGAP1Q96PV0 BCL2L11-202ENST00000337565 720 ntTSL 5 BASIC15.9■□□□□ 0.14
SYNGAP1Q96PV0 AP000354.1-201ENST00000396982 456 ntBASIC15.9■□□□□ 0.14
SYNGAP1Q96PV0 AP002856.2-201ENST00000416553 584 ntTSL 3 BASIC15.9■□□□□ 0.14
SYNGAP1Q96PV0 OR51A9P-201ENST00000422578 911 ntBASIC15.9■□□□□ 0.14
SYNGAP1Q96PV0 SNX3-204ENST00000426155 1072 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
SYNGAP1Q96PV0 AL158166.1-201ENST00000433110 371 ntTSL 2 BASIC15.9■□□□□ 0.14
SYNGAP1Q96PV0 AL356218.1-201ENST00000450864 353 ntTSL 3 BASIC15.9■□□□□ 0.14
SYNGAP1Q96PV0 STK24P1-201ENST00000455035 1291 ntBASIC15.9■□□□□ 0.14
SYNGAP1Q96PV0 AC244197.1-201ENST00000456494 951 ntBASIC15.9■□□□□ 0.14
SYNGAP1Q96PV0 KRT18P37-201ENST00000520711 1282 ntBASIC15.9■□□□□ 0.14
SYNGAP1Q96PV0 AC026310.2-201ENST00000546353 728 ntTSL 4 BASIC15.9■□□□□ 0.14
SYNGAP1Q96PV0 TUBB3-208ENST00000555576 572 ntTSL 4 BASIC15.9■□□□□ 0.14
SYNGAP1Q96PV0 DLK1-205ENST00000556051 469 ntTSL 2 BASIC15.9■□□□□ 0.14
SYNGAP1Q96PV0 CES1P2-201ENST00000566467 1242 ntBASIC15.9■□□□□ 0.14
SYNGAP1Q96PV0 APOC4-202ENST00000592954 615 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SYNGAP1Q96PV0 HMGB1P24-201ENST00000611897 328 ntBASIC15.9■□□□□ 0.14
SYNGAP1Q96PV0 Metazoa_SRP.144-201ENST00000617007 311 ntBASIC15.9■□□□□ 0.14
SYNGAP1Q96PV0 HTR4-213ENST00000631296 1224 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SYNGAP1Q96PV0 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC15.9■□□□□ 0.14
SYNGAP1Q96PV0 USP39-220ENST00000613444 2161 ntTSL 2 BASIC15.9■□□□□ 0.14
SYNGAP1Q96PV0 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
SYNGAP1Q96PV0 AC020910.6-201ENST00000623084 1459 ntBASIC15.9■□□□□ 0.14
SYNGAP1Q96PV0 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.14
SYNGAP1Q96PV0 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
SYNGAP1Q96PV0 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC15.89■□□□□ 0.13
SYNGAP1Q96PV0 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
SYNGAP1Q96PV0 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
SYNGAP1Q96PV0 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SYNGAP1Q96PV0 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
SYNGAP1Q96PV0 AC005840.4-201ENST00000541242 2494 ntBASIC15.89■□□□□ 0.13
SYNGAP1Q96PV0 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC15.89■□□□□ 0.13
SYNGAP1Q96PV0 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC15.89■□□□□ 0.13
SYNGAP1Q96PV0 AL928921.2-201ENST00000641325 2442 ntBASIC15.89■□□□□ 0.13
SYNGAP1Q96PV0 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC15.89■□□□□ 0.13
SYNGAP1Q96PV0 HERPUD1-203ENST00000379792 1782 ntTSL 5 BASIC15.89■□□□□ 0.13
SYNGAP1Q96PV0 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
SYNGAP1Q96PV0 AL590824.1-201ENST00000403828 1349 ntBASIC15.89■□□□□ 0.13
SYNGAP1Q96PV0 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
SYNGAP1Q96PV0 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC15.89■□□□□ 0.13
SYNGAP1Q96PV0 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SYNGAP1Q96PV0 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SYNGAP1Q96PV0 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SYNGAP1Q96PV0 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
SYNGAP1Q96PV0 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
SYNGAP1Q96PV0 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SYNGAP1Q96PV0 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
SYNGAP1Q96PV0 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
SYNGAP1Q96PV0 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
SYNGAP1Q96PV0 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SYNGAP1Q96PV0 LCE2C-201ENST00000368783 614 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SYNGAP1Q96PV0 EIF4E2-205ENST00000409394 604 ntTSL 3 BASIC15.89■□□□□ 0.13
SYNGAP1Q96PV0 HMGA1P1-201ENST00000415560 1062 ntBASIC15.89■□□□□ 0.13
SYNGAP1Q96PV0 SERBP1P2-201ENST00000436888 1164 ntBASIC15.89■□□□□ 0.13
SYNGAP1Q96PV0 LINC00173-201ENST00000470091 435 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
SYNGAP1Q96PV0 AC026470.1-201ENST00000478038 846 ntBASIC15.89■□□□□ 0.13
SYNGAP1Q96PV0 MUSTN1-202ENST00000486659 622 ntTSL 2 BASIC15.89■□□□□ 0.13
SYNGAP1Q96PV0 ALG1L3P-201ENST00000503331 765 ntBASIC15.89■□□□□ 0.13
SYNGAP1Q96PV0 AC100858.1-201ENST00000514059 1228 ntBASIC15.89■□□□□ 0.13
SYNGAP1Q96PV0 TROAP-213ENST00000550709 778 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
SYNGAP1Q96PV0 PPCDC-206ENST00000564923 757 ntTSL 5 BASIC15.89■□□□□ 0.13
SYNGAP1Q96PV0 SHBG-210ENST00000572262 984 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
SYNGAP1Q96PV0 LINC01543-201ENST00000578367 900 ntTSL 5 BASIC15.89■□□□□ 0.13
SYNGAP1Q96PV0 C19orf70-203ENST00000587589 577 ntTSL 5 BASIC15.89■□□□□ 0.13
SYNGAP1Q96PV0 MIA-206ENST00000597784 455 ntAPPRIS P1 TSL 3 BASIC15.89■□□□□ 0.13
SYNGAP1Q96PV0 COQ4-204ENST00000608951 781 ntTSL 2 BASIC15.89■□□□□ 0.13
SYNGAP1Q96PV0 ANKRD20A21P-201ENST00000611282 517 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
SYNGAP1Q96PV0 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SYNGAP1Q96PV0 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SYNGAP1Q96PV0 CICP4-201ENST00000447359 2812 ntBASIC15.89■□□□□ 0.13
SYNGAP1Q96PV0 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SYNGAP1Q96PV0 WDR46-231ENST00000374617 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SYNGAP1Q96PV0 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC15.89■□□□□ 0.13
SYNGAP1Q96PV0 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
SYNGAP1Q96PV0 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC15.89■□□□□ 0.13
SYNGAP1Q96PV0 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
SYNGAP1Q96PV0 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SYNGAP1Q96PV0 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC15.88■□□□□ 0.13
SYNGAP1Q96PV0 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SYNGAP1Q96PV0 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
SYNGAP1Q96PV0 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SYNGAP1Q96PV0 AL109809.1-201ENST00000418979 1367 ntBASIC15.88■□□□□ 0.13
SYNGAP1Q96PV0 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC15.88■□□□□ 0.13
SYNGAP1Q96PV0 GNAO1-205ENST00000563661 1351 ntTSL 2 BASIC15.88■□□□□ 0.13
SYNGAP1Q96PV0 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SYNGAP1Q96PV0 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
SYNGAP1Q96PV0 CLTCL1-212ENST00000622493 1714 ntTSL 2 BASIC15.88■□□□□ 0.13
SYNGAP1Q96PV0 EFHC1-230ENST00000637263 2089 ntTSL 5 BASIC15.88■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 79.1 ms