RNA–Protein interactions for RNA: ENST00000426155.6

SNX3-204, Transcript of sorting nexin 3, humanhuman

TSL 1 (best) BASIC

Gene SNX3, Length 1,072 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3-204ENST00000426155 NISCHQ9Y2I1 1504 aa33.48■■■□□ 2.95
SNX3-204ENST00000426155 CCDC180Q9P1Z9 1646 aa29.86■■■□□ 2.37
SNX3-204ENST00000426155 AEBP2Q6ZN18 517 aaPredicted RBP29.45■■■□□ 2.31
SNX3-204ENST00000426155 ABCC9O60706 1549 aa29.34■■■□□ 2.29
SNX3-204ENST00000426155 RB1CC1Q8TDY2 1594 aa28.12■■■□□ 2.09
SNX3-204ENST00000426155 NACADO15069 1562 aa28.03■■■□□ 2.08
SNX3-204ENST00000426155 DCAF8L2P0C7V8 631 aa27.97■■■□□ 2.07
SNX3-204ENST00000426155 CHIC1Q5VXU3 224 aa27.95■■■□□ 2.06
SNX3-204ENST00000426155 ZCCHC6Q5VYS8 1495 aaKnown RBP27.89■■■□□ 2.05
SNX3-204ENST00000426155 MYO15BQ96JP2 1530 aa27.77■■■□□ 2.04
SNX3-204ENST00000426155 UNC13AQ9UPW8 1703 aa27.67■■■□□ 2.02
SNX3-204ENST00000426155 DCAF1Q9Y4B6 1507 aa27.64■■■□□ 2.02
SNX3-204ENST00000426155 PABPN1Q86U42 306 aaKnown RBP eCLIP27.35■■□□□ 1.97
SNX3-204ENST00000426155 BICRAQ9NZM4 1560 aa27.35■■□□□ 1.97
SNX3-204ENST00000426155 SCRIBQ14160 1630 aa27.3■■□□□ 1.96
SNX3-204ENST00000426155 DNAJC5BQ9UF47 199 aa26.98■■□□□ 1.91
SNX3-204ENST00000426155 SHROOM4Q9ULL8 1493 aa26.9■■□□□ 1.9
SNX3-204ENST00000426155 EIF4G1Q04637 1599 aaKnown RBP26.61■■□□□ 1.85
SNX3-204ENST00000426155 CC2D2AQ9P2K1 1620 aa26.54■■□□□ 1.84
SNX3-204ENST00000426155 CECR2Q9BXF3 1484 aa26.32■■□□□ 1.8
SNX3-204ENST00000426155 SMARCA4P51532 1647 aa26.06■■□□□ 1.76
SNX3-204ENST00000426155 BAZ1AQ9NRL2 1556 aaPredicted RBP25.95■■□□□ 1.75
SNX3-204ENST00000426155 ATAD2BQ9ULI0 1458 aa25.88■■□□□ 1.73
SNX3-204ENST00000426155 MROH2BQ7Z745 1585 aa25.85■■□□□ 1.73
SNX3-204ENST00000426155 NCAPD3P42695 1498 aa25.83■■□□□ 1.73
SNX3-204ENST00000426155 SMARCA2P51531 1590 aa25.82■■□□□ 1.72
SNX3-204ENST00000426155 HMGXB3Q12766 1538 aa25.76■■□□□ 1.71
SNX3-204ENST00000426155 PEG3Q9GZU2 1588 aa25.75■■□□□ 1.71
SNX3-204ENST00000426155 BAZ1BQ9UIG0 1483 aaKnown RBP25.67■■□□□ 1.7
SNX3-204ENST00000426155 WIZO95785 1651 aa25.62■■□□□ 1.69
SNX3-204ENST00000426155 RSF1Q96T23 1441 aaPredicted RBP25.46■■□□□ 1.67
SNX3-204ENST00000426155 NESP48681 1621 aa25.38■■□□□ 1.65
SNX3-204ENST00000426155 TOP2AP11388 1531 aaKnown RBP25.27■■□□□ 1.64
SNX3-204ENST00000426155 ERCC6Q03468 1493 aa25.24■■□□□ 1.63
SNX3-204ENST00000426155 LAMC3Q9Y6N6 1575 aa25.22■■□□□ 1.63
SNX3-204ENST00000426155 KIF21AQ7Z4S6 1674 aa25.14■■□□□ 1.62
SNX3-204ENST00000426155 CADPSQ9ULU8 1353 aa25.07■■□□□ 1.6
SNX3-204ENST00000426155 THOC2Q8NI27 1593 aaKnown RBP25.04■■□□□ 1.6
SNX3-204ENST00000426155 CUX2O14529 1486 aa24.98■■□□□ 1.59
SNX3-204ENST00000426155 PDS5BQ9NTI5 1447 aa24.98■■□□□ 1.59
SNX3-204ENST00000426155 CCDC88BA6NC98 1476 aa24.95■■□□□ 1.58
SNX3-204ENST00000426155 CFTRP13569 1480 aa24.93■■□□□ 1.58
SNX3-204ENST00000426155 PRDM2Q13029 1718 aa24.89■■□□□ 1.57
SNX3-204ENST00000426155 SENP3Q9H4L4 574 aaPredicted RBP24.87■■□□□ 1.57
SNX3-204ENST00000426155 FANCD2Q9BXW9 1451 aa24.84■■□□□ 1.57
SNX3-204ENST00000426155 CEP164Q9UPV0 1460 aa24.83■■□□□ 1.56
SNX3-204ENST00000426155 MRC2Q9UBG0 1479 aa24.81■■□□□ 1.56
SNX3-204ENST00000426155 WDR62O43379 1518 aa24.76■■□□□ 1.55
SNX3-204ENST00000426155 SUPT5HO00267 1087 aaKnown RBP24.72■■□□□ 1.55
SNX3-204ENST00000426155 PHF23Q9BUL5 403 aaPredicted RBP24.65■■□□□ 1.54
SNX3-204ENST00000426155 URB2Q14146 1524 aaKnown RBP24.65■■□□□ 1.54
SNX3-204ENST00000426155 TOPBP1Q92547 1522 aa24.45■■□□□ 1.51
SNX3-204ENST00000426155 DNMBPQ6XZF7 1577 aa24.42■■□□□ 1.5
SNX3-204ENST00000426155 ABCC8Q09428 1581 aa24.33■■□□□ 1.49
SNX3-204ENST00000426155 DNAJC5Q9H3Z4 198 aa24.3■■□□□ 1.48
SNX3-204ENST00000426155 IFT140Q96RY7 1462 aa24.27■■□□□ 1.48
SNX3-204ENST00000426155 ZNF608Q9ULD9 1512 aaPredicted RBP24.26■■□□□ 1.47
SNX3-204ENST00000426155 CUX1P39880 1505 aa24.25■■□□□ 1.47
SNX3-204ENST00000426155 POLA1P09884 1462 aaPredicted RBP24.24■■□□□ 1.47
SNX3-204ENST00000426155 TARBP1Q13395 1621 aaKnown RBP24.24■■□□□ 1.47
SNX3-204ENST00000426155 EIF4G3O43432 1585 aaKnown RBP24.2■■□□□ 1.47
SNX3-204ENST00000426155 FGD5Q6ZNL6 1462 aa24.18■■□□□ 1.46
SNX3-204ENST00000426155 RAD54L2Q9Y4B4 1467 aa24.15■■□□□ 1.46
SNX3-204ENST00000426155 WDR97A6NE52 1622 aa24.07■■□□□ 1.44
SNX3-204ENST00000426155 SOGA1O94964 1423 aa24.07■■□□□ 1.44
SNX3-204ENST00000426155 AQRO60306 1485 aaKnown RBP eCLIP24.07■■□□□ 1.44
SNX3-204ENST00000426155 SYNJ1O43426 1573 aa24.05■■□□□ 1.44
SNX3-204ENST00000426155 BIVM-ERCC5R4GMW8 1640 aa24.04■■□□□ 1.44
SNX3-204ENST00000426155 TOP2BQ02880 1626 aa24.01■■□□□ 1.43
SNX3-204ENST00000426155 WRNQ14191 1432 aaPredicted RBP eCLIP24■■□□□ 1.43
SNX3-204ENST00000426155 TDRD9Q8NDG6 1382 aaKnown RBP23.99■■□□□ 1.43
SNX3-204ENST00000426155 CHD1O14646 1710 aa23.96■■□□□ 1.43
SNX3-204ENST00000426155 PBRM1Q86U86 1689 aa23.92■■□□□ 1.42
SNX3-204ENST00000426155 ABCA10Q8WWZ4 1543 aa23.89■■□□□ 1.41
SNX3-204ENST00000426155 ABCA5Q8WWZ7 1642 aa23.88■■□□□ 1.41
SNX3-204ENST00000426155 SNAPC4Q5SXM2 1469 aa23.87■■□□□ 1.41
SNX3-204ENST00000426155 OSCARQ8IYS5 282 aa23.86■■□□□ 1.41
SNX3-204ENST00000426155 GRIN2BQ13224 1484 aa23.82■■□□□ 1.4
SNX3-204ENST00000426155 GAPVD1Q14C86 1478 aa23.82■■□□□ 1.4
SNX3-204ENST00000426155 MAGI1Q96QZ7 1491 aaPredicted RBP23.77■■□□□ 1.4
SNX3-204ENST00000426155 FBLN2P98095 1184 aa23.76■■□□□ 1.39
SNX3-204ENST00000426155 SYNJ2O15056 1496 aa23.69■■□□□ 1.38
SNX3-204ENST00000426155 RIMBP3CA6NJZ7 1639 aa23.67■■□□□ 1.38
SNX3-204ENST00000426155 RIMBP3BA6NNM3 1639 aa23.67■■□□□ 1.38
SNX3-204ENST00000426155 RIMBP3Q9UFD9 1639 aa23.67■■□□□ 1.38
SNX3-204ENST00000426155 ADAMTS12P58397 1594 aa23.67■■□□□ 1.38
SNX3-204ENST00000426155 CHMP7Q8WUX9 453 aaPredicted RBP23.63■■□□□ 1.37
SNX3-204ENST00000426155 CLASP1Q7Z460 1538 aa23.62■■□□□ 1.37
SNX3-204ENST00000426155 ARHGEF11O15085 1522 aa23.61■■□□□ 1.37
SNX3-204ENST00000426155 ERICH3Q5RHP9 1530 aa23.6■■□□□ 1.37
SNX3-204ENST00000426155 GRIN2AQ12879 1464 aa23.55■■□□□ 1.36
SNX3-204ENST00000426155 TRIM41Q8WV44 630 aa23.54■■□□□ 1.36
SNX3-204ENST00000426155 FHAD1B1AJZ9 1412 aa23.51■■□□□ 1.35
SNX3-204ENST00000426155 CEP170Q5SW79 1584 aa23.5■■□□□ 1.35
SNX3-204ENST00000426155 KIF27Q86VH2 1401 aa23.46■■□□□ 1.35
SNX3-204ENST00000426155 ARAP1Q96P48 1450 aa23.43■■□□□ 1.34
SNX3-204ENST00000426155 NUP160Q12769 1436 aa23.42■■□□□ 1.34
SNX3-204ENST00000426155 CUL7Q14999 1698 aa23.41■■□□□ 1.34
SNX3-204ENST00000426155 IGF1RP08069 1367 aa23.38■■□□□ 1.33
SNX3-204ENST00000426155 RUSC2Q8N2Y8 1516 aa23.34■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms