RNA–Protein interactions for RNA: ENST00000578367.1

LINC01543-201, Transcript of long intergenic non-protein coding RNA 1543, humanhuman

TSL 5 BASIC

Gene LINC01543, Length 900 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01543-201ENST00000578367 NISCHQ9Y2I1 1504 aa32.89■■■□□ 2.86
LINC01543-201ENST00000578367 CCDC180Q9P1Z9 1646 aa29.03■■■□□ 2.24
LINC01543-201ENST00000578367 ABCC9O60706 1549 aa27.95■■■□□ 2.06
LINC01543-201ENST00000578367 ZCCHC6Q5VYS8 1495 aaKnown RBP27.49■■□□□ 1.99
LINC01543-201ENST00000578367 MYO15BQ96JP2 1530 aa27.35■■□□□ 1.97
LINC01543-201ENST00000578367 DCAF1Q9Y4B6 1507 aa27.34■■□□□ 1.97
LINC01543-201ENST00000578367 NACADO15069 1562 aa27.27■■□□□ 1.96
LINC01543-201ENST00000578367 DCAF8L2P0C7V8 631 aa27.22■■□□□ 1.95
LINC01543-201ENST00000578367 RB1CC1Q8TDY2 1594 aa27.16■■□□□ 1.94
LINC01543-201ENST00000578367 SCRIBQ14160 1630 aa26.4■■□□□ 1.82
LINC01543-201ENST00000578367 UNC13AQ9UPW8 1703 aa26.31■■□□□ 1.8
LINC01543-201ENST00000578367 BICRAQ9NZM4 1560 aa26.24■■□□□ 1.79
LINC01543-201ENST00000578367 SHROOM4Q9ULL8 1493 aa26.24■■□□□ 1.79
LINC01543-201ENST00000578367 PABPN1Q86U42 306 aaKnown RBP eCLIP26.2■■□□□ 1.78
LINC01543-201ENST00000578367 EIF4G1Q04637 1599 aaKnown RBP25.55■■□□□ 1.68
LINC01543-201ENST00000578367 CECR2Q9BXF3 1484 aa25.49■■□□□ 1.67
LINC01543-201ENST00000578367 BAZ1AQ9NRL2 1556 aaPredicted RBP25.48■■□□□ 1.67
LINC01543-201ENST00000578367 SMARCA4P51532 1647 aa25.37■■□□□ 1.65
LINC01543-201ENST00000578367 CC2D2AQ9P2K1 1620 aa25.3■■□□□ 1.64
LINC01543-201ENST00000578367 DNAJC5BQ9UF47 199 aa25.29■■□□□ 1.64
LINC01543-201ENST00000578367 MROH2BQ7Z745 1585 aa25.28■■□□□ 1.64
LINC01543-201ENST00000578367 SMARCA2P51531 1590 aa25.22■■□□□ 1.63
LINC01543-201ENST00000578367 PEG3Q9GZU2 1588 aa25.22■■□□□ 1.63
LINC01543-201ENST00000578367 RSF1Q96T23 1441 aaPredicted RBP25.21■■□□□ 1.63
LINC01543-201ENST00000578367 ATAD2BQ9ULI0 1458 aa25.21■■□□□ 1.63
LINC01543-201ENST00000578367 NCAPD3P42695 1498 aa25.2■■□□□ 1.62
LINC01543-201ENST00000578367 HMGXB3Q12766 1538 aa25.07■■□□□ 1.6
LINC01543-201ENST00000578367 BAZ1BQ9UIG0 1483 aaKnown RBP25■■□□□ 1.59
LINC01543-201ENST00000578367 WIZO95785 1651 aa24.94■■□□□ 1.58
LINC01543-201ENST00000578367 TOP2AP11388 1531 aaKnown RBP24.84■■□□□ 1.57
LINC01543-201ENST00000578367 SUPT5HO00267 1087 aaKnown RBP24.78■■□□□ 1.56
LINC01543-201ENST00000578367 CCDC88BA6NC98 1476 aa24.53■■□□□ 1.52
LINC01543-201ENST00000578367 CADPSQ9ULU8 1353 aa24.47■■□□□ 1.51
LINC01543-201ENST00000578367 LAMC3Q9Y6N6 1575 aa24.4■■□□□ 1.5
LINC01543-201ENST00000578367 CFTRP13569 1480 aa24.39■■□□□ 1.5
LINC01543-201ENST00000578367 PDS5BQ9NTI5 1447 aa24.29■■□□□ 1.48
LINC01543-201ENST00000578367 NESP48681 1621 aa24.28■■□□□ 1.48
LINC01543-201ENST00000578367 ERCC6Q03468 1493 aa24.13■■□□□ 1.45
LINC01543-201ENST00000578367 FANCD2Q9BXW9 1451 aa24.13■■□□□ 1.45
LINC01543-201ENST00000578367 CEP164Q9UPV0 1460 aa24.07■■□□□ 1.44
LINC01543-201ENST00000578367 PRDM2Q13029 1718 aa24.05■■□□□ 1.44
LINC01543-201ENST00000578367 MRC2Q9UBG0 1479 aa23.95■■□□□ 1.42
LINC01543-201ENST00000578367 KIF21AQ7Z4S6 1674 aa23.93■■□□□ 1.42
LINC01543-201ENST00000578367 ABCC8Q09428 1581 aa23.92■■□□□ 1.42
LINC01543-201ENST00000578367 THOC2Q8NI27 1593 aaKnown RBP23.85■■□□□ 1.41
LINC01543-201ENST00000578367 WDR62O43379 1518 aa23.84■■□□□ 1.41
LINC01543-201ENST00000578367 CUX2O14529 1486 aa23.81■■□□□ 1.4
LINC01543-201ENST00000578367 URB2Q14146 1524 aaKnown RBP23.81■■□□□ 1.4
LINC01543-201ENST00000578367 DNMBPQ6XZF7 1577 aa23.78■■□□□ 1.4
LINC01543-201ENST00000578367 WRNQ14191 1432 aaPredicted RBP eCLIP23.77■■□□□ 1.4
LINC01543-201ENST00000578367 TOPBP1Q92547 1522 aa23.76■■□□□ 1.39
LINC01543-201ENST00000578367 CUX1P39880 1505 aa23.69■■□□□ 1.38
LINC01543-201ENST00000578367 TOP2BQ02880 1626 aa23.63■■□□□ 1.37
LINC01543-201ENST00000578367 POLA1P09884 1462 aaPredicted RBP23.6■■□□□ 1.37
LINC01543-201ENST00000578367 BIVM-ERCC5R4GMW8 1640 aa23.59■■□□□ 1.37
LINC01543-201ENST00000578367 IFT140Q96RY7 1462 aa23.59■■□□□ 1.37
LINC01543-201ENST00000578367 FGD5Q6ZNL6 1462 aa23.57■■□□□ 1.36
LINC01543-201ENST00000578367 SYNJ1O43426 1573 aa23.57■■□□□ 1.36
LINC01543-201ENST00000578367 SOGA1O94964 1423 aa23.54■■□□□ 1.36
LINC01543-201ENST00000578367 TRIM41Q8WV44 630 aa23.48■■□□□ 1.35
LINC01543-201ENST00000578367 CHIC1Q5VXU3 224 aa23.44■■□□□ 1.34
LINC01543-201ENST00000578367 TARBP1Q13395 1621 aaKnown RBP23.44■■□□□ 1.34
LINC01543-201ENST00000578367 ABCA10Q8WWZ4 1543 aa23.43■■□□□ 1.34
LINC01543-201ENST00000578367 RAD54L2Q9Y4B4 1467 aa23.43■■□□□ 1.34
LINC01543-201ENST00000578367 WDR97A6NE52 1622 aa23.42■■□□□ 1.34
LINC01543-201ENST00000578367 ZNF608Q9ULD9 1512 aaPredicted RBP23.32■■□□□ 1.32
LINC01543-201ENST00000578367 TDRD9Q8NDG6 1382 aaKnown RBP23.3■■□□□ 1.32
LINC01543-201ENST00000578367 KIF27Q86VH2 1401 aa23.28■■□□□ 1.32
LINC01543-201ENST00000578367 AQRO60306 1485 aaKnown RBP eCLIP23.27■■□□□ 1.32
LINC01543-201ENST00000578367 GAPVD1Q14C86 1478 aa23.26■■□□□ 1.31
LINC01543-201ENST00000578367 GRIN2BQ13224 1484 aa23.24■■□□□ 1.31
LINC01543-201ENST00000578367 EIF4G3O43432 1585 aaKnown RBP23.23■■□□□ 1.31
LINC01543-201ENST00000578367 ABCA5Q8WWZ7 1642 aa23.22■■□□□ 1.31
LINC01543-201ENST00000578367 EEA1Q15075 1411 aa23.17■■□□□ 1.3
LINC01543-201ENST00000578367 ERICH3Q5RHP9 1530 aa23.17■■□□□ 1.3
LINC01543-201ENST00000578367 MAGI1Q96QZ7 1491 aaPredicted RBP23.14■■□□□ 1.29
LINC01543-201ENST00000578367 IGF1RP08069 1367 aa23.13■■□□□ 1.29
LINC01543-201ENST00000578367 SNAPC4Q5SXM2 1469 aa23.07■■□□□ 1.28
LINC01543-201ENST00000578367 FHAD1B1AJZ9 1412 aa23.06■■□□□ 1.28
LINC01543-201ENST00000578367 PBRM1Q86U86 1689 aa23.03■■□□□ 1.28
LINC01543-201ENST00000578367 SYNJ2O15056 1496 aa23.03■■□□□ 1.28
LINC01543-201ENST00000578367 RUSC2Q8N2Y8 1516 aa23.02■■□□□ 1.28
LINC01543-201ENST00000578367 CSRNP3Q8WYN3 585 aa23.01■■□□□ 1.27
LINC01543-201ENST00000578367 CARMIL1Q5VZK9 1371 aa23■■□□□ 1.27
LINC01543-201ENST00000578367 CHMP7Q8WUX9 453 aaPredicted RBP22.99■■□□□ 1.27
LINC01543-201ENST00000578367 CUL7Q14999 1698 aa22.98■■□□□ 1.27
LINC01543-201ENST00000578367 ADAMTS12P58397 1594 aa22.97■■□□□ 1.27
LINC01543-201ENST00000578367 PRXQ9BXM0 1461 aa22.92■■□□□ 1.26
LINC01543-201ENST00000578367 FBLN2P98095 1184 aa22.91■■□□□ 1.26
LINC01543-201ENST00000578367 OSCARQ8IYS5 282 aa22.9■■□□□ 1.26
LINC01543-201ENST00000578367 GRIN2AQ12879 1464 aa22.9■■□□□ 1.26
LINC01543-201ENST00000578367 RAPGEF2Q9Y4G8 1499 aa22.9■■□□□ 1.26
LINC01543-201ENST00000578367 FAM9AQ8IZU1 332 aaPredicted RBP22.84■■□□□ 1.25
LINC01543-201ENST00000578367 NUP160Q12769 1436 aa22.82■■□□□ 1.24
LINC01543-201ENST00000578367 CHD1O14646 1710 aa22.77■■□□□ 1.24
LINC01543-201ENST00000578367 KIF21BO75037 1637 aa22.75■■□□□ 1.23
LINC01543-201ENST00000578367 KIAA0586Q9BVV6 1533 aa22.72■■□□□ 1.23
LINC01543-201ENST00000578367 CEP170Q5SW79 1584 aa22.69■■□□□ 1.22
LINC01543-201ENST00000578367 GOLGA3Q08378 1498 aa22.69■■□□□ 1.22
LINC01543-201ENST00000578367 CLASP1Q7Z460 1538 aa22.68■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms