RNA–Protein interactions for RNA: ENST00000397066.8

CCNF-202, Transcript of cyclin F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCNF, Length 4,283 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCNF-202ENST00000397066 NISCHQ9Y2I1 1504 aa28.57■■■□□ 2.16
CCNF-202ENST00000397066 SHROOM4Q9ULL8 1493 aa25.36■■□□□ 1.65
CCNF-202ENST00000397066 SUPT5HO00267 1087 aaKnown RBP25.18■■□□□ 1.62
CCNF-202ENST00000397066 DCAF8L2P0C7V8 631 aa24.62■■□□□ 1.53
CCNF-202ENST00000397066 HRCP23327 699 aa24.3■■□□□ 1.48
CCNF-202ENST00000397066 CHIC1Q5VXU3 224 aa24.29■■□□□ 1.48
CCNF-202ENST00000397066 PCGF6Q9BYE7 350 aa24.29■■□□□ 1.48
CCNF-202ENST00000397066 ZCCHC6Q5VYS8 1495 aaKnown RBP24.15■■□□□ 1.46
CCNF-202ENST00000397066 MYO15BQ96JP2 1530 aa24.07■■□□□ 1.44
CCNF-202ENST00000397066 PPARGC1BQ86YN6 1023 aaKnown RBP23.9■■□□□ 1.42
CCNF-202ENST00000397066 LOC105371045A0A1W2PR82 267 aa23.8■■□□□ 1.4
CCNF-202ENST00000397066 CCDC180Q9P1Z9 1646 aa23.8■■□□□ 1.4
CCNF-202ENST00000397066 TRIM26Q12899 539 aaPredicted RBP23.53■■□□□ 1.36
CCNF-202ENST00000397066 DCAF1Q9Y4B6 1507 aa23.49■■□□□ 1.35
CCNF-202ENST00000397066 EHMT2Q96KQ7 1210 aa23.36■■□□□ 1.33
CCNF-202ENST00000397066 FAM9AQ8IZU1 332 aaPredicted RBP23.36■■□□□ 1.33
CCNF-202ENST00000397066 TRIM41Q8WV44 630 aa23.31■■□□□ 1.32
CCNF-202ENST00000397066 ZEB1P37275 1124 aaPredicted RBP23.25■■□□□ 1.31
CCNF-202ENST00000397066 RSF1Q96T23 1441 aaPredicted RBP22.89■■□□□ 1.25
CCNF-202ENST00000397066 SCRIBQ14160 1630 aa22.84■■□□□ 1.25
CCNF-202ENST00000397066 ABCC9O60706 1549 aa22.84■■□□□ 1.25
CCNF-202ENST00000397066 PELP1Q8IZL8 1130 aaKnown RBP22.82■■□□□ 1.24
CCNF-202ENST00000397066 CCER1Q8TC90 406 aaPredicted RBP22.75■■□□□ 1.23
CCNF-202ENST00000397066 TTBK1Q5TCY1 1321 aaPredicted RBP22.69■■□□□ 1.22
CCNF-202ENST00000397066 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.68■■□□□ 1.22
CCNF-202ENST00000397066 SCAF1Q9H7N4 1312 aaKnown RBP22.67■■□□□ 1.22
CCNF-202ENST00000397066 RB1CC1Q8TDY2 1594 aa22.64■■□□□ 1.22
CCNF-202ENST00000397066 CENPBP07199 599 aaPredicted RBP22.43■■□□□ 1.18
CCNF-202ENST00000397066 CECR2Q9BXF3 1484 aa22.41■■□□□ 1.18
CCNF-202ENST00000397066 DIEXFQ68CQ4 756 aaKnown RBP22.4■■□□□ 1.18
CCNF-202ENST00000397066 ACIN1Q9UKV3 1341 aaKnown RBP22.38■■□□□ 1.17
CCNF-202ENST00000397066 NEUROD1Q13562 356 aa22.32■■□□□ 1.16
CCNF-202ENST00000397066 MROH2BQ7Z745 1585 aa22.3■■□□□ 1.16
CCNF-202ENST00000397066 UBTFP17480 764 aaKnown RBP22.28■■□□□ 1.16
CCNF-202ENST00000397066 GTF3C3Q9Y5Q9 886 aa22.27■■□□□ 1.16
CCNF-202ENST00000397066 YTHDC1Q96MU7 727 aaKnown RBP22.18■■□□□ 1.14
CCNF-202ENST00000397066 WIZO95785 1651 aa22.17■■□□□ 1.14
CCNF-202ENST00000397066 NACADO15069 1562 aa22.13■■□□□ 1.13
CCNF-202ENST00000397066 CEP162Q5TB80 1403 aa22.04■■□□□ 1.12
CCNF-202ENST00000397066 ZNF316A6NFI3 1004 aaPredicted RBP22.04■■□□□ 1.12
CCNF-202ENST00000397066 HNRNPUL2Q1KMD3 747 aaKnown RBP22.03■■□□□ 1.12
CCNF-202ENST00000397066 CSRNP3Q8WYN3 585 aa22.02■■□□□ 1.12
CCNF-202ENST00000397066 APLP2Q06481 763 aa21.99■■□□□ 1.11
CCNF-202ENST00000397066 RANGAP1P46060 587 aaPredicted RBP21.98■■□□□ 1.11
CCNF-202ENST00000397066 ABCC8Q09428 1581 aa21.98■■□□□ 1.11
CCNF-202ENST00000397066 CCDC88BA6NC98 1476 aa21.97■■□□□ 1.11
CCNF-202ENST00000397066 BAZ1AQ9NRL2 1556 aaPredicted RBP21.94■■□□□ 1.1
CCNF-202ENST00000397066 SOGA1O94964 1423 aa21.93■■□□□ 1.1
CCNF-202ENST00000397066 TNIKQ9UKE5 1360 aa21.91■■□□□ 1.1
CCNF-202ENST00000397066 WRNQ14191 1432 aaPredicted RBP eCLIP21.88■■□□□ 1.09
CCNF-202ENST00000397066 MYT1Q01538 1121 aa21.81■■□□□ 1.08
CCNF-202ENST00000397066 MIER1Q8N108 512 aa21.79■■□□□ 1.08
CCNF-202ENST00000397066 TOP2AP11388 1531 aaKnown RBP21.77■■□□□ 1.07
CCNF-202ENST00000397066 EEA1Q15075 1411 aa21.76■■□□□ 1.07
CCNF-202ENST00000397066 RUSC2Q8N2Y8 1516 aa21.73■■□□□ 1.07
CCNF-202ENST00000397066 GOLGA3Q08378 1498 aa21.73■■□□□ 1.07
CCNF-202ENST00000397066 PABPN1Q86U42 306 aaKnown RBP eCLIP21.72■■□□□ 1.07
CCNF-202ENST00000397066 EIF4G1Q04637 1599 aaKnown RBP21.68■■□□□ 1.06
CCNF-202ENST00000397066 SMARCA2P51531 1590 aa21.64■■□□□ 1.06
CCNF-202ENST00000397066 SMARCA4P51532 1647 aa21.62■■□□□ 1.05
CCNF-202ENST00000397066 CLIP1P30622 1438 aa21.62■■□□□ 1.05
CCNF-202ENST00000397066 CEP164Q9UPV0 1460 aa21.54■■□□□ 1.04
CCNF-202ENST00000397066 VPS8Q8N3P4 1428 aa21.44■■□□□ 1.02
CCNF-202ENST00000397066 ITGAEP38570 1179 aa21.43■■□□□ 1.02
CCNF-202ENST00000397066 RAPGEF2Q9Y4G8 1499 aa21.33■■□□□ 1
CCNF-202ENST00000397066 SYNJ1O43426 1573 aa21.27■■□□□ 1
CCNF-202ENST00000397066 KIF21BO75037 1637 aa21.25■□□□□ 0.99
CCNF-202ENST00000397066 CLSPNQ9HAW4 1339 aa21.23■□□□□ 0.99
CCNF-202ENST00000397066 BAZ1BQ9UIG0 1483 aaKnown RBP21.22■□□□□ 0.99
CCNF-202ENST00000397066 KANK4Q5T7N3 995 aaPredicted RBP21.22■□□□□ 0.99
CCNF-202ENST00000397066 SUPT16HQ9Y5B9 1047 aaKnown RBP21.21■□□□□ 0.99
CCNF-202ENST00000397066 DHX57Q6P158 1386 aaKnown RBP21.2■□□□□ 0.98
CCNF-202ENST00000397066 ATP1B4Q9UN42 357 aaPredicted RBP21.13■□□□□ 0.97
CCNF-202ENST00000397066 BCANQ96GW7 911 aa21.13■□□□□ 0.97
CCNF-202ENST00000397066 UNC13AQ9UPW8 1703 aa21.12■□□□□ 0.97
CCNF-202ENST00000397066 ATAD2BQ9ULI0 1458 aa21.1■□□□□ 0.97
CCNF-202ENST00000397066 FAM50AQ14320 339 aaKnown RBP21.04■□□□□ 0.96
CCNF-202ENST00000397066 CCNB3Q8WWL7 1395 aa21.02■□□□□ 0.96
CCNF-202ENST00000397066 NEFLP07196 543 aa21.02■□□□□ 0.96
CCNF-202ENST00000397066 DDX10Q13206 875 aaKnown RBP21.01■□□□□ 0.95
CCNF-202ENST00000397066 KCNH8Q96L42 1107 aa20.98■□□□□ 0.95
CCNF-202ENST00000397066 BICRAQ9NZM4 1560 aa20.97■□□□□ 0.95
CCNF-202ENST00000397066 KIF27Q86VH2 1401 aa20.96■□□□□ 0.95
CCNF-202ENST00000397066 FKBP8Q14318 412 aa20.96■□□□□ 0.95
CCNF-202ENST00000397066 ARAP1Q96P48 1450 aa20.96■□□□□ 0.95
CCNF-202ENST00000397066 PEG3Q9GZU2 1588 aa20.95■□□□□ 0.94
CCNF-202ENST00000397066 TSHZ2Q9NRE2 1034 aa20.94■□□□□ 0.94
CCNF-202ENST00000397066 TOP2BQ02880 1626 aa20.9■□□□□ 0.94
CCNF-202ENST00000397066 P3H3Q8IVL6 736 aa20.9■□□□□ 0.94
CCNF-202ENST00000397066 RAB3GAP2Q9H2M9 1393 aa20.9■□□□□ 0.94
CCNF-202ENST00000397066 PRXQ9BXM0 1461 aa20.89■□□□□ 0.94
CCNF-202ENST00000397066 SIN3AQ96ST3 1273 aa20.89■□□□□ 0.94
CCNF-202ENST00000397066 HIRIP3Q9BW71 556 aaPredicted RBP20.89■□□□□ 0.94
CCNF-202ENST00000397066 RRBP1Q9P2E9 1410 aaKnown RBP20.88■□□□□ 0.93
CCNF-202ENST00000397066 ERICH3Q5RHP9 1530 aa20.87■□□□□ 0.93
CCNF-202ENST00000397066 ANP32CO43423 234 aa20.84■□□□□ 0.93
CCNF-202ENST00000397066 TRIM52Q96A61 297 aa20.83■□□□□ 0.93
CCNF-202ENST00000397066 ANP32EQ9BTT0 268 aa20.82■□□□□ 0.92
CCNF-202ENST00000397066 SETD5Q9C0A6 1442 aa20.78■□□□□ 0.92
CCNF-202ENST00000397066 ARHGAP35Q9NRY4 1499 aa20.76■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms