Protein–RNA interactions for Protein: Q5XG99

LYSMD4, LysM and putative peptidoglycan-binding domain-containing protein 4, humanhuman

Predictions only

Length 296 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD4Q5XG99 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
LYSMD4Q5XG99 USP35-204ENST00000530267 2419 ntTSL 2 BASIC13.77□□□□□ -0.21
LYSMD4Q5XG99 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC13.77□□□□□ -0.21
LYSMD4Q5XG99 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
LYSMD4Q5XG99 RPL18-205ENST00000549273 1036 ntTSL 2 BASIC13.77□□□□□ -0.21
LYSMD4Q5XG99 AC004801.1-201ENST00000549557 360 ntBASIC13.77□□□□□ -0.21
LYSMD4Q5XG99 EMC4-208ENST00000559078 599 ntTSL 3 BASIC13.77□□□□□ -0.21
LYSMD4Q5XG99 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
LYSMD4Q5XG99 RN7SL605P-201ENST00000577229 281 ntBASIC13.77□□□□□ -0.21
LYSMD4Q5XG99 AC090004.1-201ENST00000608606 653 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
LYSMD4Q5XG99 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
LYSMD4Q5XG99 MIR6816-201ENST00000620368 66 ntBASIC13.77□□□□□ -0.21
LYSMD4Q5XG99 AC132872.4-202ENST00000622924 2756 ntBASIC13.77□□□□□ -0.21
LYSMD4Q5XG99 AC129778.1-201ENST00000623957 920 ntTSL 5 BASIC13.77□□□□□ -0.21
LYSMD4Q5XG99 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC13.77□□□□□ -0.21
LYSMD4Q5XG99 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
LYSMD4Q5XG99 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
LYSMD4Q5XG99 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC13.77□□□□□ -0.21
LYSMD4Q5XG99 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
LYSMD4Q5XG99 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
LYSMD4Q5XG99 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
LYSMD4Q5XG99 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC13.77□□□□□ -0.21
LYSMD4Q5XG99 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 MTHFR-210ENST00000641407 2387 ntBASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 DNAJB13-201ENST00000339764 1875 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 LRRFIP1-202ENST00000289175 3709 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 RN7SL832P-201ENST00000607781 1756 ntBASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 CHRNA2-201ENST00000240132 1735 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 SRP9-201ENST00000304786 1480 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 AC092115.1-201ENST00000566277 1402 ntBASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 SFXN4-201ENST00000355697 1363 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 CRYBG2-201ENST00000308182 5245 ntAPPRIS P5 TSL 5 BASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 AC046158.3-201ENST00000624947 2558 ntBASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 FLAD1-202ENST00000295530 1211 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 CAMP-201ENST00000296435 745 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 CYB5R2-201ENST00000299498 1254 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 FCN2-202ENST00000350339 943 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 SKOR2-201ENST00000400404 891 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 PGAM1P11-201ENST00000416729 680 ntBASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 LINC01278-201ENST00000433061 529 ntTSL 3 BASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 SLC5A4-AS1-201ENST00000434942 876 ntTSL 3 BASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 ALKBH2-203ENST00000440112 574 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 KLF3-AS1-203ENST00000504219 627 ntTSL 3 BASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 AC122719.1-201ENST00000507989 559 ntTSL 4 BASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 AC078852.1-201ENST00000515842 441 ntTSL 3 BASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 AL359219.1-201ENST00000556311 934 ntBASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 ZFP36-201ENST00000594045 690 ntTSL 3 BASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 LINC01278-206ENST00000610088 554 ntTSL 4 BASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 AC105917.1-201ENST00000506637 2539 ntBASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 AC023157.3-201ENST00000619086 2088 ntBASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 AL022313.4-201ENST00000562756 2046 ntBASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 TPPP3-205ENST00000564104 1736 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
LYSMD4Q5XG99 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
LYSMD4Q5XG99 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LYSMD4Q5XG99 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LYSMD4Q5XG99 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LYSMD4Q5XG99 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
LYSMD4Q5XG99 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
LYSMD4Q5XG99 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LYSMD4Q5XG99 CFAP36-204ENST00000406691 1575 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
LYSMD4Q5XG99 LGALS4-201ENST00000307751 1535 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LYSMD4Q5XG99 AC015909.5-201ENST00000624336 2266 ntBASIC13.75□□□□□ -0.21
LYSMD4Q5XG99 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LYSMD4Q5XG99 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC13.75□□□□□ -0.21
LYSMD4Q5XG99 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LYSMD4Q5XG99 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC13.75□□□□□ -0.21
LYSMD4Q5XG99 USP39-220ENST00000613444 2161 ntTSL 2 BASIC13.75□□□□□ -0.21
LYSMD4Q5XG99 PHKG1-201ENST00000297373 1431 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
LYSMD4Q5XG99 CD74-202ENST00000353334 1449 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
LYSMD4Q5XG99 TMEM9B-202ENST00000525069 1433 ntTSL 2 BASIC13.75□□□□□ -0.21
LYSMD4Q5XG99 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms