RNA–Protein interactions for RNA: ENST00000239367.6

LRP11-201, Transcript of LDL receptor related protein 11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LRP11, Length 3,260 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRP11-201ENST00000239367 NISCHQ9Y2I1 1504 aa32.68■■■□□ 2.82
LRP11-201ENST00000239367 SHROOM4Q9ULL8 1493 aa27.9■■■□□ 2.06
LRP11-201ENST00000239367 SUPT5HO00267 1087 aaKnown RBP27.75■■■□□ 2.03
LRP11-201ENST00000239367 ZCCHC6Q5VYS8 1495 aaKnown RBP27.73■■■□□ 2.03
LRP11-201ENST00000239367 CCDC180Q9P1Z9 1646 aa27.69■■■□□ 2.02
LRP11-201ENST00000239367 PCGF6Q9BYE7 350 aa27.4■■□□□ 1.98
LRP11-201ENST00000239367 PPARGC1BQ86YN6 1023 aaKnown RBP27.39■■□□□ 1.97
LRP11-201ENST00000239367 HRCP23327 699 aa27.38■■□□□ 1.97
LRP11-201ENST00000239367 CHIC1Q5VXU3 224 aa27.06■■□□□ 1.92
LRP11-201ENST00000239367 MYO15BQ96JP2 1530 aa26.99■■□□□ 1.91
LRP11-201ENST00000239367 DCAF1Q9Y4B6 1507 aa26.92■■□□□ 1.9
LRP11-201ENST00000239367 DCAF8L2P0C7V8 631 aa26.79■■□□□ 1.88
LRP11-201ENST00000239367 LOC105371045A0A1W2PR82 267 aa26.52■■□□□ 1.84
LRP11-201ENST00000239367 PELP1Q8IZL8 1130 aaKnown RBP26.31■■□□□ 1.8
LRP11-201ENST00000239367 EHMT2Q96KQ7 1210 aa26.22■■□□□ 1.79
LRP11-201ENST00000239367 ABCC9O60706 1549 aa26.22■■□□□ 1.79
LRP11-201ENST00000239367 SCAF1Q9H7N4 1312 aaKnown RBP26.05■■□□□ 1.76
LRP11-201ENST00000239367 TRIM26Q12899 539 aaPredicted RBP26.05■■□□□ 1.76
LRP11-201ENST00000239367 RSF1Q96T23 1441 aaPredicted RBP25.97■■□□□ 1.75
LRP11-201ENST00000239367 FAM9AQ8IZU1 332 aaPredicted RBP25.88■■□□□ 1.73
LRP11-201ENST00000239367 SCRIBQ14160 1630 aa25.86■■□□□ 1.73
LRP11-201ENST00000239367 RB1CC1Q8TDY2 1594 aa25.79■■□□□ 1.72
LRP11-201ENST00000239367 TRIM41Q8WV44 630 aa25.73■■□□□ 1.71
LRP11-201ENST00000239367 ZEB1P37275 1124 aaPredicted RBP25.71■■□□□ 1.71
LRP11-201ENST00000239367 NACADO15069 1562 aa25.52■■□□□ 1.68
LRP11-201ENST00000239367 TTBK1Q5TCY1 1321 aaPredicted RBP25.48■■□□□ 1.67
LRP11-201ENST00000239367 NEUROD1Q13562 356 aa25.47■■□□□ 1.67
LRP11-201ENST00000239367 GTF3C3Q9Y5Q9 886 aa25.43■■□□□ 1.66
LRP11-201ENST00000239367 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.41■■□□□ 1.66
LRP11-201ENST00000239367 CECR2Q9BXF3 1484 aa25.38■■□□□ 1.65
LRP11-201ENST00000239367 MYT1Q01538 1121 aa25.37■■□□□ 1.65
LRP11-201ENST00000239367 MROH2BQ7Z745 1585 aa25.37■■□□□ 1.65
LRP11-201ENST00000239367 ACIN1Q9UKV3 1341 aaKnown RBP25.36■■□□□ 1.65
LRP11-201ENST00000239367 CCER1Q8TC90 406 aaPredicted RBP25.34■■□□□ 1.65
LRP11-201ENST00000239367 YTHDC1Q96MU7 727 aaKnown RBP25.29■■□□□ 1.64
LRP11-201ENST00000239367 WIZO95785 1651 aa25.24■■□□□ 1.63
LRP11-201ENST00000239367 BAZ1AQ9NRL2 1556 aaPredicted RBP25.19■■□□□ 1.62
LRP11-201ENST00000239367 CENPBP07199 599 aaPredicted RBP25.18■■□□□ 1.62
LRP11-201ENST00000239367 DIEXFQ68CQ4 756 aaKnown RBP25.13■■□□□ 1.61
LRP11-201ENST00000239367 EIF4G1Q04637 1599 aaKnown RBP25.12■■□□□ 1.61
LRP11-201ENST00000239367 TOP2AP11388 1531 aaKnown RBP24.93■■□□□ 1.58
LRP11-201ENST00000239367 WRNQ14191 1432 aaPredicted RBP eCLIP24.88■■□□□ 1.57
LRP11-201ENST00000239367 SMARCA4P51532 1647 aa24.81■■□□□ 1.56
LRP11-201ENST00000239367 CCDC88BA6NC98 1476 aa24.79■■□□□ 1.56
LRP11-201ENST00000239367 SMARCA2P51531 1590 aa24.77■■□□□ 1.56
LRP11-201ENST00000239367 ABCC8Q09428 1581 aa24.76■■□□□ 1.55
LRP11-201ENST00000239367 EEA1Q15075 1411 aa24.72■■□□□ 1.55
LRP11-201ENST00000239367 CEP162Q5TB80 1403 aa24.71■■□□□ 1.55
LRP11-201ENST00000239367 TNIKQ9UKE5 1360 aa24.71■■□□□ 1.55
LRP11-201ENST00000239367 SOGA1O94964 1423 aa24.62■■□□□ 1.53
LRP11-201ENST00000239367 CSRNP3Q8WYN3 585 aa24.57■■□□□ 1.52
LRP11-201ENST00000239367 UNC13AQ9UPW8 1703 aa24.56■■□□□ 1.52
LRP11-201ENST00000239367 MIER1Q8N108 512 aa24.52■■□□□ 1.52
LRP11-201ENST00000239367 ZNF316A6NFI3 1004 aaPredicted RBP24.5■■□□□ 1.51
LRP11-201ENST00000239367 GOLGA3Q08378 1498 aa24.49■■□□□ 1.51
LRP11-201ENST00000239367 RUSC2Q8N2Y8 1516 aa24.45■■□□□ 1.5
LRP11-201ENST00000239367 UBTFP17480 764 aaKnown RBP24.44■■□□□ 1.5
LRP11-201ENST00000239367 HNRNPUL2Q1KMD3 747 aaKnown RBP24.44■■□□□ 1.5
LRP11-201ENST00000239367 PEG3Q9GZU2 1588 aa24.39■■□□□ 1.5
LRP11-201ENST00000239367 CEP164Q9UPV0 1460 aa24.33■■□□□ 1.49
LRP11-201ENST00000239367 KIF21BO75037 1637 aa24.32■■□□□ 1.48
LRP11-201ENST00000239367 RANGAP1P46060 587 aaPredicted RBP24.3■■□□□ 1.48
LRP11-201ENST00000239367 BICRAQ9NZM4 1560 aa24.26■■□□□ 1.47
LRP11-201ENST00000239367 SYNJ1O43426 1573 aa24.22■■□□□ 1.47
LRP11-201ENST00000239367 BAZ1BQ9UIG0 1483 aaKnown RBP24.2■■□□□ 1.46
LRP11-201ENST00000239367 CLIP1P30622 1438 aa24.19■■□□□ 1.46
LRP11-201ENST00000239367 VPS8Q8N3P4 1428 aa24.16■■□□□ 1.46
LRP11-201ENST00000239367 BCANQ96GW7 911 aa24.14■■□□□ 1.45
LRP11-201ENST00000239367 PABPN1Q86U42 306 aaKnown RBP eCLIP24.11■■□□□ 1.45
LRP11-201ENST00000239367 ATAD2BQ9ULI0 1458 aa24.09■■□□□ 1.45
LRP11-201ENST00000239367 APLP2Q06481 763 aa24.03■■□□□ 1.44
LRP11-201ENST00000239367 RAPGEF2Q9Y4G8 1499 aa24.02■■□□□ 1.44
LRP11-201ENST00000239367 SUPT16HQ9Y5B9 1047 aaKnown RBP23.97■■□□□ 1.43
LRP11-201ENST00000239367 TOP2BQ02880 1626 aa23.96■■□□□ 1.43
LRP11-201ENST00000239367 CLSPNQ9HAW4 1339 aa23.92■■□□□ 1.42
LRP11-201ENST00000239367 BCL11AQ9H165 835 aa23.9■■□□□ 1.42
LRP11-201ENST00000239367 ERICH3Q5RHP9 1530 aa23.89■■□□□ 1.42
LRP11-201ENST00000239367 BIVM-ERCC5R4GMW8 1640 aa23.88■■□□□ 1.41
LRP11-201ENST00000239367 ANP32EQ9BTT0 268 aa23.85■■□□□ 1.41
LRP11-201ENST00000239367 TSHZ2Q9NRE2 1034 aa23.85■■□□□ 1.41
LRP11-201ENST00000239367 PRXQ9BXM0 1461 aa23.83■■□□□ 1.4
LRP11-201ENST00000239367 ARAP1Q96P48 1450 aa23.76■■□□□ 1.39
LRP11-201ENST00000239367 DHX57Q6P158 1386 aaKnown RBP23.75■■□□□ 1.39
LRP11-201ENST00000239367 ITGAEP38570 1179 aa23.71■■□□□ 1.39
LRP11-201ENST00000239367 KCNH8Q96L42 1107 aa23.7■■□□□ 1.38
LRP11-201ENST00000239367 RRBP1Q9P2E9 1410 aaKnown RBP23.68■■□□□ 1.38
LRP11-201ENST00000239367 FKBP8Q14318 412 aa23.67■■□□□ 1.38
LRP11-201ENST00000239367 CUX2O14529 1486 aa23.64■■□□□ 1.37
LRP11-201ENST00000239367 HMGXB3Q12766 1538 aa23.64■■□□□ 1.37
LRP11-201ENST00000239367 KIF27Q86VH2 1401 aa23.63■■□□□ 1.37
LRP11-201ENST00000239367 KANK4Q5T7N3 995 aaPredicted RBP23.62■■□□□ 1.37
LRP11-201ENST00000239367 CUX1P39880 1505 aa23.61■■□□□ 1.37
LRP11-201ENST00000239367 NCAPD3P42695 1498 aa23.6■■□□□ 1.37
LRP11-201ENST00000239367 CCNB3Q8WWL7 1395 aa23.52■■□□□ 1.36
LRP11-201ENST00000239367 ARHGAP35Q9NRY4 1499 aa23.5■■□□□ 1.35
LRP11-201ENST00000239367 CFTRP13569 1480 aa23.5■■□□□ 1.35
LRP11-201ENST00000239367 NEFLP07196 543 aa23.48■■□□□ 1.35
LRP11-201ENST00000239367 TRIM52Q96A61 297 aa23.45■■□□□ 1.34
LRP11-201ENST00000239367 HIRIP3Q9BW71 556 aaPredicted RBP23.44■■□□□ 1.34
LRP11-201ENST00000239367 MAP3K1Q13233 1512 aa23.43■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms