RNA–Protein interactions for RNA: ENST00000530267.5

USP35-204, Transcript of ubiquitin specific peptidase 35, humanhuman

TSL 2 BASIC

Gene USP35, Length 2,419 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP35-204ENST00000530267 NISCHQ9Y2I1 1504 aa32.49■■■□□ 2.79
USP35-204ENST00000530267 CCDC180Q9P1Z9 1646 aa27.78■■■□□ 2.04
USP35-204ENST00000530267 SHROOM4Q9ULL8 1493 aa27.51■■□□□ 1.99
USP35-204ENST00000530267 ZCCHC6Q5VYS8 1495 aaKnown RBP27.38■■□□□ 1.97
USP35-204ENST00000530267 DCAF8L2P0C7V8 631 aa27.23■■□□□ 1.95
USP35-204ENST00000530267 SUPT5HO00267 1087 aaKnown RBP26.78■■□□□ 1.88
USP35-204ENST00000530267 DCAF1Q9Y4B6 1507 aa26.6■■□□□ 1.85
USP35-204ENST00000530267 ABCC9O60706 1549 aa26.22■■□□□ 1.79
USP35-204ENST00000530267 SCRIBQ14160 1630 aa26.06■■□□□ 1.76
USP35-204ENST00000530267 MYO15BQ96JP2 1530 aa25.98■■□□□ 1.75
USP35-204ENST00000530267 NACADO15069 1562 aa25.81■■□□□ 1.72
USP35-204ENST00000530267 CHIC1Q5VXU3 224 aa25.75■■□□□ 1.71
USP35-204ENST00000530267 RSF1Q96T23 1441 aaPredicted RBP25.56■■□□□ 1.68
USP35-204ENST00000530267 RB1CC1Q8TDY2 1594 aa25.51■■□□□ 1.67
USP35-204ENST00000530267 CECR2Q9BXF3 1484 aa25.41■■□□□ 1.66
USP35-204ENST00000530267 MROH2BQ7Z745 1585 aa25.26■■□□□ 1.63
USP35-204ENST00000530267 UNC13AQ9UPW8 1703 aa25.12■■□□□ 1.61
USP35-204ENST00000530267 WIZO95785 1651 aa25.11■■□□□ 1.61
USP35-204ENST00000530267 LOC105371045A0A1W2PR82 267 aa25.03■■□□□ 1.6
USP35-204ENST00000530267 PABPN1Q86U42 306 aaKnown RBP eCLIP25.03■■□□□ 1.6
USP35-204ENST00000530267 BAZ1AQ9NRL2 1556 aaPredicted RBP24.98■■□□□ 1.59
USP35-204ENST00000530267 TRIM41Q8WV44 630 aa24.94■■□□□ 1.58
USP35-204ENST00000530267 SMARCA4P51532 1647 aa24.83■■□□□ 1.57
USP35-204ENST00000530267 BICRAQ9NZM4 1560 aa24.81■■□□□ 1.56
USP35-204ENST00000530267 FAM9AQ8IZU1 332 aaPredicted RBP24.77■■□□□ 1.56
USP35-204ENST00000530267 TOP2AP11388 1531 aaKnown RBP24.67■■□□□ 1.54
USP35-204ENST00000530267 EHMT2Q96KQ7 1210 aa24.64■■□□□ 1.53
USP35-204ENST00000530267 CCDC88BA6NC98 1476 aa24.6■■□□□ 1.53
USP35-204ENST00000530267 PCGF6Q9BYE7 350 aa24.56■■□□□ 1.52
USP35-204ENST00000530267 SMARCA2P51531 1590 aa24.53■■□□□ 1.52
USP35-204ENST00000530267 EIF4G1Q04637 1599 aaKnown RBP24.5■■□□□ 1.51
USP35-204ENST00000530267 ABCC8Q09428 1581 aa24.42■■□□□ 1.5
USP35-204ENST00000530267 PEG3Q9GZU2 1588 aa24.33■■□□□ 1.49
USP35-204ENST00000530267 ATAD2BQ9ULI0 1458 aa24.31■■□□□ 1.48
USP35-204ENST00000530267 BAZ1BQ9UIG0 1483 aaKnown RBP24.25■■□□□ 1.47
USP35-204ENST00000530267 HRCP23327 699 aa24.18■■□□□ 1.46
USP35-204ENST00000530267 TRIM26Q12899 539 aaPredicted RBP24.13■■□□□ 1.45
USP35-204ENST00000530267 SOGA1O94964 1423 aa24.1■■□□□ 1.45
USP35-204ENST00000530267 WRNQ14191 1432 aaPredicted RBP eCLIP24.03■■□□□ 1.44
USP35-204ENST00000530267 RUSC2Q8N2Y8 1516 aa24.01■■□□□ 1.43
USP35-204ENST00000530267 PPARGC1BQ86YN6 1023 aaKnown RBP23.98■■□□□ 1.43
USP35-204ENST00000530267 SYNJ1O43426 1573 aa23.92■■□□□ 1.42
USP35-204ENST00000530267 CSRNP3Q8WYN3 585 aa23.92■■□□□ 1.42
USP35-204ENST00000530267 NCAPD3P42695 1498 aa23.89■■□□□ 1.42
USP35-204ENST00000530267 UBTFP17480 764 aaKnown RBP23.84■■□□□ 1.41
USP35-204ENST00000530267 HMGXB3Q12766 1538 aa23.84■■□□□ 1.41
USP35-204ENST00000530267 EEA1Q15075 1411 aa23.82■■□□□ 1.4
USP35-204ENST00000530267 CEP162Q5TB80 1403 aa23.77■■□□□ 1.4
USP35-204ENST00000530267 TNIKQ9UKE5 1360 aa23.73■■□□□ 1.39
USP35-204ENST00000530267 TTBK1Q5TCY1 1321 aaPredicted RBP23.71■■□□□ 1.39
USP35-204ENST00000530267 GOLGA3Q08378 1498 aa23.68■■□□□ 1.38
USP35-204ENST00000530267 TOP2BQ02880 1626 aa23.65■■□□□ 1.38
USP35-204ENST00000530267 CFTRP13569 1480 aa23.59■■□□□ 1.37
USP35-204ENST00000530267 CEP164Q9UPV0 1460 aa23.59■■□□□ 1.37
USP35-204ENST00000530267 CC2D2AQ9P2K1 1620 aa23.57■■□□□ 1.36
USP35-204ENST00000530267 RANGAP1P46060 587 aaPredicted RBP23.57■■□□□ 1.36
USP35-204ENST00000530267 BIVM-ERCC5R4GMW8 1640 aa23.55■■□□□ 1.36
USP35-204ENST00000530267 CUX1P39880 1505 aa23.54■■□□□ 1.36
USP35-204ENST00000530267 KIF21BO75037 1637 aa23.53■■□□□ 1.36
USP35-204ENST00000530267 RAPGEF2Q9Y4G8 1499 aa23.52■■□□□ 1.36
USP35-204ENST00000530267 CADPSQ9ULU8 1353 aa23.44■■□□□ 1.34
USP35-204ENST00000530267 CLIP1P30622 1438 aa23.42■■□□□ 1.34
USP35-204ENST00000530267 ZEB1P37275 1124 aaPredicted RBP23.35■■□□□ 1.33
USP35-204ENST00000530267 PRDM2Q13029 1718 aa23.34■■□□□ 1.33
USP35-204ENST00000530267 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.33■■□□□ 1.33
USP35-204ENST00000530267 KIF27Q86VH2 1401 aa23.33■■□□□ 1.33
USP35-204ENST00000530267 PRXQ9BXM0 1461 aa23.3■■□□□ 1.32
USP35-204ENST00000530267 VPS8Q8N3P4 1428 aa23.23■■□□□ 1.31
USP35-204ENST00000530267 NESP48681 1621 aa23.23■■□□□ 1.31
USP35-204ENST00000530267 CCER1Q8TC90 406 aaPredicted RBP23.23■■□□□ 1.31
USP35-204ENST00000530267 CUX2O14529 1486 aa23.22■■□□□ 1.31
USP35-204ENST00000530267 FANCD2Q9BXW9 1451 aa23.22■■□□□ 1.31
USP35-204ENST00000530267 ERICH3Q5RHP9 1530 aa23.22■■□□□ 1.31
USP35-204ENST00000530267 FGD5Q6ZNL6 1462 aa23.2■■□□□ 1.3
USP35-204ENST00000530267 APLP2Q06481 763 aa23.2■■□□□ 1.3
USP35-204ENST00000530267 DNAJC5BQ9UF47 199 aa23.18■■□□□ 1.3
USP35-204ENST00000530267 IGF1RP08069 1367 aa23.12■■□□□ 1.29
USP35-204ENST00000530267 ARAP1Q96P48 1450 aa23.07■■□□□ 1.28
USP35-204ENST00000530267 HNRNPUL2Q1KMD3 747 aaKnown RBP23.06■■□□□ 1.28
USP35-204ENST00000530267 RAD54L2Q9Y4B4 1467 aa23.05■■□□□ 1.28
USP35-204ENST00000530267 CARMIL1Q5VZK9 1371 aa23.03■■□□□ 1.28
USP35-204ENST00000530267 TOPBP1Q92547 1522 aa23.02■■□□□ 1.28
USP35-204ENST00000530267 DNMBPQ6XZF7 1577 aa23.01■■□□□ 1.27
USP35-204ENST00000530267 POLA1P09884 1462 aaPredicted RBP22.98■■□□□ 1.27
USP35-204ENST00000530267 ARHGAP35Q9NRY4 1499 aa22.96■■□□□ 1.27
USP35-204ENST00000530267 KANK4Q5T7N3 995 aaPredicted RBP22.96■■□□□ 1.27
USP35-204ENST00000530267 LAMC3Q9Y6N6 1575 aa22.94■■□□□ 1.26
USP35-204ENST00000530267 URB2Q14146 1524 aaKnown RBP22.91■■□□□ 1.26
USP35-204ENST00000530267 ABCA10Q8WWZ4 1543 aa22.89■■□□□ 1.25
USP35-204ENST00000530267 P3H3Q8IVL6 736 aa22.86■■□□□ 1.25
USP35-204ENST00000530267 PDS5BQ9NTI5 1447 aa22.85■■□□□ 1.25
USP35-204ENST00000530267 TDRD9Q8NDG6 1382 aaKnown RBP22.82■■□□□ 1.24
USP35-204ENST00000530267 KIF21AQ7Z4S6 1674 aa22.79■■□□□ 1.24
USP35-204ENST00000530267 ATP1B4Q9UN42 357 aaPredicted RBP22.75■■□□□ 1.23
USP35-204ENST00000530267 WDR97A6NE52 1622 aa22.69■■□□□ 1.22
USP35-204ENST00000530267 CUL7Q14999 1698 aa22.68■■□□□ 1.22
USP35-204ENST00000530267 FHOD3Q2V2M9 1422 aa22.67■■□□□ 1.22
USP35-204ENST00000530267 GAPVD1Q14C86 1478 aa22.67■■□□□ 1.22
USP35-204ENST00000530267 ITGAEP38570 1179 aa22.66■■□□□ 1.22
USP35-204ENST00000530267 ABCA5Q8WWZ7 1642 aa22.63■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms