Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 C11orf97-201ENST00000542198 701 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
HLA-DOAP06340 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC16.66■□□□□ 0.26
HLA-DOAP06340 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC16.66■□□□□ 0.26
HLA-DOAP06340 DCTPP1-202ENST00000565758 749 ntTSL 3 BASIC16.66■□□□□ 0.26
HLA-DOAP06340 AC091769.1-201ENST00000619576 568 ntBASIC16.66■□□□□ 0.26
HLA-DOAP06340 AC027559.1-203ENST00000635726 517 ntTSL 5 BASIC16.66■□□□□ 0.26
HLA-DOAP06340 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HLA-DOAP06340 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
HLA-DOAP06340 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
HLA-DOAP06340 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HLA-DOAP06340 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
HLA-DOAP06340 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HLA-DOAP06340 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HLA-DOAP06340 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HLA-DOAP06340 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
HLA-DOAP06340 AC068760.1-201ENST00000493579 1953 ntBASIC16.66■□□□□ 0.26
HLA-DOAP06340 SNX19-213ENST00000534726 1656 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HLA-DOAP06340 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
HLA-DOAP06340 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HLA-DOAP06340 PHB-210ENST00000511832 1509 ntTSL 2 BASIC16.65■□□□□ 0.26
HLA-DOAP06340 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HLA-DOAP06340 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HLA-DOAP06340 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC16.65■□□□□ 0.26
HLA-DOAP06340 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HLA-DOAP06340 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC16.65■□□□□ 0.26
HLA-DOAP06340 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC16.65■□□□□ 0.26
HLA-DOAP06340 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC16.65■□□□□ 0.26
HLA-DOAP06340 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HLA-DOAP06340 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HLA-DOAP06340 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC16.65■□□□□ 0.26
HLA-DOAP06340 SEC61B-201ENST00000223641 545 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HLA-DOAP06340 TCEA3-201ENST00000374601 1197 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HLA-DOAP06340 EEF1B2-203ENST00000392222 1098 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HLA-DOAP06340 LIF-202ENST00000403987 592 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HLA-DOAP06340 NUPL2-202ENST00000410002 680 ntTSL 2 BASIC16.65■□□□□ 0.26
HLA-DOAP06340 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
HLA-DOAP06340 GS1-124K5.4-201ENST00000445681 540 ntTSL 2 BASIC16.65■□□□□ 0.26
HLA-DOAP06340 AC114501.1-201ENST00000445949 172 ntBASIC16.65■□□□□ 0.26
HLA-DOAP06340 AL713999.1-201ENST00000473363 753 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
HLA-DOAP06340 SEC61B-203ENST00000498603 587 ntTSL 3 BASIC16.65■□□□□ 0.26
HLA-DOAP06340 LINC00634-202ENST00000505157 222 ntBASIC16.65■□□□□ 0.26
HLA-DOAP06340 RN7SKP155-201ENST00000516031 288 ntBASIC16.65■□□□□ 0.26
HLA-DOAP06340 AP001269.2-201ENST00000590055 379 ntTSL 3 BASIC16.65■□□□□ 0.26
HLA-DOAP06340 AC025048.2-201ENST00000590744 786 ntTSL 2 BASIC16.65■□□□□ 0.26
HLA-DOAP06340 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
HLA-DOAP06340 LTF-203ENST00000426532 2494 ntTSL 2 BASIC16.65■□□□□ 0.26
HLA-DOAP06340 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HLA-DOAP06340 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
HLA-DOAP06340 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
HLA-DOAP06340 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC16.65■□□□□ 0.26
HLA-DOAP06340 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
HLA-DOAP06340 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HLA-DOAP06340 TSPAN3-205ENST00000558745 1340 ntTSL 5 BASIC16.65■□□□□ 0.26
HLA-DOAP06340 LAMA1-209ENST00000638611 1310 ntTSL 5 BASIC16.65■□□□□ 0.26
HLA-DOAP06340 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC16.65■□□□□ 0.26
HLA-DOAP06340 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HLA-DOAP06340 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HLA-DOAP06340 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC16.65■□□□□ 0.26
HLA-DOAP06340 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HLA-DOAP06340 SERPINB6-206ENST00000380546 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
HLA-DOAP06340 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC16.64■□□□□ 0.26
HLA-DOAP06340 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.26
HLA-DOAP06340 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
HLA-DOAP06340 LIPA-205ENST00000456827 2527 ntTSL 3 BASIC16.64■□□□□ 0.25
HLA-DOAP06340 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HLA-DOAP06340 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
HLA-DOAP06340 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HLA-DOAP06340 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
HLA-DOAP06340 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
HLA-DOAP06340 C8G-201ENST00000224181 855 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HLA-DOAP06340 TMSB15A-201ENST00000289373 685 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HLA-DOAP06340 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HLA-DOAP06340 CHTF8-202ENST00000398235 1073 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
HLA-DOAP06340 OR52M2P-201ENST00000414298 959 ntBASIC16.64■□□□□ 0.25
HLA-DOAP06340 AC018814.1-201ENST00000418972 357 ntTSL 3 BASIC16.64■□□□□ 0.25
HLA-DOAP06340 AL390778.2-201ENST00000420883 886 ntTSL 3 BASIC16.64■□□□□ 0.25
HLA-DOAP06340 AC097065.1-201ENST00000425737 517 ntBASIC16.64■□□□□ 0.25
HLA-DOAP06340 GNG10P1-201ENST00000452289 199 ntBASIC16.64■□□□□ 0.25
HLA-DOAP06340 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC16.64■□□□□ 0.25
HLA-DOAP06340 GLYCTK-204ENST00000471180 992 ntTSL 2 BASIC16.64■□□□□ 0.25
HLA-DOAP06340 PRSS3P1-201ENST00000503996 742 ntBASIC16.64■□□□□ 0.25
HLA-DOAP06340 IGHV1-12-201ENST00000518307 205 ntBASIC16.64■□□□□ 0.25
HLA-DOAP06340 ADM-203ENST00000525063 867 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
HLA-DOAP06340 AP003390.1-201ENST00000533253 523 ntTSL 5 BASIC16.64■□□□□ 0.25
HLA-DOAP06340 VENTXP3-201ENST00000546480 773 ntBASIC16.64■□□□□ 0.25
HLA-DOAP06340 NPTN-204ENST00000562924 1094 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HLA-DOAP06340 AC137723.1-201ENST00000584705 709 ntTSL 3 BASIC16.64■□□□□ 0.25
HLA-DOAP06340 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HLA-DOAP06340 FXYD3-204ENST00000603181 758 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
HLA-DOAP06340 SARS-202ENST00000369923 1882 ntTSL 5 BASIC16.64■□□□□ 0.25
HLA-DOAP06340 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HLA-DOAP06340 GOLGA8K-202ENST00000512626 1894 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
HLA-DOAP06340 GOLGA8T-202ENST00000569052 1896 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
HLA-DOAP06340 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC16.64■□□□□ 0.25
HLA-DOAP06340 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HLA-DOAP06340 GSN-203ENST00000373808 2664 ntTSL 2 BASIC16.64■□□□□ 0.25
HLA-DOAP06340 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HLA-DOAP06340 COCH-203ENST00000460581 2688 ntTSL 2 BASIC16.64■□□□□ 0.25
HLA-DOAP06340 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HLA-DOAP06340 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms