Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 PTN-202ENST00000393083 1599 ntTSL 5 BASIC13.6□□□□□ -0.23
VPS13AQ96RL7 FAM27E3-201ENST00000418795 1593 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
VPS13AQ96RL7 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC13.59□□□□□ -0.23
VPS13AQ96RL7 HIST2H2BE-201ENST00000369155 2194 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
VPS13AQ96RL7 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
VPS13AQ96RL7 PRAME-214ENST00000543184 2758 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
VPS13AQ96RL7 TUBA3GP-201ENST00000410028 1325 ntBASIC13.59□□□□□ -0.23
VPS13AQ96RL7 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC13.59□□□□□ -0.23
VPS13AQ96RL7 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
VPS13AQ96RL7 LAMP2-203ENST00000434600 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
VPS13AQ96RL7 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
VPS13AQ96RL7 RDH12-203ENST00000551171 1879 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
VPS13AQ96RL7 TAC4-203ENST00000352793 564 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
VPS13AQ96RL7 RNF7-202ENST00000393000 805 ntTSL 2 BASIC13.59□□□□□ -0.23
VPS13AQ96RL7 SNU13-204ENST00000402458 462 ntTSL 3 BASIC13.59□□□□□ -0.23
VPS13AQ96RL7 LINC01508-201ENST00000425666 1013 ntTSL 3 BASIC13.59□□□□□ -0.23
VPS13AQ96RL7 AL137077.1-201ENST00000442115 528 ntBASIC13.59□□□□□ -0.23
VPS13AQ96RL7 FTH1-205ENST00000529631 507 ntTSL 4 BASIC13.59□□□□□ -0.23
VPS13AQ96RL7 AC008555.6-201ENST00000605047 458 ntTSL 2 BASIC13.59□□□□□ -0.23
VPS13AQ96RL7 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC13.59□□□□□ -0.23
VPS13AQ96RL7 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
VPS13AQ96RL7 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
VPS13AQ96RL7 CPT1A-202ENST00000376618 2635 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
VPS13AQ96RL7 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
VPS13AQ96RL7 AC092143.1-201ENST00000556922 2776 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
VPS13AQ96RL7 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
VPS13AQ96RL7 RAB8A-202ENST00000586682 1315 ntTSL 2 BASIC13.59□□□□□ -0.23
VPS13AQ96RL7 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
VPS13AQ96RL7 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
VPS13AQ96RL7 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
VPS13AQ96RL7 HIGD2B-201ENST00000311755 1116 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
VPS13AQ96RL7 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
VPS13AQ96RL7 SPATA21-202ENST00000375577 1136 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
VPS13AQ96RL7 AC027682.3-201ENST00000564717 207 ntTSL 5 BASIC13.59□□□□□ -0.23
VPS13AQ96RL7 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC13.59□□□□□ -0.23
VPS13AQ96RL7 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
VPS13AQ96RL7 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC13.59□□□□□ -0.23
VPS13AQ96RL7 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
VPS13AQ96RL7 EFHC1-230ENST00000637263 2089 ntTSL 5 BASIC13.59□□□□□ -0.23
VPS13AQ96RL7 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC13.59□□□□□ -0.23
VPS13AQ96RL7 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
VPS13AQ96RL7 SLC38A5-210ENST00000595796 2659 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
VPS13AQ96RL7 ATP12A-201ENST00000218548 3732 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
VPS13AQ96RL7 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
VPS13AQ96RL7 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
VPS13AQ96RL7 FES-204ENST00000414248 2327 ntTSL 2 BASIC13.59□□□□□ -0.23
VPS13AQ96RL7 GULOP-201ENST00000454030 748 ntBASIC13.59□□□□□ -0.23
VPS13AQ96RL7 RN7SL2-201ENST00000490232 300 ntBASIC13.59□□□□□ -0.23
VPS13AQ96RL7 GABARAPL1-203ENST00000535576 792 ntTSL 5 BASIC13.59□□□□□ -0.23
VPS13AQ96RL7 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC13.59□□□□□ -0.23
VPS13AQ96RL7 RN7SL4P-201ENST00000584058 295 ntBASIC13.59□□□□□ -0.23
VPS13AQ96RL7 PDLIM1P1-201ENST00000604187 969 ntBASIC13.59□□□□□ -0.23
VPS13AQ96RL7 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC13.58□□□□□ -0.23
VPS13AQ96RL7 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC13.58□□□□□ -0.23
VPS13AQ96RL7 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
VPS13AQ96RL7 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
VPS13AQ96RL7 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
VPS13AQ96RL7 TRAPPC4-214ENST00000533632 1759 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
VPS13AQ96RL7 KRT37-201ENST00000225550 1475 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
VPS13AQ96RL7 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
VPS13AQ96RL7 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
VPS13AQ96RL7 OXGR1-204ENST00000543457 1305 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
VPS13AQ96RL7 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
VPS13AQ96RL7 TMBIM7P-203ENST00000641617 1718 ntBASIC13.58□□□□□ -0.24
VPS13AQ96RL7 ZMYND15-206ENST00000592813 2274 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
VPS13AQ96RL7 AL928654.5-201ENST00000624831 2501 ntBASIC13.58□□□□□ -0.24
VPS13AQ96RL7 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
VPS13AQ96RL7 IMMP1L-201ENST00000278200 795 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
VPS13AQ96RL7 AC011997.1-201ENST00000409845 1032 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
VPS13AQ96RL7 IDI2-AS1-204ENST00000437374 896 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
VPS13AQ96RL7 CACNA1C-IT3-201ENST00000542680 622 ntTSL 3 BASIC13.58□□□□□ -0.24
VPS13AQ96RL7 MIR7704-201ENST00000610524 59 ntBASIC13.58□□□□□ -0.24
VPS13AQ96RL7 WASH5P-206ENST00000632506 1147 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
VPS13AQ96RL7 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
VPS13AQ96RL7 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
VPS13AQ96RL7 RBMS3-210ENST00000456853 1394 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
VPS13AQ96RL7 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
VPS13AQ96RL7 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
VPS13AQ96RL7 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
VPS13AQ96RL7 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC13.58□□□□□ -0.24
VPS13AQ96RL7 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC13.58□□□□□ -0.24
VPS13AQ96RL7 AC008620.2-201ENST00000510294 1569 ntBASIC13.58□□□□□ -0.24
VPS13AQ96RL7 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
VPS13AQ96RL7 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
VPS13AQ96RL7 GAPDH-204ENST00000396859 1256 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
VPS13AQ96RL7 PRDX3P2-201ENST00000447051 611 ntBASIC13.58□□□□□ -0.24
VPS13AQ96RL7 AC069421.1-201ENST00000447462 323 ntBASIC13.58□□□□□ -0.24
VPS13AQ96RL7 RN7SL677P-201ENST00000466970 319 ntBASIC13.58□□□□□ -0.24
VPS13AQ96RL7 CAP2-207ENST00000493172 861 ntTSL 2 BASIC13.58□□□□□ -0.24
VPS13AQ96RL7 LINC01543-201ENST00000578367 900 ntTSL 5 BASIC13.58□□□□□ -0.24
VPS13AQ96RL7 PDZRN3-AS1-203ENST00000608743 780 ntTSL 5 BASIC13.58□□□□□ -0.24
VPS13AQ96RL7 MIR6871-201ENST00000613433 56 ntBASIC13.58□□□□□ -0.24
VPS13AQ96RL7 GARS-210ENST00000627489 324 ntTSL 4 BASIC13.58□□□□□ -0.24
VPS13AQ96RL7 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
VPS13AQ96RL7 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC13.58□□□□□ -0.24
VPS13AQ96RL7 FGGY-204ENST00000371218 2052 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
VPS13AQ96RL7 EDEM2-201ENST00000374491 1756 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
VPS13AQ96RL7 NR4A1-202ENST00000360284 2589 ntTSL 2 BASIC13.57□□□□□ -0.24
VPS13AQ96RL7 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC13.57□□□□□ -0.24
VPS13AQ96RL7 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC13.57□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 89.1 ms