RNA–Protein interactions for RNA: ENST00000393083.2

PTN-202, Transcript of pleiotrophin, humanhuman

TSL 5 BASIC

Gene PTN, Length 1,599 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTN-202ENST00000393083 NISCHQ9Y2I1 1504 aa32.16■■■□□ 2.74
PTN-202ENST00000393083 CCDC180Q9P1Z9 1646 aa28.47■■■□□ 2.15
PTN-202ENST00000393083 ABCC9O60706 1549 aa27.73■■■□□ 2.03
PTN-202ENST00000393083 ZCCHC6Q5VYS8 1495 aaKnown RBP26.83■■□□□ 1.89
PTN-202ENST00000393083 DCAF8L2P0C7V8 631 aa26.77■■□□□ 1.88
PTN-202ENST00000393083 NACADO15069 1562 aa26.76■■□□□ 1.87
PTN-202ENST00000393083 RB1CC1Q8TDY2 1594 aa26.72■■□□□ 1.87
PTN-202ENST00000393083 MYO15BQ96JP2 1530 aa26.68■■□□□ 1.86
PTN-202ENST00000393083 DCAF1Q9Y4B6 1507 aa26.63■■□□□ 1.85
PTN-202ENST00000393083 UNC13AQ9UPW8 1703 aa26.11■■□□□ 1.77
PTN-202ENST00000393083 SCRIBQ14160 1630 aa26■■□□□ 1.75
PTN-202ENST00000393083 PABPN1Q86U42 306 aaKnown RBP eCLIP25.96■■□□□ 1.75
PTN-202ENST00000393083 BICRAQ9NZM4 1560 aa25.96■■□□□ 1.75
PTN-202ENST00000393083 SHROOM4Q9ULL8 1493 aa25.67■■□□□ 1.7
PTN-202ENST00000393083 DNAJC5BQ9UF47 199 aa25.37■■□□□ 1.65
PTN-202ENST00000393083 AEBP2Q6ZN18 517 aaPredicted RBP25.25■■□□□ 1.63
PTN-202ENST00000393083 EIF4G1Q04637 1599 aaKnown RBP25.24■■□□□ 1.63
PTN-202ENST00000393083 CC2D2AQ9P2K1 1620 aa25.08■■□□□ 1.61
PTN-202ENST00000393083 CECR2Q9BXF3 1484 aa25.06■■□□□ 1.6
PTN-202ENST00000393083 SMARCA4P51532 1647 aa24.9■■□□□ 1.58
PTN-202ENST00000393083 BAZ1AQ9NRL2 1556 aaPredicted RBP24.89■■□□□ 1.57
PTN-202ENST00000393083 MROH2BQ7Z745 1585 aa24.8■■□□□ 1.56
PTN-202ENST00000393083 ATAD2BQ9ULI0 1458 aa24.75■■□□□ 1.55
PTN-202ENST00000393083 NCAPD3P42695 1498 aa24.72■■□□□ 1.55
PTN-202ENST00000393083 SMARCA2P51531 1590 aa24.69■■□□□ 1.54
PTN-202ENST00000393083 PEG3Q9GZU2 1588 aa24.68■■□□□ 1.54
PTN-202ENST00000393083 RSF1Q96T23 1441 aaPredicted RBP24.59■■□□□ 1.53
PTN-202ENST00000393083 HMGXB3Q12766 1538 aa24.58■■□□□ 1.53
PTN-202ENST00000393083 BAZ1BQ9UIG0 1483 aaKnown RBP24.52■■□□□ 1.52
PTN-202ENST00000393083 WIZO95785 1651 aa24.51■■□□□ 1.51
PTN-202ENST00000393083 TOP2AP11388 1531 aaKnown RBP24.26■■□□□ 1.47
PTN-202ENST00000393083 NESP48681 1621 aa24.06■■□□□ 1.44
PTN-202ENST00000393083 SUPT5HO00267 1087 aaKnown RBP24.06■■□□□ 1.44
PTN-202ENST00000393083 CCDC88BA6NC98 1476 aa24.01■■□□□ 1.43
PTN-202ENST00000393083 CADPSQ9ULU8 1353 aa24■■□□□ 1.43
PTN-202ENST00000393083 LAMC3Q9Y6N6 1575 aa24■■□□□ 1.43
PTN-202ENST00000393083 CFTRP13569 1480 aa23.9■■□□□ 1.42
PTN-202ENST00000393083 ERCC6Q03468 1493 aa23.85■■□□□ 1.41
PTN-202ENST00000393083 PDS5BQ9NTI5 1447 aa23.84■■□□□ 1.41
PTN-202ENST00000393083 KIF21AQ7Z4S6 1674 aa23.74■■□□□ 1.39
PTN-202ENST00000393083 FANCD2Q9BXW9 1451 aa23.71■■□□□ 1.39
PTN-202ENST00000393083 PRDM2Q13029 1718 aa23.65■■□□□ 1.38
PTN-202ENST00000393083 CEP164Q9UPV0 1460 aa23.64■■□□□ 1.38
PTN-202ENST00000393083 THOC2Q8NI27 1593 aaKnown RBP23.64■■□□□ 1.37
PTN-202ENST00000393083 CHIC1Q5VXU3 224 aa23.62■■□□□ 1.37
PTN-202ENST00000393083 MRC2Q9UBG0 1479 aa23.59■■□□□ 1.37
PTN-202ENST00000393083 CUX2O14529 1486 aa23.57■■□□□ 1.36
PTN-202ENST00000393083 WDR62O43379 1518 aa23.51■■□□□ 1.35
PTN-202ENST00000393083 URB2Q14146 1524 aaKnown RBP23.48■■□□□ 1.35
PTN-202ENST00000393083 TOPBP1Q92547 1522 aa23.35■■□□□ 1.33
PTN-202ENST00000393083 ABCC8Q09428 1581 aa23.34■■□□□ 1.33
PTN-202ENST00000393083 DNMBPQ6XZF7 1577 aa23.32■■□□□ 1.32
PTN-202ENST00000393083 CUX1P39880 1505 aa23.25■■□□□ 1.31
PTN-202ENST00000393083 POLA1P09884 1462 aaPredicted RBP23.17■■□□□ 1.3
PTN-202ENST00000393083 IFT140Q96RY7 1462 aa23.16■■□□□ 1.3
PTN-202ENST00000393083 WRNQ14191 1432 aaPredicted RBP eCLIP23.15■■□□□ 1.3
PTN-202ENST00000393083 FGD5Q6ZNL6 1462 aa23.13■■□□□ 1.29
PTN-202ENST00000393083 SYNJ1O43426 1573 aa23.09■■□□□ 1.29
PTN-202ENST00000393083 TARBP1Q13395 1621 aaKnown RBP23.08■■□□□ 1.29
PTN-202ENST00000393083 SOGA1O94964 1423 aa23.08■■□□□ 1.28
PTN-202ENST00000393083 TOP2BQ02880 1626 aa23.08■■□□□ 1.28
PTN-202ENST00000393083 RAD54L2Q9Y4B4 1467 aa23.07■■□□□ 1.28
PTN-202ENST00000393083 ZNF608Q9ULD9 1512 aaPredicted RBP23.06■■□□□ 1.28
PTN-202ENST00000393083 BIVM-ERCC5R4GMW8 1640 aa23.06■■□□□ 1.28
PTN-202ENST00000393083 AQRO60306 1485 aaKnown RBP eCLIP22.95■■□□□ 1.26
PTN-202ENST00000393083 EIF4G3O43432 1585 aaKnown RBP22.94■■□□□ 1.26
PTN-202ENST00000393083 TDRD9Q8NDG6 1382 aaKnown RBP22.93■■□□□ 1.26
PTN-202ENST00000393083 ABCA10Q8WWZ4 1543 aa22.92■■□□□ 1.26
PTN-202ENST00000393083 WDR97A6NE52 1622 aa22.91■■□□□ 1.26
PTN-202ENST00000393083 GAPVD1Q14C86 1478 aa22.81■■□□□ 1.24
PTN-202ENST00000393083 ABCA5Q8WWZ7 1642 aa22.8■■□□□ 1.24
PTN-202ENST00000393083 GRIN2BQ13224 1484 aa22.78■■□□□ 1.24
PTN-202ENST00000393083 SNAPC4Q5SXM2 1469 aa22.72■■□□□ 1.23
PTN-202ENST00000393083 TRIM41Q8WV44 630 aa22.72■■□□□ 1.23
PTN-202ENST00000393083 PBRM1Q86U86 1689 aa22.7■■□□□ 1.22
PTN-202ENST00000393083 MAGI1Q96QZ7 1491 aaPredicted RBP22.69■■□□□ 1.22
PTN-202ENST00000393083 DNAJC5Q9H3Z4 198 aa22.68■■□□□ 1.22
PTN-202ENST00000393083 KIF27Q86VH2 1401 aa22.64■■□□□ 1.22
PTN-202ENST00000393083 ERICH3Q5RHP9 1530 aa22.64■■□□□ 1.21
PTN-202ENST00000393083 OSCARQ8IYS5 282 aa22.63■■□□□ 1.21
PTN-202ENST00000393083 SYNJ2O15056 1496 aa22.61■■□□□ 1.21
PTN-202ENST00000393083 FBLN2P98095 1184 aa22.6■■□□□ 1.21
PTN-202ENST00000393083 CHD1O14646 1710 aa22.59■■□□□ 1.21
PTN-202ENST00000393083 CHMP7Q8WUX9 453 aaPredicted RBP22.59■■□□□ 1.21
PTN-202ENST00000393083 IGF1RP08069 1367 aa22.58■■□□□ 1.21
PTN-202ENST00000393083 ADAMTS12P58397 1594 aa22.56■■□□□ 1.2
PTN-202ENST00000393083 FHAD1B1AJZ9 1412 aa22.56■■□□□ 1.2
PTN-202ENST00000393083 RUSC2Q8N2Y8 1516 aa22.53■■□□□ 1.2
PTN-202ENST00000393083 GRIN2AQ12879 1464 aa22.48■■□□□ 1.19
PTN-202ENST00000393083 CUL7Q14999 1698 aa22.44■■□□□ 1.18
PTN-202ENST00000393083 CARMIL1Q5VZK9 1371 aa22.42■■□□□ 1.18
PTN-202ENST00000393083 NUP160Q12769 1436 aa22.4■■□□□ 1.18
PTN-202ENST00000393083 CLASP1Q7Z460 1538 aa22.4■■□□□ 1.18
PTN-202ENST00000393083 CEP170Q5SW79 1584 aa22.37■■□□□ 1.17
PTN-202ENST00000393083 EEA1Q15075 1411 aa22.32■■□□□ 1.16
PTN-202ENST00000393083 CSRNP3Q8WYN3 585 aa22.29■■□□□ 1.16
PTN-202ENST00000393083 RAPGEF2Q9Y4G8 1499 aa22.29■■□□□ 1.16
PTN-202ENST00000393083 PRXQ9BXM0 1461 aa22.29■■□□□ 1.16
PTN-202ENST00000393083 ARHGEF11O15085 1522 aa22.26■■□□□ 1.15
PTN-202ENST00000393083 RIMBP3CA6NJZ7 1639 aa22.23■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms