RNA–Protein interactions for RNA: ENST00000429940.6

LINC00839-202, long intergenic non-protein coding RNA 839, humanhuman

TSL 2 BASIC

Gene LINC00839, Length 2,253 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00839-202ENST00000429940 NISCHQ9Y2I1 1504 aa31.05■■■□□ 2.56
LINC00839-202ENST00000429940 CCDC180Q9P1Z9 1646 aa27.02■■□□□ 1.92
LINC00839-202ENST00000429940 SHROOM4Q9ULL8 1493 aa26.1■■□□□ 1.77
LINC00839-202ENST00000429940 DCAF8L2P0C7V8 631 aa26.05■■□□□ 1.76
LINC00839-202ENST00000429940 ABCC9O60706 1549 aa26.04■■□□□ 1.76
LINC00839-202ENST00000429940 ZCCHC6Q5VYS8 1495 aaKnown RBP26■■□□□ 1.75
LINC00839-202ENST00000429940 SUPT5HO00267 1087 aaKnown RBP25.72■■□□□ 1.71
LINC00839-202ENST00000429940 DCAF1Q9Y4B6 1507 aa25.5■■□□□ 1.67
LINC00839-202ENST00000429940 NACADO15069 1562 aa25.25■■□□□ 1.63
LINC00839-202ENST00000429940 MYO15BQ96JP2 1530 aa25.23■■□□□ 1.63
LINC00839-202ENST00000429940 CHIC1Q5VXU3 224 aa25.14■■□□□ 1.62
LINC00839-202ENST00000429940 RB1CC1Q8TDY2 1594 aa25.12■■□□□ 1.61
LINC00839-202ENST00000429940 SCRIBQ14160 1630 aa25.06■■□□□ 1.6
LINC00839-202ENST00000429940 HRCP23327 699 aa24.89■■□□□ 1.58
LINC00839-202ENST00000429940 UNC13AQ9UPW8 1703 aa24.73■■□□□ 1.55
LINC00839-202ENST00000429940 PCGF6Q9BYE7 350 aa24.68■■□□□ 1.54
LINC00839-202ENST00000429940 PABPN1Q86U42 306 aaKnown RBP eCLIP24.63■■□□□ 1.53
LINC00839-202ENST00000429940 BICRAQ9NZM4 1560 aa24.46■■□□□ 1.51
LINC00839-202ENST00000429940 LOC105371045A0A1W2PR82 267 aa24.41■■□□□ 1.5
LINC00839-202ENST00000429940 PPARGC1BQ86YN6 1023 aaKnown RBP24.31■■□□□ 1.48
LINC00839-202ENST00000429940 CECR2Q9BXF3 1484 aa24.29■■□□□ 1.48
LINC00839-202ENST00000429940 TRIM26Q12899 539 aaPredicted RBP24.15■■□□□ 1.46
LINC00839-202ENST00000429940 RSF1Q96T23 1441 aaPredicted RBP24.13■■□□□ 1.45
LINC00839-202ENST00000429940 MROH2BQ7Z745 1585 aa24.07■■□□□ 1.44
LINC00839-202ENST00000429940 TRIM41Q8WV44 630 aa23.94■■□□□ 1.42
LINC00839-202ENST00000429940 BAZ1AQ9NRL2 1556 aaPredicted RBP23.94■■□□□ 1.42
LINC00839-202ENST00000429940 SMARCA4P51532 1647 aa23.91■■□□□ 1.42
LINC00839-202ENST00000429940 WIZO95785 1651 aa23.89■■□□□ 1.41
LINC00839-202ENST00000429940 ZEB1P37275 1124 aaPredicted RBP23.77■■□□□ 1.4
LINC00839-202ENST00000429940 FAM9AQ8IZU1 332 aaPredicted RBP23.76■■□□□ 1.39
LINC00839-202ENST00000429940 EIF4G1Q04637 1599 aaKnown RBP23.73■■□□□ 1.39
LINC00839-202ENST00000429940 ATAD2BQ9ULI0 1458 aa23.59■■□□□ 1.37
LINC00839-202ENST00000429940 EHMT2Q96KQ7 1210 aa23.56■■□□□ 1.36
LINC00839-202ENST00000429940 PEG3Q9GZU2 1588 aa23.52■■□□□ 1.36
LINC00839-202ENST00000429940 TOP2AP11388 1531 aaKnown RBP23.48■■□□□ 1.35
LINC00839-202ENST00000429940 SMARCA2P51531 1590 aa23.48■■□□□ 1.35
LINC00839-202ENST00000429940 CC2D2AQ9P2K1 1620 aa23.47■■□□□ 1.35
LINC00839-202ENST00000429940 BAZ1BQ9UIG0 1483 aaKnown RBP23.44■■□□□ 1.34
LINC00839-202ENST00000429940 NCAPD3P42695 1498 aa23.36■■□□□ 1.33
LINC00839-202ENST00000429940 CCDC88BA6NC98 1476 aa23.36■■□□□ 1.33
LINC00839-202ENST00000429940 DNAJC5BQ9UF47 199 aa23.28■■□□□ 1.32
LINC00839-202ENST00000429940 HMGXB3Q12766 1538 aa23.25■■□□□ 1.31
LINC00839-202ENST00000429940 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.12■■□□□ 1.29
LINC00839-202ENST00000429940 SCAF1Q9H7N4 1312 aaKnown RBP23.11■■□□□ 1.29
LINC00839-202ENST00000429940 ABCC8Q09428 1581 aa23.11■■□□□ 1.29
LINC00839-202ENST00000429940 CCER1Q8TC90 406 aaPredicted RBP23.1■■□□□ 1.29
LINC00839-202ENST00000429940 WRNQ14191 1432 aaPredicted RBP eCLIP23.03■■□□□ 1.28
LINC00839-202ENST00000429940 PELP1Q8IZL8 1130 aaKnown RBP23.02■■□□□ 1.28
LINC00839-202ENST00000429940 CEP162Q5TB80 1403 aa22.98■■□□□ 1.27
LINC00839-202ENST00000429940 SOGA1O94964 1423 aa22.93■■□□□ 1.26
LINC00839-202ENST00000429940 TNIKQ9UKE5 1360 aa22.91■■□□□ 1.26
LINC00839-202ENST00000429940 TTBK1Q5TCY1 1321 aaPredicted RBP22.88■■□□□ 1.25
LINC00839-202ENST00000429940 EEA1Q15075 1411 aa22.88■■□□□ 1.25
LINC00839-202ENST00000429940 NESP48681 1621 aa22.82■■□□□ 1.24
LINC00839-202ENST00000429940 CSRNP3Q8WYN3 585 aa22.82■■□□□ 1.24
LINC00839-202ENST00000429940 CFTRP13569 1480 aa22.82■■□□□ 1.24
LINC00839-202ENST00000429940 ACIN1Q9UKV3 1341 aaKnown RBP22.81■■□□□ 1.24
LINC00839-202ENST00000429940 CADPSQ9ULU8 1353 aa22.81■■□□□ 1.24
LINC00839-202ENST00000429940 RUSC2Q8N2Y8 1516 aa22.8■■□□□ 1.24
LINC00839-202ENST00000429940 DIEXFQ68CQ4 756 aaKnown RBP22.8■■□□□ 1.24
LINC00839-202ENST00000429940 UBTFP17480 764 aaKnown RBP22.77■■□□□ 1.24
LINC00839-202ENST00000429940 GOLGA3Q08378 1498 aa22.75■■□□□ 1.23
LINC00839-202ENST00000429940 NEUROD1Q13562 356 aa22.74■■□□□ 1.23
LINC00839-202ENST00000429940 CENPBP07199 599 aaPredicted RBP22.65■■□□□ 1.22
LINC00839-202ENST00000429940 PRDM2Q13029 1718 aa22.6■■□□□ 1.21
LINC00839-202ENST00000429940 SYNJ1O43426 1573 aa22.59■■□□□ 1.21
LINC00839-202ENST00000429940 CEP164Q9UPV0 1460 aa22.59■■□□□ 1.21
LINC00839-202ENST00000429940 KIF21BO75037 1637 aa22.58■■□□□ 1.2
LINC00839-202ENST00000429940 FANCD2Q9BXW9 1451 aa22.58■■□□□ 1.2
LINC00839-202ENST00000429940 LAMC3Q9Y6N6 1575 aa22.57■■□□□ 1.2
LINC00839-202ENST00000429940 ZNF316A6NFI3 1004 aaPredicted RBP22.56■■□□□ 1.2
LINC00839-202ENST00000429940 GTF3C3Q9Y5Q9 886 aa22.55■■□□□ 1.2
LINC00839-202ENST00000429940 CUX1P39880 1505 aa22.5■■□□□ 1.19
LINC00839-202ENST00000429940 CLIP1P30622 1438 aa22.49■■□□□ 1.19
LINC00839-202ENST00000429940 KIF21AQ7Z4S6 1674 aa22.45■■□□□ 1.18
LINC00839-202ENST00000429940 PDS5BQ9NTI5 1447 aa22.44■■□□□ 1.18
LINC00839-202ENST00000429940 HNRNPUL2Q1KMD3 747 aaKnown RBP22.44■■□□□ 1.18
LINC00839-202ENST00000429940 VPS8Q8N3P4 1428 aa22.43■■□□□ 1.18
LINC00839-202ENST00000429940 TOP2BQ02880 1626 aa22.43■■□□□ 1.18
LINC00839-202ENST00000429940 BIVM-ERCC5R4GMW8 1640 aa22.37■■□□□ 1.17
LINC00839-202ENST00000429940 RAPGEF2Q9Y4G8 1499 aa22.37■■□□□ 1.17
LINC00839-202ENST00000429940 APLP2Q06481 763 aa22.34■■□□□ 1.17
LINC00839-202ENST00000429940 URB2Q14146 1524 aaKnown RBP22.33■■□□□ 1.16
LINC00839-202ENST00000429940 TOPBP1Q92547 1522 aa22.29■■□□□ 1.16
LINC00839-202ENST00000429940 YTHDC1Q96MU7 727 aaKnown RBP22.29■■□□□ 1.16
LINC00839-202ENST00000429940 ERCC6Q03468 1493 aa22.27■■□□□ 1.16
LINC00839-202ENST00000429940 FGD5Q6ZNL6 1462 aa22.27■■□□□ 1.16
LINC00839-202ENST00000429940 MIER1Q8N108 512 aa22.26■■□□□ 1.15
LINC00839-202ENST00000429940 DNMBPQ6XZF7 1577 aa22.26■■□□□ 1.15
LINC00839-202ENST00000429940 RANGAP1P46060 587 aaPredicted RBP22.24■■□□□ 1.15
LINC00839-202ENST00000429940 RAD54L2Q9Y4B4 1467 aa22.21■■□□□ 1.15
LINC00839-202ENST00000429940 POLA1P09884 1462 aaPredicted RBP22.19■■□□□ 1.14
LINC00839-202ENST00000429940 MRC2Q9UBG0 1479 aa22.17■■□□□ 1.14
LINC00839-202ENST00000429940 ERICH3Q5RHP9 1530 aa22.15■■□□□ 1.14
LINC00839-202ENST00000429940 CUX2O14529 1486 aa22.11■■□□□ 1.13
LINC00839-202ENST00000429940 PRXQ9BXM0 1461 aa22.11■■□□□ 1.13
LINC00839-202ENST00000429940 ARAP1Q96P48 1450 aa22.1■■□□□ 1.13
LINC00839-202ENST00000429940 CLSPNQ9HAW4 1339 aa22.08■■□□□ 1.13
LINC00839-202ENST00000429940 DHX57Q6P158 1386 aaKnown RBP22.05■■□□□ 1.12
LINC00839-202ENST00000429940 THOC2Q8NI27 1593 aaKnown RBP22.05■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms