RNA–Protein interactions for RNA: ENST00000396859.5

GAPDH-204, Transcript of glyceraldehyde-3-phosphate dehydrogenase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GAPDH, Length 1,256 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Endoplasmic reticulum, Exosome, Mitochondria, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GAPDH-204ENST00000396859 NISCHQ9Y2I1 1504 aa32.61■■■□□ 2.81
GAPDH-204ENST00000396859 CCDC180Q9P1Z9 1646 aa28.93■■■□□ 2.22
GAPDH-204ENST00000396859 ABCC9O60706 1549 aa28.06■■■□□ 2.08
GAPDH-204ENST00000396859 DCAF8L2P0C7V8 631 aa27.23■■□□□ 1.95
GAPDH-204ENST00000396859 ZCCHC6Q5VYS8 1495 aaKnown RBP27.2■■□□□ 1.95
GAPDH-204ENST00000396859 NACADO15069 1562 aa27.14■■□□□ 1.93
GAPDH-204ENST00000396859 RB1CC1Q8TDY2 1594 aa27.14■■□□□ 1.93
GAPDH-204ENST00000396859 MYO15BQ96JP2 1530 aa27.02■■□□□ 1.92
GAPDH-204ENST00000396859 DCAF1Q9Y4B6 1507 aa27■■□□□ 1.91
GAPDH-204ENST00000396859 UNC13AQ9UPW8 1703 aa26.45■■□□□ 1.83
GAPDH-204ENST00000396859 SCRIBQ14160 1630 aa26.4■■□□□ 1.82
GAPDH-204ENST00000396859 PABPN1Q86U42 306 aaKnown RBP eCLIP26.25■■□□□ 1.79
GAPDH-204ENST00000396859 BICRAQ9NZM4 1560 aa26.2■■□□□ 1.79
GAPDH-204ENST00000396859 SHROOM4Q9ULL8 1493 aa26.04■■□□□ 1.76
GAPDH-204ENST00000396859 DNAJC5BQ9UF47 199 aa25.65■■□□□ 1.7
GAPDH-204ENST00000396859 EIF4G1Q04637 1599 aaKnown RBP25.54■■□□□ 1.68
GAPDH-204ENST00000396859 CC2D2AQ9P2K1 1620 aa25.38■■□□□ 1.65
GAPDH-204ENST00000396859 CECR2Q9BXF3 1484 aa25.34■■□□□ 1.65
GAPDH-204ENST00000396859 BAZ1AQ9NRL2 1556 aaPredicted RBP25.3■■□□□ 1.64
GAPDH-204ENST00000396859 SMARCA4P51532 1647 aa25.26■■□□□ 1.63
GAPDH-204ENST00000396859 MROH2BQ7Z745 1585 aa25.11■■□□□ 1.61
GAPDH-204ENST00000396859 SMARCA2P51531 1590 aa25.09■■□□□ 1.61
GAPDH-204ENST00000396859 ATAD2BQ9ULI0 1458 aa25.05■■□□□ 1.6
GAPDH-204ENST00000396859 NCAPD3P42695 1498 aa25.01■■□□□ 1.59
GAPDH-204ENST00000396859 PEG3Q9GZU2 1588 aa24.99■■□□□ 1.59
GAPDH-204ENST00000396859 HMGXB3Q12766 1538 aa24.92■■□□□ 1.58
GAPDH-204ENST00000396859 RSF1Q96T23 1441 aaPredicted RBP24.92■■□□□ 1.58
GAPDH-204ENST00000396859 BAZ1BQ9UIG0 1483 aaKnown RBP24.91■■□□□ 1.58
GAPDH-204ENST00000396859 WIZO95785 1651 aa24.88■■□□□ 1.57
GAPDH-204ENST00000396859 TOP2AP11388 1531 aaKnown RBP24.65■■□□□ 1.54
GAPDH-204ENST00000396859 SUPT5HO00267 1087 aaKnown RBP24.53■■□□□ 1.52
GAPDH-204ENST00000396859 LAMC3Q9Y6N6 1575 aa24.35■■□□□ 1.49
GAPDH-204ENST00000396859 CCDC88BA6NC98 1476 aa24.33■■□□□ 1.49
GAPDH-204ENST00000396859 NESP48681 1621 aa24.32■■□□□ 1.48
GAPDH-204ENST00000396859 CADPSQ9ULU8 1353 aa24.3■■□□□ 1.48
GAPDH-204ENST00000396859 ERCC6Q03468 1493 aa24.23■■□□□ 1.47
GAPDH-204ENST00000396859 CFTRP13569 1480 aa24.19■■□□□ 1.46
GAPDH-204ENST00000396859 PDS5BQ9NTI5 1447 aa24.19■■□□□ 1.46
GAPDH-204ENST00000396859 PRDM2Q13029 1718 aa24.08■■□□□ 1.45
GAPDH-204ENST00000396859 KIF21AQ7Z4S6 1674 aa24.07■■□□□ 1.44
GAPDH-204ENST00000396859 FANCD2Q9BXW9 1451 aa24.04■■□□□ 1.44
GAPDH-204ENST00000396859 CEP164Q9UPV0 1460 aa24.01■■□□□ 1.43
GAPDH-204ENST00000396859 MRC2Q9UBG0 1479 aa23.91■■□□□ 1.42
GAPDH-204ENST00000396859 THOC2Q8NI27 1593 aaKnown RBP23.91■■□□□ 1.42
GAPDH-204ENST00000396859 CUX2O14529 1486 aa23.85■■□□□ 1.41
GAPDH-204ENST00000396859 WDR62O43379 1518 aa23.79■■□□□ 1.4
GAPDH-204ENST00000396859 URB2Q14146 1524 aaKnown RBP23.74■■□□□ 1.39
GAPDH-204ENST00000396859 ABCC8Q09428 1581 aa23.74■■□□□ 1.39
GAPDH-204ENST00000396859 DNMBPQ6XZF7 1577 aa23.68■■□□□ 1.38
GAPDH-204ENST00000396859 TOPBP1Q92547 1522 aa23.67■■□□□ 1.38
GAPDH-204ENST00000396859 CUX1P39880 1505 aa23.55■■□□□ 1.36
GAPDH-204ENST00000396859 WRNQ14191 1432 aaPredicted RBP eCLIP23.53■■□□□ 1.36
GAPDH-204ENST00000396859 DNAJC5Q9H3Z4 198 aa23.49■■□□□ 1.35
GAPDH-204ENST00000396859 IFT140Q96RY7 1462 aa23.49■■□□□ 1.35
GAPDH-204ENST00000396859 POLA1P09884 1462 aaPredicted RBP23.48■■□□□ 1.35
GAPDH-204ENST00000396859 FGD5Q6ZNL6 1462 aa23.47■■□□□ 1.35
GAPDH-204ENST00000396859 TOP2BQ02880 1626 aa23.44■■□□□ 1.34
GAPDH-204ENST00000396859 BIVM-ERCC5R4GMW8 1640 aa23.44■■□□□ 1.34
GAPDH-204ENST00000396859 SYNJ1O43426 1573 aa23.42■■□□□ 1.34
GAPDH-204ENST00000396859 SOGA1O94964 1423 aa23.42■■□□□ 1.34
GAPDH-204ENST00000396859 TARBP1Q13395 1621 aaKnown RBP23.37■■□□□ 1.33
GAPDH-204ENST00000396859 RAD54L2Q9Y4B4 1467 aa23.36■■□□□ 1.33
GAPDH-204ENST00000396859 ZNF608Q9ULD9 1512 aaPredicted RBP23.3■■□□□ 1.32
GAPDH-204ENST00000396859 EIF4G3O43432 1585 aaKnown RBP23.27■■□□□ 1.32
GAPDH-204ENST00000396859 WDR97A6NE52 1622 aa23.26■■□□□ 1.31
GAPDH-204ENST00000396859 ABCA10Q8WWZ4 1543 aa23.24■■□□□ 1.31
GAPDH-204ENST00000396859 TDRD9Q8NDG6 1382 aaKnown RBP23.23■■□□□ 1.31
GAPDH-204ENST00000396859 AQRO60306 1485 aaKnown RBP eCLIP23.23■■□□□ 1.312e-13■■■■■ 32.6
GAPDH-204ENST00000396859 TRIM41Q8WV44 630 aa23.18■■□□□ 1.3
GAPDH-204ENST00000396859 GAPVD1Q14C86 1478 aa23.15■■□□□ 1.3
GAPDH-204ENST00000396859 GRIN2BQ13224 1484 aa23.12■■□□□ 1.29
GAPDH-204ENST00000396859 ABCA5Q8WWZ7 1642 aa23.12■■□□□ 1.29
GAPDH-204ENST00000396859 PBRM1Q86U86 1689 aa23.09■■□□□ 1.29
GAPDH-204ENST00000396859 KIF27Q86VH2 1401 aa23.05■■□□□ 1.28
GAPDH-204ENST00000396859 SNAPC4Q5SXM2 1469 aa23.04■■□□□ 1.28
GAPDH-204ENST00000396859 MAGI1Q96QZ7 1491 aaPredicted RBP23.03■■□□□ 1.28
GAPDH-204ENST00000396859 ERICH3Q5RHP9 1530 aa22.99■■□□□ 1.27
GAPDH-204ENST00000396859 FBLN2P98095 1184 aa22.98■■□□□ 1.27
GAPDH-204ENST00000396859 CHIC1Q5VXU3 224 aa22.98■■□□□ 1.27
GAPDH-204ENST00000396859 CHMP7Q8WUX9 453 aaPredicted RBP22.94■■□□□ 1.26
GAPDH-204ENST00000396859 SYNJ2O15056 1496 aa22.93■■□□□ 1.26
GAPDH-204ENST00000396859 CHD1O14646 1710 aa22.93■■□□□ 1.26
GAPDH-204ENST00000396859 OSCARQ8IYS5 282 aa22.92■■□□□ 1.26
GAPDH-204ENST00000396859 ADAMTS12P58397 1594 aa22.9■■□□□ 1.26
GAPDH-204ENST00000396859 FHAD1B1AJZ9 1412 aa22.89■■□□□ 1.25
GAPDH-204ENST00000396859 CUL7Q14999 1698 aa22.86■■□□□ 1.25
GAPDH-204ENST00000396859 IGF1RP08069 1367 aa22.86■■□□□ 1.25
GAPDH-204ENST00000396859 RUSC2Q8N2Y8 1516 aa22.82■■□□□ 1.24
GAPDH-204ENST00000396859 GRIN2AQ12879 1464 aa22.8■■□□□ 1.24
GAPDH-204ENST00000396859 EEA1Q15075 1411 aa22.78■■□□□ 1.24
GAPDH-204ENST00000396859 CARMIL1Q5VZK9 1371 aa22.77■■□□□ 1.24
GAPDH-204ENST00000396859 CSRNP3Q8WYN3 585 aa22.69■■□□□ 1.22
GAPDH-204ENST00000396859 RAPGEF2Q9Y4G8 1499 aa22.67■■□□□ 1.22
GAPDH-204ENST00000396859 NUP160Q12769 1436 aa22.67■■□□□ 1.22
GAPDH-204ENST00000396859 FAM9AQ8IZU1 332 aaPredicted RBP22.67■■□□□ 1.22
GAPDH-204ENST00000396859 CEP170Q5SW79 1584 aa22.66■■□□□ 1.22
GAPDH-204ENST00000396859 CLASP1Q7Z460 1538 aa22.66■■□□□ 1.22
GAPDH-204ENST00000396859 PRXQ9BXM0 1461 aa22.6■■□□□ 1.21
GAPDH-204ENST00000396859 KIAA0586Q9BVV6 1533 aa22.54■■□□□ 1.2
GAPDH-204ENST00000396859 ARHGEF11O15085 1522 aa22.51■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms