RNA–Protein interactions for RNA: ENST00000542680.1

CACNA1C-IT3-201, CACNA1C intronic transcript 3, humanhuman

TSL 3 BASIC

Gene CACNA1C-IT3, Length 622 nt, Biotype sense intronic.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1C-IT3-201ENST00000542680 NISCHQ9Y2I1 1504 aa28.69■■■□□ 2.18
CACNA1C-IT3-201ENST00000542680 ABCC9O60706 1549 aa27.24■■□□□ 1.95
CACNA1C-IT3-201ENST00000542680 DNAJC5BQ9UF47 199 aa26.62■■□□□ 1.85
CACNA1C-IT3-201ENST00000542680 CCDC180Q9P1Z9 1646 aa26.2■■□□□ 1.78
CACNA1C-IT3-201ENST00000542680 RB1CC1Q8TDY2 1594 aa25.44■■□□□ 1.66
CACNA1C-IT3-201ENST00000542680 DNAJC5Q9H3Z4 198 aa25.3■■□□□ 1.64
CACNA1C-IT3-201ENST00000542680 PABPN1Q86U42 306 aaKnown RBP eCLIP25.1■■□□□ 1.61
CACNA1C-IT3-201ENST00000542680 UNC13AQ9UPW8 1703 aa25■■□□□ 1.59
CACNA1C-IT3-201ENST00000542680 NACADO15069 1562 aa24.98■■□□□ 1.59
CACNA1C-IT3-201ENST00000542680 BICRAQ9NZM4 1560 aa24.82■■□□□ 1.56
CACNA1C-IT3-201ENST00000542680 CECR2Q9BXF3 1484 aa24.67■■□□□ 1.54
CACNA1C-IT3-201ENST00000542680 CC2D2AQ9P2K1 1620 aa24.61■■□□□ 1.53
CACNA1C-IT3-201ENST00000542680 DCAF8L2P0C7V8 631 aa24.37■■□□□ 1.49
CACNA1C-IT3-201ENST00000542680 SHROOM4Q9ULL8 1493 aa24.33■■□□□ 1.49
CACNA1C-IT3-201ENST00000542680 MYO15BQ96JP2 1530 aa24.27■■□□□ 1.48
CACNA1C-IT3-201ENST00000542680 EIF4G1Q04637 1599 aaKnown RBP24.26■■□□□ 1.47
CACNA1C-IT3-201ENST00000542680 ZCCHC6Q5VYS8 1495 aaKnown RBP24.07■■□□□ 1.44
CACNA1C-IT3-201ENST00000542680 CUX2O14529 1486 aa24■■□□□ 1.43
CACNA1C-IT3-201ENST00000542680 DCAF1Q9Y4B6 1507 aa23.88■■□□□ 1.41
CACNA1C-IT3-201ENST00000542680 SCRIBQ14160 1630 aa23.72■■□□□ 1.39
CACNA1C-IT3-201ENST00000542680 TRIM41Q8WV44 630 aa23.61■■□□□ 1.37
CACNA1C-IT3-201ENST00000542680 ERCC6Q03468 1493 aa23.57■■□□□ 1.36
CACNA1C-IT3-201ENST00000542680 THOC2Q8NI27 1593 aaKnown RBP23.18■■□□□ 1.3
CACNA1C-IT3-201ENST00000542680 NESP48681 1621 aa23.08■■□□□ 1.29
CACNA1C-IT3-201ENST00000542680 NCAPD3P42695 1498 aa23.06■■□□□ 1.28
CACNA1C-IT3-201ENST00000542680 SMARCA2P51531 1590 aa22.85■■□□□ 1.25
CACNA1C-IT3-201ENST00000542680 KIF21AQ7Z4S6 1674 aa22.83■■□□□ 1.24
CACNA1C-IT3-201ENST00000542680 HMGXB3Q12766 1538 aa22.82■■□□□ 1.24
CACNA1C-IT3-201ENST00000542680 ATAD2BQ9ULI0 1458 aa22.82■■□□□ 1.24
CACNA1C-IT3-201ENST00000542680 BAZ1AQ9NRL2 1556 aaPredicted RBP22.78■■□□□ 1.24
CACNA1C-IT3-201ENST00000542680 LAMC3Q9Y6N6 1575 aa22.76■■□□□ 1.23
CACNA1C-IT3-201ENST00000542680 OSCARQ8IYS5 282 aa22.6■■□□□ 1.21
CACNA1C-IT3-201ENST00000542680 RIMBP3CA6NJZ7 1639 aa22.59■■□□□ 1.21
CACNA1C-IT3-201ENST00000542680 RIMBP3BA6NNM3 1639 aa22.59■■□□□ 1.21
CACNA1C-IT3-201ENST00000542680 RIMBP3Q9UFD9 1639 aa22.59■■□□□ 1.21
CACNA1C-IT3-201ENST00000542680 PDS5BQ9NTI5 1447 aa22.58■■□□□ 1.21
CACNA1C-IT3-201ENST00000542680 WDR62O43379 1518 aa22.55■■□□□ 1.2
CACNA1C-IT3-201ENST00000542680 SMARCA4P51532 1647 aa22.53■■□□□ 1.2
CACNA1C-IT3-201ENST00000542680 MRC2Q9UBG0 1479 aa22.52■■□□□ 1.2
CACNA1C-IT3-201ENST00000542680 BAZ1BQ9UIG0 1483 aaKnown RBP22.51■■□□□ 1.19
CACNA1C-IT3-201ENST00000542680 AEBP2Q6ZN18 517 aaPredicted RBP22.47■■□□□ 1.19
CACNA1C-IT3-201ENST00000542680 ARHGEF11O15085 1522 aa22.36■■□□□ 1.17
CACNA1C-IT3-201ENST00000542680 PEG3Q9GZU2 1588 aa22.35■■□□□ 1.17
CACNA1C-IT3-201ENST00000542680 CADPSQ9ULU8 1353 aa22.25■■□□□ 1.15
CACNA1C-IT3-201ENST00000542680 TRHP20396 242 aaPredicted RBP22.24■■□□□ 1.15
CACNA1C-IT3-201ENST00000542680 CEP164Q9UPV0 1460 aa22.17■■□□□ 1.14
CACNA1C-IT3-201ENST00000542680 CYB5RLQ6IPT4 315 aa22.14■■□□□ 1.13
CACNA1C-IT3-201ENST00000542680 MROH2BQ7Z745 1585 aa22.07■■□□□ 1.12
CACNA1C-IT3-201ENST00000542680 ARAP1Q96P48 1450 aa22.06■■□□□ 1.12
CACNA1C-IT3-201ENST00000542680 RSF1Q96T23 1441 aaPredicted RBP22.06■■□□□ 1.12
CACNA1C-IT3-201ENST00000542680 FANCD2Q9BXW9 1451 aa22.03■■□□□ 1.12
CACNA1C-IT3-201ENST00000542680 URB2Q14146 1524 aaKnown RBP21.97■■□□□ 1.11
CACNA1C-IT3-201ENST00000542680 ZNF608Q9ULD9 1512 aaPredicted RBP21.88■■□□□ 1.09
CACNA1C-IT3-201ENST00000542680 WIZO95785 1651 aa21.87■■□□□ 1.09
CACNA1C-IT3-201ENST00000542680 CHD1O14646 1710 aa21.83■■□□□ 1.09
CACNA1C-IT3-201ENST00000542680 SUPT5HO00267 1087 aaKnown RBP21.83■■□□□ 1.09
CACNA1C-IT3-201ENST00000542680 ILDR1Q86SU0 546 aaPredicted RBP21.81■■□□□ 1.08
CACNA1C-IT3-201ENST00000542680 CFTRP13569 1480 aa21.8■■□□□ 1.08
CACNA1C-IT3-201ENST00000542680 IFT140Q96RY7 1462 aa21.77■■□□□ 1.08
CACNA1C-IT3-201ENST00000542680 TOP2AP11388 1531 aaKnown RBP21.75■■□□□ 1.07
CACNA1C-IT3-201ENST00000542680 EIF4G3O43432 1585 aaKnown RBP21.74■■□□□ 1.07
CACNA1C-IT3-201ENST00000542680 PRDM2Q13029 1718 aa21.6■■□□□ 1.05
CACNA1C-IT3-201ENST00000542680 CLASP1Q7Z460 1538 aa21.54■■□□□ 1.04
CACNA1C-IT3-201ENST00000542680 TOPBP1Q92547 1522 aa21.5■■□□□ 1.03
CACNA1C-IT3-201ENST00000542680 AQRO60306 1485 aaKnown RBP eCLIP21.49■■□□□ 1.03
CACNA1C-IT3-201ENST00000542680 FBLN2P98095 1184 aa21.47■■□□□ 1.03
CACNA1C-IT3-201ENST00000542680 TARBP1Q13395 1621 aaKnown RBP21.47■■□□□ 1.03
CACNA1C-IT3-201ENST00000542680 CCDC88BA6NC98 1476 aa21.41■■□□□ 1.02
CACNA1C-IT3-201ENST00000542680 SYNJ1O43426 1573 aa21.36■■□□□ 1.01
CACNA1C-IT3-201ENST00000542680 ABCC8Q09428 1581 aa21.35■■□□□ 1.01
CACNA1C-IT3-201ENST00000542680 DNMBPQ6XZF7 1577 aa21.34■■□□□ 1.01
CACNA1C-IT3-201ENST00000542680 GAPVD1Q14C86 1478 aa21.32■■□□□ 1
CACNA1C-IT3-201ENST00000542680 KIF13AQ9H1H9 1805 aa21.3■■□□□ 1
CACNA1C-IT3-201ENST00000542680 SNAPC4Q5SXM2 1469 aa21.26■□□□□ 0.99
CACNA1C-IT3-201ENST00000542680 KDM4FA0A1W2PPD8 638 aa21.25■□□□□ 0.99
CACNA1C-IT3-201ENST00000542680 POLA1P09884 1462 aaPredicted RBP21.2■□□□□ 0.98
CACNA1C-IT3-201ENST00000542680 MAGI1Q96QZ7 1491 aaPredicted RBP21.16■□□□□ 0.98
CACNA1C-IT3-201ENST00000542680 WDR97A6NE52 1622 aa21.15■□□□□ 0.98
CACNA1C-IT3-201ENST00000542680 CHMP7Q8WUX9 453 aaPredicted RBP21.14■□□□□ 0.97
CACNA1C-IT3-201ENST00000542680 TDRD9Q8NDG6 1382 aaKnown RBP21.13■□□□□ 0.97
CACNA1C-IT3-201ENST00000542680 RAD54L2Q9Y4B4 1467 aa21.12■□□□□ 0.97
CACNA1C-IT3-201ENST00000542680 SYNJ2O15056 1496 aa21.1■□□□□ 0.97
CACNA1C-IT3-201ENST00000542680 ERCC6L2Q5T890 1561 aa21.1■□□□□ 0.97
CACNA1C-IT3-201ENST00000542680 SOGA1O94964 1423 aa21.02■□□□□ 0.96
CACNA1C-IT3-201ENST00000542680 GRIN2BQ13224 1484 aa21.01■□□□□ 0.95
CACNA1C-IT3-201ENST00000542680 KDM6BO15054 1643 aa20.97■□□□□ 0.95
CACNA1C-IT3-201ENST00000542680 HECW2Q9P2P5 1572 aa20.97■□□□□ 0.95
CACNA1C-IT3-201ENST00000542680 PBRM1Q86U86 1689 aa20.95■□□□□ 0.94
CACNA1C-IT3-201ENST00000542680 CEP170Q5SW79 1584 aa20.93■□□□□ 0.94
CACNA1C-IT3-201ENST00000542680 ABCC10Q5T3U5 1492 aa20.91■□□□□ 0.94
CACNA1C-IT3-201ENST00000542680 FGD5Q6ZNL6 1462 aa20.89■□□□□ 0.94
CACNA1C-IT3-201ENST00000542680 DIP2BQ9P265 1576 aa20.88■□□□□ 0.93
CACNA1C-IT3-201ENST00000542680 SHROOM2Q13796 1616 aa20.87■□□□□ 0.93
CACNA1C-IT3-201ENST00000542680 FBXO41Q8TF61 875 aa20.86■□□□□ 0.93
CACNA1C-IT3-201ENST00000542680 FAM69CQ0P6D2 419 aa20.85■□□□□ 0.93
CACNA1C-IT3-201ENST00000542680 ADGRL1O94910 1474 aa20.83■□□□□ 0.93
CACNA1C-IT3-201ENST00000542680 WRNQ14191 1432 aaPredicted RBP eCLIP20.8■□□□□ 0.92
CACNA1C-IT3-201ENST00000542680 MAPKBP1O60336 1514 aa20.8■□□□□ 0.92
CACNA1C-IT3-201ENST00000542680 CHIC1Q5VXU3 224 aa20.8■□□□□ 0.92
CACNA1C-IT3-201ENST00000542680 TSPOAP1O95153 1857 aa20.78■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms