RNA–Protein interactions for RNA: ENST00000537529.6

MKS1-204, Transcript of Meckel syndrome, type 1, humanhuman

TSL 1 (best) BASIC

Gene MKS1, Length 2,083 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1-204ENST00000537529 NISCHQ9Y2I1 1504 aa33.95■■■■□ 3.03
MKS1-204ENST00000537529 CCDC180Q9P1Z9 1646 aa29.29■■■□□ 2.28
MKS1-204ENST00000537529 ZCCHC6Q5VYS8 1495 aaKnown RBP28.66■■■□□ 2.18
MKS1-204ENST00000537529 SHROOM4Q9ULL8 1493 aa28.22■■■□□ 2.11
MKS1-204ENST00000537529 DCAF1Q9Y4B6 1507 aa28.04■■■□□ 2.08
MKS1-204ENST00000537529 DCAF8L2P0C7V8 631 aa27.91■■■□□ 2.06
MKS1-204ENST00000537529 MYO15BQ96JP2 1530 aa27.47■■□□□ 1.99
MKS1-204ENST00000537529 SUPT5HO00267 1087 aaKnown RBP27.45■■□□□ 1.98
MKS1-204ENST00000537529 ABCC9O60706 1549 aa27.22■■□□□ 1.95
MKS1-204ENST00000537529 NACADO15069 1562 aa27.15■■□□□ 1.94
MKS1-204ENST00000537529 SCRIBQ14160 1630 aa27.1■■□□□ 1.93
MKS1-204ENST00000537529 RB1CC1Q8TDY2 1594 aa26.79■■□□□ 1.88
MKS1-204ENST00000537529 RSF1Q96T23 1441 aaPredicted RBP26.59■■□□□ 1.85
MKS1-204ENST00000537529 CHIC1Q5VXU3 224 aa26.56■■□□□ 1.84
MKS1-204ENST00000537529 CECR2Q9BXF3 1484 aa26.36■■□□□ 1.81
MKS1-204ENST00000537529 MROH2BQ7Z745 1585 aa26.27■■□□□ 1.8
MKS1-204ENST00000537529 UNC13AQ9UPW8 1703 aa26.23■■□□□ 1.79
MKS1-204ENST00000537529 BAZ1AQ9NRL2 1556 aaPredicted RBP26.17■■□□□ 1.78
MKS1-204ENST00000537529 WIZO95785 1651 aa26.09■■□□□ 1.77
MKS1-204ENST00000537529 SMARCA4P51532 1647 aa25.98■■□□□ 1.75
MKS1-204ENST00000537529 BICRAQ9NZM4 1560 aa25.96■■□□□ 1.75
MKS1-204ENST00000537529 TOP2AP11388 1531 aaKnown RBP25.84■■□□□ 1.73
MKS1-204ENST00000537529 PABPN1Q86U42 306 aaKnown RBP eCLIP25.8■■□□□ 1.72
MKS1-204ENST00000537529 TRIM41Q8WV44 630 aa25.74■■□□□ 1.71
MKS1-204ENST00000537529 EIF4G1Q04637 1599 aaKnown RBP25.65■■□□□ 1.7
MKS1-204ENST00000537529 SMARCA2P51531 1590 aa25.61■■□□□ 1.69
MKS1-204ENST00000537529 PEG3Q9GZU2 1588 aa25.6■■□□□ 1.69
MKS1-204ENST00000537529 CCDC88BA6NC98 1476 aa25.59■■□□□ 1.69
MKS1-204ENST00000537529 LOC105371045A0A1W2PR82 267 aa25.59■■□□□ 1.69
MKS1-204ENST00000537529 ATAD2BQ9ULI0 1458 aa25.4■■□□□ 1.66
MKS1-204ENST00000537529 FAM9AQ8IZU1 332 aaPredicted RBP25.32■■□□□ 1.64
MKS1-204ENST00000537529 BAZ1BQ9UIG0 1483 aaKnown RBP25.31■■□□□ 1.64
MKS1-204ENST00000537529 ABCC8Q09428 1581 aa25.27■■□□□ 1.64
MKS1-204ENST00000537529 PCGF6Q9BYE7 350 aa25.09■■□□□ 1.61
MKS1-204ENST00000537529 HMGXB3Q12766 1538 aa25.09■■□□□ 1.61
MKS1-204ENST00000537529 NCAPD3P42695 1498 aa25.05■■□□□ 1.6
MKS1-204ENST00000537529 WRNQ14191 1432 aaPredicted RBP eCLIP25.03■■□□□ 1.6
MKS1-204ENST00000537529 EEA1Q15075 1411 aa24.99■■□□□ 1.59
MKS1-204ENST00000537529 EHMT2Q96KQ7 1210 aa24.97■■□□□ 1.59
MKS1-204ENST00000537529 TRIM26Q12899 539 aaPredicted RBP24.92■■□□□ 1.58
MKS1-204ENST00000537529 SOGA1O94964 1423 aa24.92■■□□□ 1.58
MKS1-204ENST00000537529 SYNJ1O43426 1573 aa24.9■■□□□ 1.58
MKS1-204ENST00000537529 HRCP23327 699 aa24.88■■□□□ 1.57
MKS1-204ENST00000537529 CSRNP3Q8WYN3 585 aa24.79■■□□□ 1.56
MKS1-204ENST00000537529 RUSC2Q8N2Y8 1516 aa24.78■■□□□ 1.56
MKS1-204ENST00000537529 TOP2BQ02880 1626 aa24.73■■□□□ 1.55
MKS1-204ENST00000537529 TNIKQ9UKE5 1360 aa24.72■■□□□ 1.55
MKS1-204ENST00000537529 GOLGA3Q08378 1498 aa24.69■■□□□ 1.54
MKS1-204ENST00000537529 BIVM-ERCC5R4GMW8 1640 aa24.69■■□□□ 1.54
MKS1-204ENST00000537529 CFTRP13569 1480 aa24.68■■□□□ 1.54
MKS1-204ENST00000537529 CEP162Q5TB80 1403 aa24.66■■□□□ 1.54
MKS1-204ENST00000537529 KIF21BO75037 1637 aa24.63■■□□□ 1.53
MKS1-204ENST00000537529 CEP164Q9UPV0 1460 aa24.62■■□□□ 1.53
MKS1-204ENST00000537529 CC2D2AQ9P2K1 1620 aa24.62■■□□□ 1.53
MKS1-204ENST00000537529 UBTFP17480 764 aaKnown RBP24.57■■□□□ 1.52
MKS1-204ENST00000537529 PRDM2Q13029 1718 aa24.57■■□□□ 1.52
MKS1-204ENST00000537529 CUX1P39880 1505 aa24.53■■□□□ 1.52
MKS1-204ENST00000537529 CADPSQ9ULU8 1353 aa24.48■■□□□ 1.51
MKS1-204ENST00000537529 RAPGEF2Q9Y4G8 1499 aa24.39■■□□□ 1.49
MKS1-204ENST00000537529 PPARGC1BQ86YN6 1023 aaKnown RBP24.37■■□□□ 1.49
MKS1-204ENST00000537529 ERICH3Q5RHP9 1530 aa24.35■■□□□ 1.49
MKS1-204ENST00000537529 KIF27Q86VH2 1401 aa24.34■■□□□ 1.49
MKS1-204ENST00000537529 CLIP1P30622 1438 aa24.33■■□□□ 1.49
MKS1-204ENST00000537529 PRXQ9BXM0 1461 aa24.32■■□□□ 1.48
MKS1-204ENST00000537529 ZEB1P37275 1124 aaPredicted RBP24.26■■□□□ 1.47
MKS1-204ENST00000537529 FANCD2Q9BXW9 1451 aa24.23■■□□□ 1.47
MKS1-204ENST00000537529 VPS8Q8N3P4 1428 aa24.19■■□□□ 1.46
MKS1-204ENST00000537529 FGD5Q6ZNL6 1462 aa24.18■■□□□ 1.46
MKS1-204ENST00000537529 CUX2O14529 1486 aa24.15■■□□□ 1.46
MKS1-204ENST00000537529 DNMBPQ6XZF7 1577 aa24.11■■□□□ 1.45
MKS1-204ENST00000537529 LAMC3Q9Y6N6 1575 aa24.1■■□□□ 1.45
MKS1-204ENST00000537529 TTBK1Q5TCY1 1321 aaPredicted RBP24.08■■□□□ 1.45
MKS1-204ENST00000537529 NESP48681 1621 aa24.08■■□□□ 1.45
MKS1-204ENST00000537529 IGF1RP08069 1367 aa24.04■■□□□ 1.44
MKS1-204ENST00000537529 TOPBP1Q92547 1522 aa24.03■■□□□ 1.44
MKS1-204ENST00000537529 RANGAP1P46060 587 aaPredicted RBP24.01■■□□□ 1.43
MKS1-204ENST00000537529 APLP2Q06481 763 aa24■■□□□ 1.43
MKS1-204ENST00000537529 ARAP1Q96P48 1450 aa24■■□□□ 1.43
MKS1-204ENST00000537529 ABCA10Q8WWZ4 1543 aa23.96■■□□□ 1.43
MKS1-204ENST00000537529 POLA1P09884 1462 aaPredicted RBP23.96■■□□□ 1.43
MKS1-204ENST00000537529 CARMIL1Q5VZK9 1371 aa23.95■■□□□ 1.42
MKS1-204ENST00000537529 PDS5BQ9NTI5 1447 aa23.92■■□□□ 1.42
MKS1-204ENST00000537529 RAD54L2Q9Y4B4 1467 aa23.9■■□□□ 1.42
MKS1-204ENST00000537529 URB2Q14146 1524 aaKnown RBP23.89■■□□□ 1.41
MKS1-204ENST00000537529 ARHGAP35Q9NRY4 1499 aa23.87■■□□□ 1.41
MKS1-204ENST00000537529 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.87■■□□□ 1.41
MKS1-204ENST00000537529 CCER1Q8TC90 406 aaPredicted RBP23.87■■□□□ 1.41
MKS1-204ENST00000537529 WDR97A6NE52 1622 aa23.81■■□□□ 1.4
MKS1-204ENST00000537529 CUL7Q14999 1698 aa23.81■■□□□ 1.4
MKS1-204ENST00000537529 DNAJC5BQ9UF47 199 aa23.8■■□□□ 1.4
MKS1-204ENST00000537529 KIF21AQ7Z4S6 1674 aa23.77■■□□□ 1.4
MKS1-204ENST00000537529 ABCA5Q8WWZ7 1642 aa23.71■■□□□ 1.39
MKS1-204ENST00000537529 HNRNPUL2Q1KMD3 747 aaKnown RBP23.64■■□□□ 1.38
MKS1-204ENST00000537529 GAPVD1Q14C86 1478 aa23.64■■□□□ 1.38
MKS1-204ENST00000537529 KANK4Q5T7N3 995 aaPredicted RBP23.64■■□□□ 1.37
MKS1-204ENST00000537529 MAP3K1Q13233 1512 aa23.63■■□□□ 1.37
MKS1-204ENST00000537529 CTTNBP2Q8WZ74 1663 aa23.62■■□□□ 1.37
MKS1-204ENST00000537529 EFCAB5A4FU69 1503 aa23.62■■□□□ 1.37
MKS1-204ENST00000537529 TDRD9Q8NDG6 1382 aaKnown RBP23.62■■□□□ 1.37
MKS1-204ENST00000537529 FHAD1B1AJZ9 1412 aa23.61■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms