Protein–RNA interactions for Protein: A0A0B4J268

TRAV4, T-cell receptor alpha variable 4 (Fragment), humanhuman

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV4A0A0B4J268 TK2-216ENST00000564917 1156 ntTSL 3 BASIC16.21■□□□□ 0.19
TRAV4A0A0B4J268 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRAV4A0A0B4J268 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
TRAV4A0A0B4J268 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TRAV4A0A0B4J268 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRAV4A0A0B4J268 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRAV4A0A0B4J268 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC16.2■□□□□ 0.18
TRAV4A0A0B4J268 AL031848.2-201ENST00000607670 837 ntBASIC16.2■□□□□ 0.18
TRAV4A0A0B4J268 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRAV4A0A0B4J268 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRAV4A0A0B4J268 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
TRAV4A0A0B4J268 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV4A0A0B4J268 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC16.19■□□□□ 0.18
TRAV4A0A0B4J268 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC16.19■□□□□ 0.18
TRAV4A0A0B4J268 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV4A0A0B4J268 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
TRAV4A0A0B4J268 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV4A0A0B4J268 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
TRAV4A0A0B4J268 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC16.19■□□□□ 0.18
TRAV4A0A0B4J268 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV4A0A0B4J268 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV4A0A0B4J268 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV4A0A0B4J268 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC16.19■□□□□ 0.18
TRAV4A0A0B4J268 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV4A0A0B4J268 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV4A0A0B4J268 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV4A0A0B4J268 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV4A0A0B4J268 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV4A0A0B4J268 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
TRAV4A0A0B4J268 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV4A0A0B4J268 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV4A0A0B4J268 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV4A0A0B4J268 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV4A0A0B4J268 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC16.18■□□□□ 0.18
TRAV4A0A0B4J268 ANOS2P-203ENST00000472227 1816 ntBASIC16.18■□□□□ 0.18
TRAV4A0A0B4J268 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV4A0A0B4J268 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
TRAV4A0A0B4J268 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV4A0A0B4J268 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC16.18■□□□□ 0.18
TRAV4A0A0B4J268 NFE2L3P1-201ENST00000588207 1959 ntBASIC16.18■□□□□ 0.18
TRAV4A0A0B4J268 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV4A0A0B4J268 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC16.18■□□□□ 0.18
TRAV4A0A0B4J268 CASK-201ENST00000378154 2494 ntTSL 5 BASIC16.18■□□□□ 0.18
TRAV4A0A0B4J268 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
TRAV4A0A0B4J268 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV4A0A0B4J268 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV4A0A0B4J268 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC16.17■□□□□ 0.18
TRAV4A0A0B4J268 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC16.17■□□□□ 0.18
TRAV4A0A0B4J268 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV4A0A0B4J268 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV4A0A0B4J268 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC16.17■□□□□ 0.18
TRAV4A0A0B4J268 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC16.17■□□□□ 0.18
TRAV4A0A0B4J268 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC16.17■□□□□ 0.18
TRAV4A0A0B4J268 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC16.17■□□□□ 0.18
TRAV4A0A0B4J268 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC16.17■□□□□ 0.18
TRAV4A0A0B4J268 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV4A0A0B4J268 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV4A0A0B4J268 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC16.17■□□□□ 0.18
TRAV4A0A0B4J268 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC16.17■□□□□ 0.18
TRAV4A0A0B4J268 AL024507.2-201ENST00000606070 2574 ntBASIC16.17■□□□□ 0.18
TRAV4A0A0B4J268 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV4A0A0B4J268 AC092068.2-201ENST00000590491 1708 ntBASIC16.16■□□□□ 0.18
TRAV4A0A0B4J268 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV4A0A0B4J268 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV4A0A0B4J268 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV4A0A0B4J268 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV4A0A0B4J268 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC16.16■□□□□ 0.18
TRAV4A0A0B4J268 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV4A0A0B4J268 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV4A0A0B4J268 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV4A0A0B4J268 AC137630.3-201ENST00000607245 391 ntBASIC16.16■□□□□ 0.18
TRAV4A0A0B4J268 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC16.16■□□□□ 0.18
TRAV4A0A0B4J268 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV4A0A0B4J268 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV4A0A0B4J268 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV4A0A0B4J268 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV4A0A0B4J268 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV4A0A0B4J268 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC16.16■□□□□ 0.18
TRAV4A0A0B4J268 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV4A0A0B4J268 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRAV4A0A0B4J268 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC16.15■□□□□ 0.18
TRAV4A0A0B4J268 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRAV4A0A0B4J268 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
TRAV4A0A0B4J268 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRAV4A0A0B4J268 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
TRAV4A0A0B4J268 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRAV4A0A0B4J268 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC16.15■□□□□ 0.18
TRAV4A0A0B4J268 TK2-202ENST00000417693 1046 ntTSL 2 BASIC16.15■□□□□ 0.18
TRAV4A0A0B4J268 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TRAV4A0A0B4J268 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRAV4A0A0B4J268 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TRAV4A0A0B4J268 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC16.15■□□□□ 0.18
TRAV4A0A0B4J268 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
TRAV4A0A0B4J268 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRAV4A0A0B4J268 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRAV4A0A0B4J268 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRAV4A0A0B4J268 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
TRAV4A0A0B4J268 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
TRAV4A0A0B4J268 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
TRAV4A0A0B4J268 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 15.4 ms