RNA–Protein interactions for RNA: ENST00000518699.3

NKX6-3-201, Transcript of NK6 homeobox 3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene NKX6-3, Length 1,352 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX6-3-201ENST00000518699 NISCHQ9Y2I1 1504 aa54.87■■■■■ 6.37
NKX6-3-201ENST00000518699 CCDC180Q9P1Z9 1646 aa48.67■■■■■ 5.38
NKX6-3-201ENST00000518699 ABCC9O60706 1549 aa46.83■■■■■ 5.09
NKX6-3-201ENST00000518699 ZCCHC6Q5VYS8 1495 aaKnown RBP45.88■■■■■ 4.94
NKX6-3-201ENST00000518699 NACADO15069 1562 aa45.53■■■■■ 4.88
NKX6-3-201ENST00000518699 DCAF1Q9Y4B6 1507 aa45.51■■■■■ 4.88
NKX6-3-201ENST00000518699 MYO15BQ96JP2 1530 aa45.49■■■■■ 4.87
NKX6-3-201ENST00000518699 RB1CC1Q8TDY2 1594 aa45.42■■■■■ 4.86
NKX6-3-201ENST00000518699 DCAF8L2P0C7V8 631 aa45.3■■■■■ 4.84
NKX6-3-201ENST00000518699 UNC13AQ9UPW8 1703 aa44.49■■■■■ 4.71
NKX6-3-201ENST00000518699 SCRIBQ14160 1630 aa44.32■■■■■ 4.69
NKX6-3-201ENST00000518699 BICRAQ9NZM4 1560 aa44.05■■■■■ 4.64
NKX6-3-201ENST00000518699 PABPN1Q86U42 306 aaKnown RBP eCLIP43.75■■■■■ 4.59
NKX6-3-201ENST00000518699 SHROOM4Q9ULL8 1493 aa43.71■■■■■ 4.59
NKX6-3-201ENST00000518699 EIF4G1Q04637 1599 aaKnown RBP42.82■■■■■ 4.45
NKX6-3-201ENST00000518699 CECR2Q9BXF3 1484 aa42.61■■■■■ 4.41
NKX6-3-201ENST00000518699 BAZ1AQ9NRL2 1556 aaPredicted RBP42.52■■■■■ 4.4
NKX6-3-201ENST00000518699 SMARCA4P51532 1647 aa42.5■■■■■ 4.39
NKX6-3-201ENST00000518699 CC2D2AQ9P2K1 1620 aa42.48■■■■■ 4.39
NKX6-3-201ENST00000518699 DNAJC5BQ9UF47 199 aa42.36■■■■■ 4.37
NKX6-3-201ENST00000518699 MROH2BQ7Z745 1585 aa42.27■■■■■ 4.36
NKX6-3-201ENST00000518699 PEG3Q9GZU2 1588 aa42.12■■■■■ 4.33
NKX6-3-201ENST00000518699 SMARCA2P51531 1590 aa42.08■■■■■ 4.33
NKX6-3-201ENST00000518699 ATAD2BQ9ULI0 1458 aa42.05■■■■■ 4.32
NKX6-3-201ENST00000518699 RSF1Q96T23 1441 aaPredicted RBP41.96■■■■■ 4.31
NKX6-3-201ENST00000518699 NCAPD3P42695 1498 aa41.94■■■■■ 4.31
NKX6-3-201ENST00000518699 HMGXB3Q12766 1538 aa41.88■■■■■ 4.29
NKX6-3-201ENST00000518699 WIZO95785 1651 aa41.87■■■■■ 4.29
NKX6-3-201ENST00000518699 BAZ1BQ9UIG0 1483 aaKnown RBP41.74■■■■■ 4.27
NKX6-3-201ENST00000518699 TOP2AP11388 1531 aaKnown RBP41.5■■■■■ 4.23
NKX6-3-201ENST00000518699 SUPT5HO00267 1087 aaKnown RBP41.14■■■■■ 4.18
NKX6-3-201ENST00000518699 CCDC88BA6NC98 1476 aa40.91■■■■■ 4.14
NKX6-3-201ENST00000518699 LAMC3Q9Y6N6 1575 aa40.81■■■■■ 4.12
NKX6-3-201ENST00000518699 NESP48681 1621 aa40.72■■■■■ 4.11
NKX6-3-201ENST00000518699 CADPSQ9ULU8 1353 aa40.7■■■■■ 4.11
NKX6-3-201ENST00000518699 CFTRP13569 1480 aa40.65■■■■■ 4.1
NKX6-3-201ENST00000518699 PRDM2Q13029 1718 aa40.57■■■■■ 4.08
NKX6-3-201ENST00000518699 PDS5BQ9NTI5 1447 aa40.42■■■■■ 4.06
NKX6-3-201ENST00000518699 KIF21AQ7Z4S6 1674 aa40.37■■■■■ 4.05
NKX6-3-201ENST00000518699 ERCC6Q03468 1493 aa40.33■■■■■ 4.05
NKX6-3-201ENST00000518699 FANCD2Q9BXW9 1451 aa40.27■■■■■ 4.04
NKX6-3-201ENST00000518699 CEP164Q9UPV0 1460 aa40.19■■■■■ 4.02
NKX6-3-201ENST00000518699 THOC2Q8NI27 1593 aaKnown RBP40.12■■■■■ 4.01
NKX6-3-201ENST00000518699 MRC2Q9UBG0 1479 aa40.02■■■■■ 4
NKX6-3-201ENST00000518699 WDR62O43379 1518 aa39.93■■■■□ 3.98
NKX6-3-201ENST00000518699 URB2Q14146 1524 aaKnown RBP39.86■■■■□ 3.97
NKX6-3-201ENST00000518699 CUX2O14529 1486 aa39.78■■■■□ 3.96
NKX6-3-201ENST00000518699 DNMBPQ6XZF7 1577 aa39.77■■■■□ 3.96
NKX6-3-201ENST00000518699 ABCC8Q09428 1581 aa39.75■■■■□ 3.95
NKX6-3-201ENST00000518699 TOPBP1Q92547 1522 aa39.72■■■■□ 3.95
NKX6-3-201ENST00000518699 CUX1P39880 1505 aa39.64■■■■□ 3.94
NKX6-3-201ENST00000518699 WRNQ14191 1432 aaPredicted RBP eCLIP39.56■■■■□ 3.92
NKX6-3-201ENST00000518699 BIVM-ERCC5R4GMW8 1640 aa39.53■■■■□ 3.92
NKX6-3-201ENST00000518699 SYNJ1O43426 1573 aa39.5■■■■□ 3.91
NKX6-3-201ENST00000518699 TOP2BQ02880 1626 aa39.5■■■■□ 3.91
NKX6-3-201ENST00000518699 POLA1P09884 1462 aaPredicted RBP39.41■■■■□ 3.9
NKX6-3-201ENST00000518699 FGD5Q6ZNL6 1462 aa39.4■■■■□ 3.9
NKX6-3-201ENST00000518699 IFT140Q96RY7 1462 aa39.32■■■■□ 3.88
NKX6-3-201ENST00000518699 TARBP1Q13395 1621 aaKnown RBP39.3■■■■□ 3.88
NKX6-3-201ENST00000518699 WDR97A6NE52 1622 aa39.19■■■■□ 3.86
NKX6-3-201ENST00000518699 SOGA1O94964 1423 aa39.18■■■■□ 3.86
NKX6-3-201ENST00000518699 RAD54L2Q9Y4B4 1467 aa39.17■■■■□ 3.86
NKX6-3-201ENST00000518699 ABCA10Q8WWZ4 1543 aa39.07■■■■□ 3.85
NKX6-3-201ENST00000518699 ZNF608Q9ULD9 1512 aaPredicted RBP39.05■■■■□ 3.84
NKX6-3-201ENST00000518699 EIF4G3O43432 1585 aaKnown RBP39.03■■■■□ 3.84
NKX6-3-201ENST00000518699 ABCA5Q8WWZ7 1642 aa38.93■■■■□ 3.82
NKX6-3-201ENST00000518699 TRIM41Q8WV44 630 aa38.88■■■■□ 3.81
NKX6-3-201ENST00000518699 AQRO60306 1485 aaKnown RBP eCLIP38.86■■■■□ 3.81
NKX6-3-201ENST00000518699 TDRD9Q8NDG6 1382 aaKnown RBP38.86■■■■□ 3.81
NKX6-3-201ENST00000518699 PBRM1Q86U86 1689 aa38.81■■■■□ 3.8
NKX6-3-201ENST00000518699 CHIC1Q5VXU3 224 aa38.8■■■■□ 3.8
NKX6-3-201ENST00000518699 GAPVD1Q14C86 1478 aa38.79■■■■□ 3.8
NKX6-3-201ENST00000518699 GRIN2BQ13224 1484 aa38.72■■■■□ 3.79
NKX6-3-201ENST00000518699 KIF27Q86VH2 1401 aa38.68■■■■□ 3.78
NKX6-3-201ENST00000518699 ERICH3Q5RHP9 1530 aa38.64■■■■□ 3.78
NKX6-3-201ENST00000518699 MAGI1Q96QZ7 1491 aaPredicted RBP38.6■■■■□ 3.77
NKX6-3-201ENST00000518699 SNAPC4Q5SXM2 1469 aa38.59■■■■□ 3.77
NKX6-3-201ENST00000518699 ADAMTS12P58397 1594 aa38.52■■■■□ 3.76
NKX6-3-201ENST00000518699 RUSC2Q8N2Y8 1516 aa38.47■■■■□ 3.75
NKX6-3-201ENST00000518699 CUL7Q14999 1698 aa38.45■■■■□ 3.75
NKX6-3-201ENST00000518699 CHD1O14646 1710 aa38.44■■■■□ 3.74
NKX6-3-201ENST00000518699 SYNJ2O15056 1496 aa38.42■■■■□ 3.74
NKX6-3-201ENST00000518699 IGF1RP08069 1367 aa38.4■■■■□ 3.74
NKX6-3-201ENST00000518699 FHAD1B1AJZ9 1412 aa38.37■■■■□ 3.73
NKX6-3-201ENST00000518699 EEA1Q15075 1411 aa38.37■■■■□ 3.73
NKX6-3-201ENST00000518699 GRIN2AQ12879 1464 aa38.25■■■■□ 3.71
NKX6-3-201ENST00000518699 CHMP7Q8WUX9 453 aaPredicted RBP38.2■■■■□ 3.71
NKX6-3-201ENST00000518699 CARMIL1Q5VZK9 1371 aa38.19■■■■□ 3.7
NKX6-3-201ENST00000518699 FBLN2P98095 1184 aa38.16■■■■□ 3.7
NKX6-3-201ENST00000518699 PRXQ9BXM0 1461 aa38.12■■■■□ 3.69
NKX6-3-201ENST00000518699 CSRNP3Q8WYN3 585 aa38.08■■■■□ 3.69
NKX6-3-201ENST00000518699 RAPGEF2Q9Y4G8 1499 aa38.08■■■■□ 3.69
NKX6-3-201ENST00000518699 NUP160Q12769 1436 aa38.07■■■■□ 3.68
NKX6-3-201ENST00000518699 OSCARQ8IYS5 282 aa38.06■■■■□ 3.68
NKX6-3-201ENST00000518699 CEP170Q5SW79 1584 aa38.06■■■■□ 3.68
NKX6-3-201ENST00000518699 CLASP1Q7Z460 1538 aa38.03■■■■□ 3.68
NKX6-3-201ENST00000518699 KIF21BO75037 1637 aa37.99■■■■□ 3.67
NKX6-3-201ENST00000518699 FAM9AQ8IZU1 332 aaPredicted RBP37.99■■■■□ 3.67
NKX6-3-201ENST00000518699 CTTNBP2Q8WZ74 1663 aa37.83■■■■□ 3.65
NKX6-3-201ENST00000518699 KIAA0586Q9BVV6 1533 aa37.81■■■■□ 3.64
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms