RNA–Protein interactions for RNA: ENST00000263202.14

UFD1-201, Transcript of ubiquitin recognition factor in ER associated degradation 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UFD1, Length 1,814 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UFD1-201ENST00000263202 NISCHQ9Y2I1 1504 aa52.6■■■■■ 6.01
UFD1-201ENST00000263202 CCDC180Q9P1Z9 1646 aa46.17■■■■■ 4.98
UFD1-201ENST00000263202 ZCCHC6Q5VYS8 1495 aaKnown RBP44.09■■■■■ 4.65
UFD1-201ENST00000263202 ABCC9O60706 1549 aa43.95■■■■■ 4.63
UFD1-201ENST00000263202 DCAF1Q9Y4B6 1507 aa43.53■■■■■ 4.56
UFD1-201ENST00000263202 DCAF8L2P0C7V8 631 aa43.45■■■■■ 4.55
UFD1-201ENST00000263202 MYO15BQ96JP2 1530 aa43.19■■■■■ 4.51
UFD1-201ENST00000263202 NACADO15069 1562 aa43.06■■■■■ 4.48
UFD1-201ENST00000263202 RB1CC1Q8TDY2 1594 aa42.8■■■■■ 4.44
UFD1-201ENST00000263202 SHROOM4Q9ULL8 1493 aa42.46■■■■■ 4.39
UFD1-201ENST00000263202 SCRIBQ14160 1630 aa42.31■■■■■ 4.36
UFD1-201ENST00000263202 UNC13AQ9UPW8 1703 aa42.01■■■■■ 4.32
UFD1-201ENST00000263202 BICRAQ9NZM4 1560 aa41.53■■■■■ 4.24
UFD1-201ENST00000263202 PABPN1Q86U42 306 aaKnown RBP eCLIP41.3■■■■■ 4.2
UFD1-201ENST00000263202 CECR2Q9BXF3 1484 aa40.88■■■■■ 4.13
UFD1-201ENST00000263202 BAZ1AQ9NRL2 1556 aaPredicted RBP40.66■■■■■ 4.1
UFD1-201ENST00000263202 MROH2BQ7Z745 1585 aa40.61■■■■■ 4.09
UFD1-201ENST00000263202 SUPT5HO00267 1087 aaKnown RBP40.6■■■■■ 4.09
UFD1-201ENST00000263202 RSF1Q96T23 1441 aaPredicted RBP40.59■■■■■ 4.09
UFD1-201ENST00000263202 SMARCA4P51532 1647 aa40.56■■■■■ 4.08
UFD1-201ENST00000263202 EIF4G1Q04637 1599 aaKnown RBP40.3■■■■■ 4.04
UFD1-201ENST00000263202 WIZO95785 1651 aa40.28■■■■■ 4.04
UFD1-201ENST00000263202 PEG3Q9GZU2 1588 aa40.1■■■■■ 4.01
UFD1-201ENST00000263202 ATAD2BQ9ULI0 1458 aa39.97■■■■□ 3.99
UFD1-201ENST00000263202 SMARCA2P51531 1590 aa39.96■■■■□ 3.99
UFD1-201ENST00000263202 TOP2AP11388 1531 aaKnown RBP39.84■■■■□ 3.97
UFD1-201ENST00000263202 CC2D2AQ9P2K1 1620 aa39.82■■■■□ 3.97
UFD1-201ENST00000263202 NCAPD3P42695 1498 aa39.71■■■■□ 3.95
UFD1-201ENST00000263202 BAZ1BQ9UIG0 1483 aaKnown RBP39.71■■■■□ 3.95
UFD1-201ENST00000263202 HMGXB3Q12766 1538 aa39.65■■■■□ 3.94
UFD1-201ENST00000263202 CCDC88BA6NC98 1476 aa39.39■■■■□ 3.9
UFD1-201ENST00000263202 DNAJC5BQ9UF47 199 aa39.17■■■■□ 3.86
UFD1-201ENST00000263202 CFTRP13569 1480 aa38.7■■■■□ 3.79
UFD1-201ENST00000263202 CHIC1Q5VXU3 224 aa38.66■■■■□ 3.78
UFD1-201ENST00000263202 CADPSQ9ULU8 1353 aa38.64■■■■□ 3.78
UFD1-201ENST00000263202 PRDM2Q13029 1718 aa38.6■■■■□ 3.77
UFD1-201ENST00000263202 LAMC3Q9Y6N6 1575 aa38.48■■■■□ 3.75
UFD1-201ENST00000263202 NESP48681 1621 aa38.45■■■■□ 3.75
UFD1-201ENST00000263202 ABCC8Q09428 1581 aa38.42■■■■□ 3.74
UFD1-201ENST00000263202 TRIM41Q8WV44 630 aa38.23■■■■□ 3.71
UFD1-201ENST00000263202 FANCD2Q9BXW9 1451 aa38.22■■■■□ 3.71
UFD1-201ENST00000263202 WRNQ14191 1432 aaPredicted RBP eCLIP38.21■■■■□ 3.71
UFD1-201ENST00000263202 PDS5BQ9NTI5 1447 aa38.13■■■■□ 3.69
UFD1-201ENST00000263202 SYNJ1O43426 1573 aa38.12■■■■□ 3.69
UFD1-201ENST00000263202 KIF21AQ7Z4S6 1674 aa38.07■■■■□ 3.69
UFD1-201ENST00000263202 CEP164Q9UPV0 1460 aa38.03■■■■□ 3.68
UFD1-201ENST00000263202 TOP2BQ02880 1626 aa38.02■■■■□ 3.68
UFD1-201ENST00000263202 BIVM-ERCC5R4GMW8 1640 aa38.01■■■■□ 3.68
UFD1-201ENST00000263202 CUX1P39880 1505 aa38.01■■■■□ 3.67
UFD1-201ENST00000263202 DNMBPQ6XZF7 1577 aa37.83■■■■□ 3.65
UFD1-201ENST00000263202 URB2Q14146 1524 aaKnown RBP37.79■■■■□ 3.64
UFD1-201ENST00000263202 TOPBP1Q92547 1522 aa37.77■■■■□ 3.64
UFD1-201ENST00000263202 ERCC6Q03468 1493 aa37.73■■■■□ 3.63
UFD1-201ENST00000263202 MRC2Q9UBG0 1479 aa37.69■■■■□ 3.62
UFD1-201ENST00000263202 FGD5Q6ZNL6 1462 aa37.65■■■■□ 3.62
UFD1-201ENST00000263202 SOGA1O94964 1423 aa37.57■■■■□ 3.6
UFD1-201ENST00000263202 THOC2Q8NI27 1593 aaKnown RBP37.56■■■■□ 3.6
UFD1-201ENST00000263202 WDR62O43379 1518 aa37.54■■■■□ 3.6
UFD1-201ENST00000263202 POLA1P09884 1462 aaPredicted RBP37.54■■■■□ 3.6
UFD1-201ENST00000263202 FAM9AQ8IZU1 332 aaPredicted RBP37.48■■■■□ 3.59
UFD1-201ENST00000263202 RUSC2Q8N2Y8 1516 aa37.47■■■■□ 3.59
UFD1-201ENST00000263202 EEA1Q15075 1411 aa37.42■■■■□ 3.58
UFD1-201ENST00000263202 RAD54L2Q9Y4B4 1467 aa37.39■■■■□ 3.58
UFD1-201ENST00000263202 WDR97A6NE52 1622 aa37.32■■■■□ 3.57
UFD1-201ENST00000263202 ABCA10Q8WWZ4 1543 aa37.32■■■■□ 3.56
UFD1-201ENST00000263202 CUX2O14529 1486 aa37.29■■■■□ 3.56
UFD1-201ENST00000263202 TARBP1Q13395 1621 aaKnown RBP37.29■■■■□ 3.56
UFD1-201ENST00000263202 KIF27Q86VH2 1401 aa37.28■■■■□ 3.56
UFD1-201ENST00000263202 CSRNP3Q8WYN3 585 aa37.22■■■■□ 3.55
UFD1-201ENST00000263202 IFT140Q96RY7 1462 aa37.15■■■■□ 3.54
UFD1-201ENST00000263202 LOC105371045A0A1W2PR82 267 aa37.13■■■■□ 3.53
UFD1-201ENST00000263202 ABCA5Q8WWZ7 1642 aa37.09■■■■□ 3.53
UFD1-201ENST00000263202 TDRD9Q8NDG6 1382 aaKnown RBP37.04■■■■□ 3.52
UFD1-201ENST00000263202 KIF21BO75037 1637 aa37.01■■■■□ 3.52
UFD1-201ENST00000263202 IGF1RP08069 1367 aa37■■■■□ 3.51
UFD1-201ENST00000263202 GAPVD1Q14C86 1478 aa36.98■■■■□ 3.51
UFD1-201ENST00000263202 ZNF608Q9ULD9 1512 aaPredicted RBP36.96■■■■□ 3.51
UFD1-201ENST00000263202 EHMT2Q96KQ7 1210 aa36.94■■■■□ 3.5
UFD1-201ENST00000263202 PRXQ9BXM0 1461 aa36.93■■■■□ 3.5
UFD1-201ENST00000263202 AQRO60306 1485 aaKnown RBP eCLIP36.9■■■■□ 3.51e-7■■■■■ 26.8
UFD1-201ENST00000263202 PBRM1Q86U86 1689 aa36.9■■■■□ 3.5
UFD1-201ENST00000263202 ERICH3Q5RHP9 1530 aa36.89■■■■□ 3.5
UFD1-201ENST00000263202 GOLGA3Q08378 1498 aa36.88■■■■□ 3.49
UFD1-201ENST00000263202 EIF4G3O43432 1585 aaKnown RBP36.87■■■■□ 3.49
UFD1-201ENST00000263202 CUL7Q14999 1698 aa36.84■■■■□ 3.49
UFD1-201ENST00000263202 RAPGEF2Q9Y4G8 1499 aa36.84■■■■□ 3.49
UFD1-201ENST00000263202 CARMIL1Q5VZK9 1371 aa36.8■■■■□ 3.48
UFD1-201ENST00000263202 GRIN2BQ13224 1484 aa36.77■■■■□ 3.48
UFD1-201ENST00000263202 UBTFP17480 764 aaKnown RBP36.67■■■■□ 3.46
UFD1-201ENST00000263202 TNIKQ9UKE5 1360 aa36.67■■■■□ 3.46
UFD1-201ENST00000263202 ADAMTS12P58397 1594 aa36.63■■■■□ 3.45
UFD1-201ENST00000263202 SNAPC4Q5SXM2 1469 aa36.58■■■■□ 3.45
UFD1-201ENST00000263202 FHAD1B1AJZ9 1412 aa36.57■■■■□ 3.45
UFD1-201ENST00000263202 MAGI1Q96QZ7 1491 aaPredicted RBP36.54■■■■□ 3.44
UFD1-201ENST00000263202 CEP162Q5TB80 1403 aa36.42■■■■□ 3.42
UFD1-201ENST00000263202 CTTNBP2Q8WZ74 1663 aa36.4■■■■□ 3.42
UFD1-201ENST00000263202 SYNJ2O15056 1496 aa36.39■■■■□ 3.42
UFD1-201ENST00000263202 GRIN2AQ12879 1464 aa36.33■■■■□ 3.41
UFD1-201ENST00000263202 CHMP7Q8WUX9 453 aaPredicted RBP36.26■■■■□ 3.39
UFD1-201ENST00000263202 CLIP1P30622 1438 aa36.25■■■■□ 3.39
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms