Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 NRP1-208ENST00000395995 5826 ntTSL 1 (best) BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 CASC4-202ENST00000345795 3764 ntAPPRIS ALT1 TSL 1 (best) BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 TIAM2-201ENST00000275246 2491 ntTSL 1 (best) BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 AL358781.1-202ENST00000321081 1360 ntBASIC8.86□□□□□ -0.99
LINC00643Q86TS7 HEY2-202ENST00000368365 2461 ntTSL 2 BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 PHB-215ENST00000617874 1908 ntAPPRIS P1 TSL 5 BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 PUM2-203ENST00000361078 6251 ntTSL 2 BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 SEPT4-223ENST00000583114 1709 ntTSL 2 BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 COL9A1-202ENST00000357250 4761 ntAPPRIS P1 TSL 1 (best) BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 SMAP1-203ENST00000370455 3333 ntAPPRIS ALT1 TSL 1 (best) BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 SUGP1-201ENST00000247001 2423 ntAPPRIS P1 TSL 1 (best) BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 PHC2-203ENST00000373422 2799 ntTSL 2 BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 ITGA4-203ENST00000397033 4189 ntAPPRIS P1 TSL 1 (best) BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 FLNB-204ENST00000429972 9430 ntAPPRIS ALT2 TSL 1 (best) BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 METTL16-201ENST00000263092 5711 ntAPPRIS P1 TSL 1 (best) BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 NUAK2-201ENST00000367157 3441 ntAPPRIS P1 TSL 1 (best) BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 NLGN3-202ENST00000374051 3913 ntTSL 1 (best) BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 PMS2-201ENST00000265849 2855 ntAPPRIS P1 TSL 1 (best) BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 ACOX3-201ENST00000356406 2860 ntAPPRIS P1 TSL 1 (best) BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 HECTD3-201ENST00000372168 2530 ntTSL 2 BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 RPS10P7-201ENST00000441932 2329 ntTSL 2 BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 GEMIN4-207ENST00000576778 4729 ntBASIC8.85□□□□□ -0.99
LINC00643Q86TS7 DIDO1-205ENST00000370371 2833 ntTSL 1 (best) BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 CCDC88A-207ENST00000436346 9811 ntAPPRIS ALT2 TSL 5 BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 PLA2G4E-AS1-201ENST00000499478 2499 ntTSL 1 (best) BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 FAM222B-209ENST00000581407 4161 ntAPPRIS P1 TSL 1 (best) BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 CDH16-201ENST00000299752 2954 ntAPPRIS P1 TSL 1 (best) BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 AGK-201ENST00000355413 3849 ntAPPRIS P1 TSL 1 (best) BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 EEF1DP4-201ENST00000446006 880 ntBASIC8.85□□□□□ -0.99
LINC00643Q86TS7 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 CFL1-202ENST00000524553 860 ntTSL 2 BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 MMP17-203ENST00000535004 719 ntTSL 3 BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 AL138781.1-201ENST00000566567 1274 ntBASIC8.85□□□□□ -0.99
LINC00643Q86TS7 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 KLK3-207ENST00000595952 969 ntTSL 3 BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 TRPV1-204ENST00000425167 2607 ntTSL 1 (best) BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 OR10H5-202ENST00000642092 7044 ntAPPRIS P1 BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 AGAP3-226ENST00000622464 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 ADGRE5-203ENST00000358600 2751 ntTSL 1 (best) BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 LINC01134-202ENST00000439488 1940 ntTSL 1 (best) BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 PPP1R26P2-201ENST00000611403 3595 ntBASIC8.85□□□□□ -0.99
LINC00643Q86TS7 ACACB-201ENST00000338432 9360 ntAPPRIS P1 TSL 1 (best) BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 SLC5A6-201ENST00000310574 3231 ntAPPRIS P1 TSL 1 (best) BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 TRIM68-201ENST00000300747 3352 ntAPPRIS P1 TSL 1 (best) BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 PDE1B-203ENST00000538346 1711 ntTSL 2 BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 PRRX1-207ENST00000497230 3501 ntTSL 2 BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 HSPA6-201ENST00000309758 2371 ntAPPRIS P1 BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 ZNF461-201ENST00000360357 2361 ntAPPRIS ALT2 TSL 2 BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 RAB43-205ENST00000393308 4193 ntAPPRIS P1 TSL 4 BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 RBFOX1-224ENST00000641259 3651 ntBASIC8.85□□□□□ -0.99
LINC00643Q86TS7 CYP11B1-204ENST00000517471 1874 ntTSL 1 (best) BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 LANCL1-207ENST00000450366 4602 ntAPPRIS P1 TSL 1 (best) BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 HNRNPF-202ENST00000356053 2670 ntAPPRIS P1 TSL 2 BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 HNRNPF-207ENST00000544000 2676 ntAPPRIS P1 TSL 1 (best) BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 STAG1-203ENST00000434713 5064 ntTSL 5 BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 FOSB-206ENST00000586615 3774 ntTSL 1 (best) BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 THBS1-201ENST00000260356 7775 ntAPPRIS P1 TSL 1 (best) BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC8.85□□□□□ -0.99
LINC00643Q86TS7 AL445647.1-201ENST00000606221 3599 ntBASIC8.84□□□□□ -0.99
LINC00643Q86TS7 FDXACB1-201ENST00000260257 2789 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 TNIP1-201ENST00000315050 2785 ntAPPRIS P3 TSL 1 (best) BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 SMIM5-202ENST00000537494 4344 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 ITGB6-204ENST00000409967 2292 ntTSL 3 BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 KCTD7-209ENST00000640385 4118 ntTSL 5 BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 DPY19L1-201ENST00000310974 4870 ntAPPRIS P2 TSL 1 (best) BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 Z83836.1-201ENST00000624605 1642 ntBASIC8.84□□□□□ -0.99
LINC00643Q86TS7 BCAR1-203ENST00000393422 4064 ntAPPRIS ALT2 TSL 2 BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 RAPGEF3-202ENST00000395358 4092 ntTSL 2 BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 AGGF1-201ENST00000312916 4509 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 DCAF4-213ENST00000555042 2374 ntAPPRIS ALT2 TSL 2 BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 SLIT2-201ENST00000273739 5132 ntTSL 5 BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 WFS1-202ENST00000503569 3255 ntAPPRIS P2 TSL 1 (best) BASIC8.84□□□□□ -0.99
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms