RNA–Protein interactions for RNA: ENST00000345795.6

CASC4-202, Transcript of cancer susceptibility 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CASC4, Length 3,764 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC4-202ENST00000345795 NISCHQ9Y2I1 1504 aa25.88■■□□□ 1.73
CASC4-202ENST00000345795 DCAF8L2P0C7V8 631 aa24.51■■□□□ 1.51
CASC4-202ENST00000345795 SHROOM4Q9ULL8 1493 aa24.06■■□□□ 1.44
CASC4-202ENST00000345795 SUPT5HO00267 1087 aaKnown RBP23.72■■□□□ 1.39
CASC4-202ENST00000345795 EHMT2Q96KQ7 1210 aa22.81■■□□□ 1.24
CASC4-202ENST00000345795 FAM9AQ8IZU1 332 aaPredicted RBP22.28■■□□□ 1.16
CASC4-202ENST00000345795 ABCC9O60706 1549 aa21.9■■□□□ 1.1
CASC4-202ENST00000345795 LOC105371045A0A1W2PR82 267 aa21.9■■□□□ 1.1
CASC4-202ENST00000345795 PCGF6Q9BYE7 350 aa21.88■■□□□ 1.09
CASC4-202ENST00000345795 TTBK1Q5TCY1 1321 aaPredicted RBP21.87■■□□□ 1.09
CASC4-202ENST00000345795 CHIC1Q5VXU3 224 aa21.83■■□□□ 1.09
CASC4-202ENST00000345795 PPARGC1BQ86YN6 1023 aaKnown RBP21.71■■□□□ 1.07
CASC4-202ENST00000345795 TRIM41Q8WV44 630 aa21.64■■□□□ 1.05
CASC4-202ENST00000345795 ZCCHC6Q5VYS8 1495 aaKnown RBP21.6■■□□□ 1.05
CASC4-202ENST00000345795 RANGAP1P46060 587 aaPredicted RBP21.58■■□□□ 1.04
CASC4-202ENST00000345795 PABPN1Q86U42 306 aaKnown RBP eCLIP21.57■■□□□ 1.04
CASC4-202ENST00000345795 SCRIBQ14160 1630 aa21.27■■□□□ 1
CASC4-202ENST00000345795 MYO15BQ96JP2 1530 aa21.2■□□□□ 0.98
CASC4-202ENST00000345795 CCDC180Q9P1Z9 1646 aa21.17■□□□□ 0.98
CASC4-202ENST00000345795 UBTFP17480 764 aaKnown RBP21.04■□□□□ 0.96
CASC4-202ENST00000345795 HRCP23327 699 aa20.82■□□□□ 0.92
CASC4-202ENST00000345795 CECR2Q9BXF3 1484 aa20.78■□□□□ 0.92
CASC4-202ENST00000345795 RSF1Q96T23 1441 aaPredicted RBP20.76■□□□□ 0.91
CASC4-202ENST00000345795 TRIM26Q12899 539 aaPredicted RBP20.73■□□□□ 0.91
CASC4-202ENST00000345795 CCER1Q8TC90 406 aaPredicted RBP20.69■□□□□ 0.9
CASC4-202ENST00000345795 ATP1B4Q9UN42 357 aaPredicted RBP20.69■□□□□ 0.9
CASC4-202ENST00000345795 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.67■□□□□ 0.9
CASC4-202ENST00000345795 APLP2Q06481 763 aa20.62■□□□□ 0.89
CASC4-202ENST00000345795 HNRNPUL2Q1KMD3 747 aaKnown RBP20.55■□□□□ 0.88
CASC4-202ENST00000345795 ITGAEP38570 1179 aa20.5■□□□□ 0.87
CASC4-202ENST00000345795 RB1CC1Q8TDY2 1594 aa20.44■□□□□ 0.86
CASC4-202ENST00000345795 MROH2BQ7Z745 1585 aa20.41■□□□□ 0.86
CASC4-202ENST00000345795 DCAF1Q9Y4B6 1507 aa20.34■□□□□ 0.85
CASC4-202ENST00000345795 CSRNP3Q8WYN3 585 aa20.25■□□□□ 0.83
CASC4-202ENST00000345795 YTHDC1Q96MU7 727 aaKnown RBP20.24■□□□□ 0.83
CASC4-202ENST00000345795 P3H3Q8IVL6 736 aa20.22■□□□□ 0.83
CASC4-202ENST00000345795 NACADO15069 1562 aa20.21■□□□□ 0.83
CASC4-202ENST00000345795 WIZO95785 1651 aa20.19■□□□□ 0.82
CASC4-202ENST00000345795 ABCC8Q09428 1581 aa20.13■□□□□ 0.81
CASC4-202ENST00000345795 ARID3CA6NKF2 412 aa20.09■□□□□ 0.81
CASC4-202ENST00000345795 SOGA1O94964 1423 aa20.08■□□□□ 0.8
CASC4-202ENST00000345795 ZEB1P37275 1124 aaPredicted RBP20.06■□□□□ 0.8
CASC4-202ENST00000345795 CCDC88BA6NC98 1476 aa20■□□□□ 0.79
CASC4-202ENST00000345795 BAZ1AQ9NRL2 1556 aaPredicted RBP19.91■□□□□ 0.78
CASC4-202ENST00000345795 RUSC2Q8N2Y8 1516 aa19.9■□□□□ 0.78
CASC4-202ENST00000345795 FAM50AQ14320 339 aaKnown RBP19.86■□□□□ 0.77
CASC4-202ENST00000345795 WRNQ14191 1432 aaPredicted RBP eCLIP19.82■□□□□ 0.76
CASC4-202ENST00000345795 BAZ1BQ9UIG0 1483 aaKnown RBP19.81■□□□□ 0.76
CASC4-202ENST00000345795 CEP162Q5TB80 1403 aa19.81■□□□□ 0.76
CASC4-202ENST00000345795 CNGB1Q14028 1251 aaPredicted RBP19.8■□□□□ 0.76
CASC4-202ENST00000345795 DIEXFQ68CQ4 756 aaKnown RBP19.78■□□□□ 0.76
CASC4-202ENST00000345795 FBLN2P98095 1184 aa19.77■□□□□ 0.75
CASC4-202ENST00000345795 NEUROD1Q13562 356 aa19.74■□□□□ 0.75
CASC4-202ENST00000345795 CLIP1P30622 1438 aa19.64■□□□□ 0.73
CASC4-202ENST00000345795 SMARCA4P51532 1647 aa19.62■□□□□ 0.73
CASC4-202ENST00000345795 HIRIP3Q9BW71 556 aaPredicted RBP19.56■□□□□ 0.72
CASC4-202ENST00000345795 TOP2AP11388 1531 aaKnown RBP19.55■□□□□ 0.72
CASC4-202ENST00000345795 DNAJC5BQ9UF47 199 aa19.55■□□□□ 0.72
CASC4-202ENST00000345795 ATAD2BQ9ULI0 1458 aa19.54■□□□□ 0.72
CASC4-202ENST00000345795 KANK4Q5T7N3 995 aaPredicted RBP19.53■□□□□ 0.72
CASC4-202ENST00000345795 CENPBP07199 599 aaPredicted RBP19.5■□□□□ 0.71
CASC4-202ENST00000345795 TNIKQ9UKE5 1360 aa19.49■□□□□ 0.71
CASC4-202ENST00000345795 POLR3GLQ9BT43 218 aa19.49■□□□□ 0.71
CASC4-202ENST00000345795 GOLGA3Q08378 1498 aa19.48■□□□□ 0.71
CASC4-202ENST00000345795 SMARCA2P51531 1590 aa19.48■□□□□ 0.71
CASC4-202ENST00000345795 CHIC2Q9UKJ5 165 aa19.45■□□□□ 0.7
CASC4-202ENST00000345795 RAPGEF2Q9Y4G8 1499 aa19.43■□□□□ 0.7
CASC4-202ENST00000345795 ZNF316A6NFI3 1004 aaPredicted RBP19.4■□□□□ 0.7
CASC4-202ENST00000345795 TRIM52Q96A61 297 aa19.4■□□□□ 0.7
CASC4-202ENST00000345795 GTF3C3Q9Y5Q9 886 aa19.37■□□□□ 0.69
CASC4-202ENST00000345795 ZNF777Q9ULD5 760 aaPredicted RBP19.34■□□□□ 0.69
CASC4-202ENST00000345795 CUX2O14529 1486 aa19.33■□□□□ 0.69
CASC4-202ENST00000345795 CEP164Q9UPV0 1460 aa19.32■□□□□ 0.68
CASC4-202ENST00000345795 MIER1Q8N108 512 aa19.31■□□□□ 0.68
CASC4-202ENST00000345795 TDRD9Q8NDG6 1382 aaKnown RBP19.3■□□□□ 0.68
CASC4-202ENST00000345795 BICRAQ9NZM4 1560 aa19.3■□□□□ 0.68
CASC4-202ENST00000345795 ZNF326Q5BKZ1 582 aaKnown RBP19.3■□□□□ 0.68
CASC4-202ENST00000345795 KIF27Q86VH2 1401 aa19.28■□□□□ 0.68
CASC4-202ENST00000345795 SCAF1Q9H7N4 1312 aaKnown RBP19.25■□□□□ 0.67
CASC4-202ENST00000345795 SIN3AQ96ST3 1273 aa19.25■□□□□ 0.67
CASC4-202ENST00000345795 EEA1Q15075 1411 aa19.25■□□□□ 0.67
CASC4-202ENST00000345795 RRP7BPQ9NSQ0 103 aa19.21■□□□□ 0.67
CASC4-202ENST00000345795 MYT1LQ9UL68 1186 aa19.21■□□□□ 0.67
CASC4-202ENST00000345795 SYNJ1O43426 1573 aa19.2■□□□□ 0.66
CASC4-202ENST00000345795 BCANQ96GW7 911 aa19.2■□□□□ 0.66
CASC4-202ENST00000345795 CARMIL1Q5VZK9 1371 aa19.19■□□□□ 0.66
CASC4-202ENST00000345795 SENP3-EIF4A1A0A087X0R7 540 aa19.19■□□□□ 0.66
CASC4-202ENST00000345795 UNC13AQ9UPW8 1703 aa19.17■□□□□ 0.66
CASC4-202ENST00000345795 DDX10Q13206 875 aaKnown RBP19.17■□□□□ 0.66
CASC4-202ENST00000345795 ACIN1Q9UKV3 1341 aaKnown RBP19.13■□□□□ 0.65
CASC4-202ENST00000345795 VPS8Q8N3P4 1428 aa19.13■□□□□ 0.65
CASC4-202ENST00000345795 NESP48681 1621 aa19.12■□□□□ 0.65
CASC4-202ENST00000345795 CADPSQ9ULU8 1353 aa19.11■□□□□ 0.65
CASC4-202ENST00000345795 EIF4G1Q04637 1599 aaKnown RBP19.11■□□□□ 0.65
CASC4-202ENST00000345795 RAD54L2Q9Y4B4 1467 aa19.09■□□□□ 0.65
CASC4-202ENST00000345795 MTUS2Q5JR59 1369 aa19.08■□□□□ 0.65
CASC4-202ENST00000345795 CHMP7Q8WUX9 453 aaPredicted RBP19.05■□□□□ 0.64
CASC4-202ENST00000345795 FHOD3Q2V2M9 1422 aa19.04■□□□□ 0.64
CASC4-202ENST00000345795 FOXD1Q16676 465 aa19.03■□□□□ 0.64
CASC4-202ENST00000345795 SENP3Q9H4L4 574 aaPredicted RBP19.01■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms