RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 NISCHQ9Y2I1 1504 aa20.61■□□□□ 0.89
COL9A1-202ENST00000357250 DCAF8L2P0C7V8 631 aa20.45■□□□□ 0.86
COL9A1-202ENST00000357250 SHROOM4Q9ULL8 1493 aa19.51■□□□□ 0.71
COL9A1-202ENST00000357250 SUPT5HO00267 1087 aaKnown RBP19.5■□□□□ 0.71
COL9A1-202ENST00000357250 EHMT2Q96KQ7 1210 aa18.78■□□□□ 0.6
COL9A1-202ENST00000357250 PELP1Q8IZL8 1130 aaKnown RBP18.52■□□□□ 0.56
COL9A1-202ENST00000357250 APLP2Q06481 763 aa18.39■□□□□ 0.54
COL9A1-202ENST00000357250 FAM9AQ8IZU1 332 aaPredicted RBP18.35■□□□□ 0.53
COL9A1-202ENST00000357250 ZEB1P37275 1124 aaPredicted RBP18.07■□□□□ 0.48
COL9A1-202ENST00000357250 TTBK1Q5TCY1 1321 aaPredicted RBP18.04■□□□□ 0.48
COL9A1-202ENST00000357250 PCGF6Q9BYE7 350 aa17.94■□□□□ 0.46
COL9A1-202ENST00000357250 TRIM41Q8WV44 630 aa17.93■□□□□ 0.46
COL9A1-202ENST00000357250 RANGAP1P46060 587 aaPredicted RBP17.9■□□□□ 0.46
COL9A1-202ENST00000357250 CENPBP07199 599 aaPredicted RBP17.87■□□□□ 0.45
COL9A1-202ENST00000357250 CCER1Q8TC90 406 aaPredicted RBP17.71■□□□□ 0.43
COL9A1-202ENST00000357250 ABCC9O60706 1549 aa17.7■□□□□ 0.42
COL9A1-202ENST00000357250 PPARGC1BQ86YN6 1023 aaKnown RBP17.66■□□□□ 0.42
COL9A1-202ENST00000357250 LOC105371045A0A1W2PR82 267 aa17.62■□□□□ 0.41
COL9A1-202ENST00000357250 UBTFP17480 764 aaKnown RBP17.62■□□□□ 0.41
COL9A1-202ENST00000357250 CHIC1Q5VXU3 224 aa17.61■□□□□ 0.41
COL9A1-202ENST00000357250 PABPN1Q86U42 306 aaKnown RBP eCLIP17.52■□□□□ 0.4
COL9A1-202ENST00000357250 ERICH6Q7L0X2 663 aa17.51■□□□□ 0.39
COL9A1-202ENST00000357250 ATP1B4Q9UN42 357 aaPredicted RBP17.46■□□□□ 0.39
COL9A1-202ENST00000357250 TRIM26Q12899 539 aaPredicted RBP17.43■□□□□ 0.38
COL9A1-202ENST00000357250 NEFLP07196 543 aa17.43■□□□□ 0.38
COL9A1-202ENST00000357250 MYT1Q01538 1121 aa17.41■□□□□ 0.38
COL9A1-202ENST00000357250 HRCP23327 699 aa17.22■□□□□ 0.35
COL9A1-202ENST00000357250 YTHDC1Q96MU7 727 aaKnown RBP17.11■□□□□ 0.33
COL9A1-202ENST00000357250 ZCCHC6Q5VYS8 1495 aaKnown RBP17.1■□□□□ 0.33
COL9A1-202ENST00000357250 ITGAEP38570 1179 aa17.05■□□□□ 0.32
COL9A1-202ENST00000357250 SCRIBQ14160 1630 aa16.99■□□□□ 0.31
COL9A1-202ENST00000357250 HNRNPUL2Q1KMD3 747 aaKnown RBP16.98■□□□□ 0.31
COL9A1-202ENST00000357250 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.89■□□□□ 0.3
COL9A1-202ENST00000357250 DAXXQ9UER7 740 aaPredicted RBP16.85■□□□□ 0.29
COL9A1-202ENST00000357250 CCDC180Q9P1Z9 1646 aa16.83■□□□□ 0.28
COL9A1-202ENST00000357250 MYT1LQ9UL68 1186 aa16.77■□□□□ 0.28
COL9A1-202ENST00000357250 POLR3GLQ9BT43 218 aa16.73■□□□□ 0.27
COL9A1-202ENST00000357250 DIEXFQ68CQ4 756 aaKnown RBP16.72■□□□□ 0.27
COL9A1-202ENST00000357250 CSRNP3Q8WYN3 585 aa16.63■□□□□ 0.25
COL9A1-202ENST00000357250 P3H3Q8IVL6 736 aa16.61■□□□□ 0.25
COL9A1-202ENST00000357250 FAM50AQ14320 339 aaKnown RBP16.6■□□□□ 0.25
COL9A1-202ENST00000357250 CNGB1Q14028 1251 aaPredicted RBP16.55■□□□□ 0.24
COL9A1-202ENST00000357250 ARID3CA6NKF2 412 aa16.54■□□□□ 0.24
COL9A1-202ENST00000357250 FBLN2P98095 1184 aa16.54■□□□□ 0.24
COL9A1-202ENST00000357250 RSF1Q96T23 1441 aaPredicted RBP16.53■□□□□ 0.24
COL9A1-202ENST00000357250 MYO15BQ96JP2 1530 aa16.52■□□□□ 0.23
COL9A1-202ENST00000357250 TRIM52Q96A61 297 aa16.51■□□□□ 0.23
COL9A1-202ENST00000357250 RTL5Q5HYW3 569 aaPredicted RBP16.49■□□□□ 0.23
COL9A1-202ENST00000357250 ANP32CO43423 234 aa16.46■□□□□ 0.23
COL9A1-202ENST00000357250 ZNF316A6NFI3 1004 aaPredicted RBP16.43■□□□□ 0.22
COL9A1-202ENST00000357250 CLSPNQ9HAW4 1339 aa16.42■□□□□ 0.22
COL9A1-202ENST00000357250 SLC4A1APQ9BWU0 796 aaKnown RBP16.41■□□□□ 0.22
COL9A1-202ENST00000357250 NEUROD1Q13562 356 aa16.41■□□□□ 0.22
COL9A1-202ENST00000357250 CECR2Q9BXF3 1484 aa16.4■□□□□ 0.22
COL9A1-202ENST00000357250 RB1CC1Q8TDY2 1594 aa16.38■□□□□ 0.21
COL9A1-202ENST00000357250 CDK11AQ9UQ88 783 aaPredicted RBP16.3■□□□□ 0.2
COL9A1-202ENST00000357250 NACADO15069 1562 aa16.29■□□□□ 0.2
COL9A1-202ENST00000357250 GTF3C3Q9Y5Q9 886 aa16.29■□□□□ 0.2
COL9A1-202ENST00000357250 DCAF1Q9Y4B6 1507 aa16.27■□□□□ 0.2
COL9A1-202ENST00000357250 ZBTB47Q9UFB7 747 aaPredicted RBP16.21■□□□□ 0.19
COL9A1-202ENST00000357250 ZNF326Q5BKZ1 582 aaKnown RBP16.2■□□□□ 0.18
COL9A1-202ENST00000357250 ACIN1Q9UKV3 1341 aaKnown RBP16.19■□□□□ 0.18
COL9A1-202ENST00000357250 ZNF777Q9ULD5 760 aaPredicted RBP16.15■□□□□ 0.18
COL9A1-202ENST00000357250 NEFMP07197 916 aa16.15■□□□□ 0.18
COL9A1-202ENST00000357250 MROH2BQ7Z745 1585 aa16.12■□□□□ 0.17
COL9A1-202ENST00000357250 BCANQ96GW7 911 aa16.11■□□□□ 0.17
COL9A1-202ENST00000357250 BAZ1BQ9UIG0 1483 aaKnown RBP16.1■□□□□ 0.17
COL9A1-202ENST00000357250 TONSLQ96HA7 1378 aa16.09■□□□□ 0.17
COL9A1-202ENST00000357250 WRNQ14191 1432 aaPredicted RBP eCLIP16.08■□□□□ 0.17
COL9A1-202ENST00000357250 CANXP27824 592 aaKnown RBP16.08■□□□□ 0.16
COL9A1-202ENST00000357250 BAZ1AQ9NRL2 1556 aaPredicted RBP16.04■□□□□ 0.16
COL9A1-202ENST00000357250 CLIP1P30622 1438 aa16.04■□□□□ 0.16
COL9A1-202ENST00000357250 ANP32AP39687 249 aaKnown RBP16.04■□□□□ 0.16
COL9A1-202ENST00000357250 CHIC2Q9UKJ5 165 aa16.03■□□□□ 0.16
COL9A1-202ENST00000357250 CEP162Q5TB80 1403 aa16.01■□□□□ 0.15
COL9A1-202ENST00000357250 EEA1Q15075 1411 aa16■□□□□ 0.15
COL9A1-202ENST00000357250 SOGA1O94964 1423 aa15.99■□□□□ 0.15
COL9A1-202ENST00000357250 ABCC8Q09428 1581 aa15.93■□□□□ 0.14
COL9A1-202ENST00000357250 CCDC88BA6NC98 1476 aa15.92■□□□□ 0.14
COL9A1-202ENST00000357250 GOLGA3Q08378 1498 aa15.9■□□□□ 0.14
COL9A1-202ENST00000357250 CHMP7Q8WUX9 453 aaPredicted RBP15.9■□□□□ 0.14
COL9A1-202ENST00000357250 WIZO95785 1651 aa15.89■□□□□ 0.13
COL9A1-202ENST00000357250 HIRIP3Q9BW71 556 aaPredicted RBP15.88■□□□□ 0.13
COL9A1-202ENST00000357250 HNRNPUQ00839 825 aaKnown RBP eCLIP15.86■□□□□ 0.13
COL9A1-202ENST00000357250 MTUS2Q5JR59 1369 aa15.85■□□□□ 0.13
COL9A1-202ENST00000357250 FKBP8Q14318 412 aa15.84■□□□□ 0.13
COL9A1-202ENST00000357250 ESF1Q9H501 851 aaKnown RBP15.84■□□□□ 0.13
COL9A1-202ENST00000357250 UPF2Q9HAU5 1272 aaKnown RBP15.84■□□□□ 0.13
COL9A1-202ENST00000357250 TNIKQ9UKE5 1360 aa15.83■□□□□ 0.13
COL9A1-202ENST00000357250 DDX10Q13206 875 aaKnown RBP15.83■□□□□ 0.12
COL9A1-202ENST00000357250 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.83■□□□□ 0.12
COL9A1-202ENST00000357250 TSPY4P0CV99 314 aa15.83■□□□□ 0.12
COL9A1-202ENST00000357250 TSPY10P0CW01 314 aa15.83■□□□□ 0.12
COL9A1-202ENST00000357250 NPM1P06748 294 aaKnown RBP eCLIP15.82■□□□□ 0.12
COL9A1-202ENST00000357250 KIF27Q86VH2 1401 aa15.82■□□□□ 0.12
COL9A1-202ENST00000357250 RRP7BPQ9NSQ0 103 aa15.81■□□□□ 0.12
COL9A1-202ENST00000357250 TMC1Q8TDI8 760 aa15.79■□□□□ 0.12
COL9A1-202ENST00000357250 SLC24A1O60721 1099 aa15.78■□□□□ 0.12
COL9A1-202ENST00000357250 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.78■□□□□ 0.12
COL9A1-202ENST00000357250 ANP32BQ92688 251 aaKnown RBP15.77■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms