RNA–Protein interactions for RNA: ENST00000395358.7

RAPGEF3-202, Transcript of Rap guanine nucleotide exchange factor 3, humanhuman

TSL 2 BASIC

Gene RAPGEF3, Length 4,092 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3-202ENST00000395358 NISCHQ9Y2I1 1504 aa22.37■■□□□ 1.17
RAPGEF3-202ENST00000395358 DCAF8L2P0C7V8 631 aa19.82■□□□□ 0.76
RAPGEF3-202ENST00000395358 PELP1Q8IZL8 1130 aaKnown RBP19.5■□□□□ 0.71
RAPGEF3-202ENST00000395358 CCDC180Q9P1Z9 1646 aa19.3■□□□□ 0.68
RAPGEF3-202ENST00000395358 MYT1Q01538 1121 aa19.13■□□□□ 0.65
RAPGEF3-202ENST00000395358 ABCC9O60706 1549 aa19.05■□□□□ 0.64
RAPGEF3-202ENST00000395358 SHROOM4Q9ULL8 1493 aa18.89■□□□□ 0.61
RAPGEF3-202ENST00000395358 ZCCHC6Q5VYS8 1495 aaKnown RBP18.64■□□□□ 0.57
RAPGEF3-202ENST00000395358 HRCP23327 699 aa18.48■□□□□ 0.55
RAPGEF3-202ENST00000395358 SUPT5HO00267 1087 aaKnown RBP18.38■□□□□ 0.53
RAPGEF3-202ENST00000395358 NACADO15069 1562 aa18.3■□□□□ 0.52
RAPGEF3-202ENST00000395358 RB1CC1Q8TDY2 1594 aa18.29■□□□□ 0.52
RAPGEF3-202ENST00000395358 DCAF1Q9Y4B6 1507 aa18.28■□□□□ 0.52
RAPGEF3-202ENST00000395358 PCGF6Q9BYE7 350 aa18.25■□□□□ 0.51
RAPGEF3-202ENST00000395358 PPARGC1BQ86YN6 1023 aaKnown RBP18.21■□□□□ 0.51
RAPGEF3-202ENST00000395358 PABPN1Q86U42 306 aaKnown RBP eCLIP18.18■□□□□ 0.5
RAPGEF3-202ENST00000395358 SCRIBQ14160 1630 aa18.12■□□□□ 0.49
RAPGEF3-202ENST00000395358 MYO15BQ96JP2 1530 aa18.1■□□□□ 0.49
RAPGEF3-202ENST00000395358 TTBK1Q5TCY1 1321 aaPredicted RBP17.9■□□□□ 0.46
RAPGEF3-202ENST00000395358 SCAF1Q9H7N4 1312 aaKnown RBP17.82■□□□□ 0.44
RAPGEF3-202ENST00000395358 CENPBP07199 599 aaPredicted RBP17.76■□□□□ 0.43
RAPGEF3-202ENST00000395358 ZEB1P37275 1124 aaPredicted RBP17.55■□□□□ 0.4
RAPGEF3-202ENST00000395358 GTF3C3Q9Y5Q9 886 aa17.54■□□□□ 0.4
RAPGEF3-202ENST00000395358 BCL11AQ9H165 835 aa17.44■□□□□ 0.38
RAPGEF3-202ENST00000395358 CECR2Q9BXF3 1484 aa17.44■□□□□ 0.38
RAPGEF3-202ENST00000395358 ACIN1Q9UKV3 1341 aaKnown RBP17.42■□□□□ 0.38
RAPGEF3-202ENST00000395358 ERICH6Q7L0X2 663 aa17.41■□□□□ 0.38
RAPGEF3-202ENST00000395358 BAZ1AQ9NRL2 1556 aaPredicted RBP17.41■□□□□ 0.38
RAPGEF3-202ENST00000395358 RSF1Q96T23 1441 aaPredicted RBP17.4■□□□□ 0.38
RAPGEF3-202ENST00000395358 YTHDC1Q96MU7 727 aaKnown RBP17.29■□□□□ 0.36
RAPGEF3-202ENST00000395358 MROH2BQ7Z745 1585 aa17.26■□□□□ 0.35
RAPGEF3-202ENST00000395358 TRIM41Q8WV44 630 aa17.26■□□□□ 0.35
RAPGEF3-202ENST00000395358 BICRAQ9NZM4 1560 aa17.24■□□□□ 0.35
RAPGEF3-202ENST00000395358 NEUROD1Q13562 356 aa17.24■□□□□ 0.35
RAPGEF3-202ENST00000395358 BAZ1BQ9UIG0 1483 aaKnown RBP17.2■□□□□ 0.34
RAPGEF3-202ENST00000395358 UNC13AQ9UPW8 1703 aa17.19■□□□□ 0.34
RAPGEF3-202ENST00000395358 TRIM26Q12899 539 aaPredicted RBP17.18■□□□□ 0.34
RAPGEF3-202ENST00000395358 PRKCSHP14314 528 aaPredicted RBP17.15■□□□□ 0.34
RAPGEF3-202ENST00000395358 SMARCA4P51532 1647 aa17.14■□□□□ 0.33
RAPGEF3-202ENST00000395358 SMARCA2P51531 1590 aa17.13■□□□□ 0.33
RAPGEF3-202ENST00000395358 FAM9AQ8IZU1 332 aaPredicted RBP17.08■□□□□ 0.32
RAPGEF3-202ENST00000395358 EHMT2Q96KQ7 1210 aa17.07■□□□□ 0.32
RAPGEF3-202ENST00000395358 EIF4G1Q04637 1599 aaKnown RBP17.06■□□□□ 0.32
RAPGEF3-202ENST00000395358 ATAD2BQ9ULI0 1458 aa17.06■□□□□ 0.32
RAPGEF3-202ENST00000395358 CHIC1Q5VXU3 224 aa17.05■□□□□ 0.32
RAPGEF3-202ENST00000395358 WIZO95785 1651 aa17.04■□□□□ 0.32
RAPGEF3-202ENST00000395358 DIEXFQ68CQ4 756 aaKnown RBP16.96■□□□□ 0.31
RAPGEF3-202ENST00000395358 TOP2AP11388 1531 aaKnown RBP16.95■□□□□ 0.3
RAPGEF3-202ENST00000395358 CCER1Q8TC90 406 aaPredicted RBP16.94■□□□□ 0.3
RAPGEF3-202ENST00000395358 ANP32EQ9BTT0 268 aa16.94■□□□□ 0.3
RAPGEF3-202ENST00000395358 NCAPD3P42695 1498 aa16.91■□□□□ 0.3
RAPGEF3-202ENST00000395358 CCDC88BA6NC98 1476 aa16.88■□□□□ 0.29
RAPGEF3-202ENST00000395358 CC2D2AQ9P2K1 1620 aa16.85■□□□□ 0.29
RAPGEF3-202ENST00000395358 LOC105371045A0A1W2PR82 267 aa16.76■□□□□ 0.27
RAPGEF3-202ENST00000395358 HMGXB3Q12766 1538 aa16.74■□□□□ 0.27
RAPGEF3-202ENST00000395358 UBTFP17480 764 aaKnown RBP16.73■□□□□ 0.27
RAPGEF3-202ENST00000395358 CADPSQ9ULU8 1353 aa16.72■□□□□ 0.27
RAPGEF3-202ENST00000395358 DNAJC5BQ9UF47 199 aa16.71■□□□□ 0.27
RAPGEF3-202ENST00000395358 CSRNP3Q8WYN3 585 aa16.7■□□□□ 0.26
RAPGEF3-202ENST00000395358 PEG3Q9GZU2 1588 aa16.69■□□□□ 0.26
RAPGEF3-202ENST00000395358 WRNQ14191 1432 aaPredicted RBP eCLIP16.65■□□□□ 0.26
RAPGEF3-202ENST00000395358 PDS5BQ9NTI5 1447 aa16.65■□□□□ 0.26
RAPGEF3-202ENST00000395358 ERCC6Q03468 1493 aa16.64■□□□□ 0.25
RAPGEF3-202ENST00000395358 RANGAP1P46060 587 aaPredicted RBP16.63■□□□□ 0.25
RAPGEF3-202ENST00000395358 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.59■□□□□ 0.25
RAPGEF3-202ENST00000395358 APLP2Q06481 763 aa16.52■□□□□ 0.24
RAPGEF3-202ENST00000395358 BCANQ96GW7 911 aa16.5■□□□□ 0.23
RAPGEF3-202ENST00000395358 NEFLP07196 543 aa16.5■□□□□ 0.23
RAPGEF3-202ENST00000395358 CFTRP13569 1480 aa16.49■□□□□ 0.23
RAPGEF3-202ENST00000395358 FANCD2Q9BXW9 1451 aa16.49■□□□□ 0.23
RAPGEF3-202ENST00000395358 ABCC8Q09428 1581 aa16.47■□□□□ 0.23
RAPGEF3-202ENST00000395358 CEP164Q9UPV0 1460 aa16.47■□□□□ 0.23
RAPGEF3-202ENST00000395358 FBLN2P98095 1184 aa16.44■□□□□ 0.22
RAPGEF3-202ENST00000395358 NESP48681 1621 aa16.42■□□□□ 0.22
RAPGEF3-202ENST00000395358 EIF5BO60841 1220 aaKnown RBP16.38■□□□□ 0.21
RAPGEF3-202ENST00000395358 ATP1B4Q9UN42 357 aaPredicted RBP16.37■□□□□ 0.21
RAPGEF3-202ENST00000395358 EEA1Q15075 1411 aa16.37■□□□□ 0.21
RAPGEF3-202ENST00000395358 KIF27Q86VH2 1401 aa16.36■□□□□ 0.21
RAPGEF3-202ENST00000395358 LAMC3Q9Y6N6 1575 aa16.34■□□□□ 0.21
RAPGEF3-202ENST00000395358 SOGA1O94964 1423 aa16.32■□□□□ 0.2
RAPGEF3-202ENST00000395358 ZNF316A6NFI3 1004 aaPredicted RBP16.32■□□□□ 0.2
RAPGEF3-202ENST00000395358 CUX2O14529 1486 aa16.3■□□□□ 0.2
RAPGEF3-202ENST00000395358 TSHZ2Q9NRE2 1034 aa16.29■□□□□ 0.2
RAPGEF3-202ENST00000395358 RTL5Q5HYW3 569 aaPredicted RBP16.27■□□□□ 0.2
RAPGEF3-202ENST00000395358 ANO8Q9HCE9 1232 aaPredicted RBP16.27■□□□□ 0.2
RAPGEF3-202ENST00000395358 CLSPNQ9HAW4 1339 aa16.26■□□□□ 0.19
RAPGEF3-202ENST00000395358 CHMP7Q8WUX9 453 aaPredicted RBP16.25■□□□□ 0.19
RAPGEF3-202ENST00000395358 MYT1LQ9UL68 1186 aa16.24■□□□□ 0.19
RAPGEF3-202ENST00000395358 TDRD9Q8NDG6 1382 aaKnown RBP16.22■□□□□ 0.19
RAPGEF3-202ENST00000395358 CCDC136Q96JN2 1154 aa16.22■□□□□ 0.19
RAPGEF3-202ENST00000395358 SUPT16HQ9Y5B9 1047 aaKnown RBP16.22■□□□□ 0.19
RAPGEF3-202ENST00000395358 MIER1Q8N108 512 aa16.21■□□□□ 0.19
RAPGEF3-202ENST00000395358 FGD5Q6ZNL6 1462 aa16.2■□□□□ 0.18
RAPGEF3-202ENST00000395358 MRC2Q9UBG0 1479 aa16.2■□□□□ 0.18
RAPGEF3-202ENST00000395358 TOPBP1Q92547 1522 aa16.15■□□□□ 0.18
RAPGEF3-202ENST00000395358 CARMIL1Q5VZK9 1371 aa16.15■□□□□ 0.18
RAPGEF3-202ENST00000395358 GOLGA3Q08378 1498 aa16.14■□□□□ 0.17
RAPGEF3-202ENST00000395358 SYNJ1O43426 1573 aa16.14■□□□□ 0.17
RAPGEF3-202ENST00000395358 CUX1P39880 1505 aa16.13■□□□□ 0.17
RAPGEF3-202ENST00000395358 HNRNPUL2Q1KMD3 747 aaKnown RBP16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms