RNA–Protein interactions for RNA: ENST00000223129.8

RPA3-201, Transcript of replication protein A3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RPA3, Length 2,020 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3-201ENST00000223129 NISCHQ9Y2I1 1504 aa35.71■■■■□ 3.31
RPA3-201ENST00000223129 CCDC180Q9P1Z9 1646 aa31.51■■■□□ 2.63
RPA3-201ENST00000223129 ABCC9O60706 1549 aa30.61■■■□□ 2.49
RPA3-201ENST00000223129 DCAF8L2P0C7V8 631 aa29.83■■■□□ 2.37
RPA3-201ENST00000223129 ZCCHC6Q5VYS8 1495 aaKnown RBP29.81■■■□□ 2.36
RPA3-201ENST00000223129 NACADO15069 1562 aa29.56■■■□□ 2.32
RPA3-201ENST00000223129 RB1CC1Q8TDY2 1594 aa29.51■■■□□ 2.31
RPA3-201ENST00000223129 DCAF1Q9Y4B6 1507 aa29.49■■■□□ 2.31
RPA3-201ENST00000223129 MYO15BQ96JP2 1530 aa29.46■■■□□ 2.31
RPA3-201ENST00000223129 UNC13AQ9UPW8 1703 aa28.9■■■□□ 2.22
RPA3-201ENST00000223129 SCRIBQ14160 1630 aa28.89■■■□□ 2.21
RPA3-201ENST00000223129 PABPN1Q86U42 306 aaKnown RBP eCLIP28.72■■■□□ 2.19
RPA3-201ENST00000223129 BICRAQ9NZM4 1560 aa28.65■■■□□ 2.18
RPA3-201ENST00000223129 SHROOM4Q9ULL8 1493 aa28.57■■■□□ 2.16
RPA3-201ENST00000223129 EIF4G1Q04637 1599 aaKnown RBP27.86■■■□□ 2.05
RPA3-201ENST00000223129 CECR2Q9BXF3 1484 aa27.84■■■□□ 2.05
RPA3-201ENST00000223129 DNAJC5BQ9UF47 199 aa27.81■■■□□ 2.04
RPA3-201ENST00000223129 CC2D2AQ9P2K1 1620 aa27.67■■■□□ 2.02
RPA3-201ENST00000223129 BAZ1AQ9NRL2 1556 aaPredicted RBP27.63■■■□□ 2.01
RPA3-201ENST00000223129 SMARCA4P51532 1647 aa27.62■■■□□ 2.01
RPA3-201ENST00000223129 MROH2BQ7Z745 1585 aa27.56■■■□□ 2
RPA3-201ENST00000223129 ATAD2BQ9ULI0 1458 aa27.39■■□□□ 1.98
RPA3-201ENST00000223129 RSF1Q96T23 1441 aaPredicted RBP27.38■■□□□ 1.97
RPA3-201ENST00000223129 SMARCA2P51531 1590 aa27.33■■□□□ 1.97
RPA3-201ENST00000223129 PEG3Q9GZU2 1588 aa27.31■■□□□ 1.96
RPA3-201ENST00000223129 WIZO95785 1651 aa27.3■■□□□ 1.96
RPA3-201ENST00000223129 NCAPD3P42695 1498 aa27.29■■□□□ 1.96
RPA3-201ENST00000223129 BAZ1BQ9UIG0 1483 aaKnown RBP27.18■■□□□ 1.94
RPA3-201ENST00000223129 HMGXB3Q12766 1538 aa27.16■■□□□ 1.94
RPA3-201ENST00000223129 SUPT5HO00267 1087 aaKnown RBP27.07■■□□□ 1.92
RPA3-201ENST00000223129 TOP2AP11388 1531 aaKnown RBP26.97■■□□□ 1.91
RPA3-201ENST00000223129 CCDC88BA6NC98 1476 aa26.71■■□□□ 1.87
RPA3-201ENST00000223129 NESP48681 1621 aa26.61■■□□□ 1.85
RPA3-201ENST00000223129 CADPSQ9ULU8 1353 aa26.55■■□□□ 1.84
RPA3-201ENST00000223129 LAMC3Q9Y6N6 1575 aa26.5■■□□□ 1.83
RPA3-201ENST00000223129 CFTRP13569 1480 aa26.45■■□□□ 1.82
RPA3-201ENST00000223129 PDS5BQ9NTI5 1447 aa26.33■■□□□ 1.8
RPA3-201ENST00000223129 ERCC6Q03468 1493 aa26.31■■□□□ 1.8
RPA3-201ENST00000223129 KIF21AQ7Z4S6 1674 aa26.26■■□□□ 1.79
RPA3-201ENST00000223129 PRDM2Q13029 1718 aa26.25■■□□□ 1.79
RPA3-201ENST00000223129 FANCD2Q9BXW9 1451 aa26.24■■□□□ 1.79
RPA3-201ENST00000223129 CEP164Q9UPV0 1460 aa26.16■■□□□ 1.78
RPA3-201ENST00000223129 THOC2Q8NI27 1593 aaKnown RBP26.05■■□□□ 1.76
RPA3-201ENST00000223129 MRC2Q9UBG0 1479 aa26.03■■□□□ 1.76
RPA3-201ENST00000223129 URB2Q14146 1524 aaKnown RBP25.97■■□□□ 1.75
RPA3-201ENST00000223129 WDR62O43379 1518 aa25.93■■□□□ 1.74
RPA3-201ENST00000223129 ABCC8Q09428 1581 aa25.87■■□□□ 1.73
RPA3-201ENST00000223129 TOPBP1Q92547 1522 aa25.87■■□□□ 1.73
RPA3-201ENST00000223129 DNMBPQ6XZF7 1577 aa25.84■■□□□ 1.73
RPA3-201ENST00000223129 CUX2O14529 1486 aa25.84■■□□□ 1.73
RPA3-201ENST00000223129 CUX1P39880 1505 aa25.83■■□□□ 1.72
RPA3-201ENST00000223129 WRNQ14191 1432 aaPredicted RBP eCLIP25.79■■□□□ 1.72
RPA3-201ENST00000223129 SYNJ1O43426 1573 aa25.72■■□□□ 1.71
RPA3-201ENST00000223129 POLA1P09884 1462 aaPredicted RBP25.68■■□□□ 1.7
RPA3-201ENST00000223129 FGD5Q6ZNL6 1462 aa25.68■■□□□ 1.7
RPA3-201ENST00000223129 TOP2BQ02880 1626 aa25.67■■□□□ 1.7
RPA3-201ENST00000223129 BIVM-ERCC5R4GMW8 1640 aa25.65■■□□□ 1.7
RPA3-201ENST00000223129 RAD54L2Q9Y4B4 1467 aa25.61■■□□□ 1.69
RPA3-201ENST00000223129 SOGA1O94964 1423 aa25.59■■□□□ 1.69
RPA3-201ENST00000223129 IFT140Q96RY7 1462 aa25.58■■□□□ 1.69
RPA3-201ENST00000223129 TARBP1Q13395 1621 aaKnown RBP25.55■■□□□ 1.68
RPA3-201ENST00000223129 ZNF608Q9ULD9 1512 aaPredicted RBP25.5■■□□□ 1.67
RPA3-201ENST00000223129 TRIM41Q8WV44 630 aa25.5■■□□□ 1.67
RPA3-201ENST00000223129 CHIC1Q5VXU3 224 aa25.45■■□□□ 1.66
RPA3-201ENST00000223129 TDRD9Q8NDG6 1382 aaKnown RBP25.44■■□□□ 1.66
RPA3-201ENST00000223129 AQRO60306 1485 aaKnown RBP eCLIP25.42■■□□□ 1.667e-7■■□□□ 14.1
RPA3-201ENST00000223129 ABCA10Q8WWZ4 1543 aa25.42■■□□□ 1.66
RPA3-201ENST00000223129 WDR97A6NE52 1622 aa25.41■■□□□ 1.66
RPA3-201ENST00000223129 EIF4G3O43432 1585 aaKnown RBP25.37■■□□□ 1.65
RPA3-201ENST00000223129 GAPVD1Q14C86 1478 aa25.29■■□□□ 1.64
RPA3-201ENST00000223129 ABCA5Q8WWZ7 1642 aa25.28■■□□□ 1.64
RPA3-201ENST00000223129 GRIN2BQ13224 1484 aa25.22■■□□□ 1.63
RPA3-201ENST00000223129 KIF27Q86VH2 1401 aa25.21■■□□□ 1.63
RPA3-201ENST00000223129 PBRM1Q86U86 1689 aa25.2■■□□□ 1.62
RPA3-201ENST00000223129 RUSC2Q8N2Y8 1516 aa25.19■■□□□ 1.62
RPA3-201ENST00000223129 SNAPC4Q5SXM2 1469 aa25.16■■□□□ 1.62
RPA3-201ENST00000223129 ERICH3Q5RHP9 1530 aa25.1■■□□□ 1.61
RPA3-201ENST00000223129 IGF1RP08069 1367 aa25.1■■□□□ 1.61
RPA3-201ENST00000223129 MAGI1Q96QZ7 1491 aaPredicted RBP25.08■■□□□ 1.61
RPA3-201ENST00000223129 FBLN2P98095 1184 aa25.08■■□□□ 1.61
RPA3-201ENST00000223129 FAM9AQ8IZU1 332 aaPredicted RBP25.04■■□□□ 1.6
RPA3-201ENST00000223129 CHMP7Q8WUX9 453 aaPredicted RBP25.02■■□□□ 1.6
RPA3-201ENST00000223129 ADAMTS12P58397 1594 aa25.01■■□□□ 1.59
RPA3-201ENST00000223129 SYNJ2O15056 1496 aa25■■□□□ 1.59
RPA3-201ENST00000223129 CHD1O14646 1710 aa25■■□□□ 1.59
RPA3-201ENST00000223129 FHAD1B1AJZ9 1412 aa24.99■■□□□ 1.59
RPA3-201ENST00000223129 CARMIL1Q5VZK9 1371 aa24.95■■□□□ 1.58
RPA3-201ENST00000223129 CSRNP3Q8WYN3 585 aa24.95■■□□□ 1.58
RPA3-201ENST00000223129 CUL7Q14999 1698 aa24.94■■□□□ 1.58
RPA3-201ENST00000223129 EEA1Q15075 1411 aa24.93■■□□□ 1.58
RPA3-201ENST00000223129 OSCARQ8IYS5 282 aa24.91■■□□□ 1.58
RPA3-201ENST00000223129 GRIN2AQ12879 1464 aa24.9■■□□□ 1.58
RPA3-201ENST00000223129 PRXQ9BXM0 1461 aa24.82■■□□□ 1.56
RPA3-201ENST00000223129 RAPGEF2Q9Y4G8 1499 aa24.82■■□□□ 1.56
RPA3-201ENST00000223129 CEP170Q5SW79 1584 aa24.78■■□□□ 1.56
RPA3-201ENST00000223129 NUP160Q12769 1436 aa24.76■■□□□ 1.55
RPA3-201ENST00000223129 EHMT2Q96KQ7 1210 aa24.74■■□□□ 1.55
RPA3-201ENST00000223129 CLASP1Q7Z460 1538 aa24.7■■□□□ 1.54
RPA3-201ENST00000223129 DNAJC5Q9H3Z4 198 aa24.68■■□□□ 1.54
RPA3-201ENST00000223129 KIF21BO75037 1637 aa24.67■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 80.8 ms