Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC15.13■□□□□ 0.01
BDNFP23560 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
BDNFP23560 NAGK-204ENST00000443872 878 ntTSL 3 BASIC15.13■□□□□ 0.01
BDNFP23560 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC15.13■□□□□ 0.01
BDNFP23560 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC15.13■□□□□ 0.01
BDNFP23560 ALG1L13P-202ENST00000519320 584 ntBASIC15.13■□□□□ 0.01
BDNFP23560 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
BDNFP23560 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC15.13■□□□□ 0.01
BDNFP23560 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC15.13■□□□□ 0.01
BDNFP23560 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC15.13■□□□□ 0.01
BDNFP23560 SKA2-205ENST00000580541 689 ntTSL 3 BASIC15.13■□□□□ 0.01
BDNFP23560 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC15.13■□□□□ 0.01
BDNFP23560 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC15.13■□□□□ 0.01
BDNFP23560 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
BDNFP23560 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
BDNFP23560 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
BDNFP23560 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC15.13■□□□□ 0.01
BDNFP23560 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
BDNFP23560 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
BDNFP23560 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
BDNFP23560 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
BDNFP23560 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
BDNFP23560 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC15.13■□□□□ 0.01
BDNFP23560 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
BDNFP23560 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
BDNFP23560 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
BDNFP23560 ZDHHC8-203ENST00000405930 3112 ntTSL 2 BASIC15.12■□□□□ 0.01
BDNFP23560 ITGB2-208ENST00000397857 2813 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
BDNFP23560 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
BDNFP23560 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC15.12■□□□□ 0.01
BDNFP23560 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
BDNFP23560 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
BDNFP23560 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
BDNFP23560 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
BDNFP23560 RGS12-202ENST00000338806 3010 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
BDNFP23560 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
BDNFP23560 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
BDNFP23560 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
BDNFP23560 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
BDNFP23560 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
BDNFP23560 KRT8P31-201ENST00000504812 1408 ntBASIC15.12■□□□□ 0.01
BDNFP23560 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
BDNFP23560 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
BDNFP23560 PPCDC-201ENST00000342932 2250 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
BDNFP23560 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
BDNFP23560 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
BDNFP23560 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
BDNFP23560 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC15.12■□□□□ 0.01
BDNFP23560 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
BDNFP23560 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
BDNFP23560 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
BDNFP23560 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
BDNFP23560 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC15.12■□□□□ 0.01
BDNFP23560 DUTP3-201ENST00000450025 415 ntBASIC15.12■□□□□ 0.01
BDNFP23560 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC15.12■□□□□ 0.01
BDNFP23560 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
BDNFP23560 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC15.12■□□□□ 0.01
BDNFP23560 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC15.12■□□□□ 0.01
BDNFP23560 MAX-218ENST00000557746 571 ntTSL 4 BASIC15.12■□□□□ 0.01
BDNFP23560 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC15.12■□□□□ 0.01
BDNFP23560 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
BDNFP23560 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC15.12■□□□□ 0.01
BDNFP23560 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
BDNFP23560 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC15.12■□□□□ 0.01
BDNFP23560 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC15.12■□□□□ 0.01
BDNFP23560 AL353726.2-201ENST00000623259 884 ntBASIC15.12■□□□□ 0.01
BDNFP23560 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
BDNFP23560 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
BDNFP23560 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC15.12■□□□□ 0.01
BDNFP23560 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC15.12■□□□□ 0.01
BDNFP23560 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
BDNFP23560 LINC00115-201ENST00000473798 1317 ntBASIC15.12■□□□□ 0.01
BDNFP23560 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC15.12■□□□□ 0.01
BDNFP23560 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
BDNFP23560 ABR-205ENST00000544583 5595 ntTSL 2 BASIC15.12■□□□□ 0.01
BDNFP23560 ACKR3-201ENST00000272928 2203 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
BDNFP23560 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
BDNFP23560 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
BDNFP23560 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC15.12■□□□□ 0.01
BDNFP23560 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC15.12■□□□□ 0.01
BDNFP23560 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
BDNFP23560 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
BDNFP23560 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
BDNFP23560 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
BDNFP23560 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
BDNFP23560 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
BDNFP23560 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
BDNFP23560 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
BDNFP23560 GOLGA8DP-202ENST00000341390 2184 ntBASIC15.11■□□□□ 0.01
BDNFP23560 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
BDNFP23560 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
BDNFP23560 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
BDNFP23560 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
BDNFP23560 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
BDNFP23560 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC15.11■□□□□ 0.01
BDNFP23560 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
BDNFP23560 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
BDNFP23560 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
BDNFP23560 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
BDNFP23560 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 74.7 ms