Protein–RNA interactions for Protein: Q07699

SCN1B, Sodium channel subunit beta-1, humanhuman

Predictions only

Length 218 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1BQ07699 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
SCN1BQ07699 AC244197.3-201ENST00000422081 2635 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
SCN1BQ07699 GPA33-201ENST00000367868 2802 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
SCN1BQ07699 ARAP1-204ENST00000393609 5145 ntAPPRIS ALT2 TSL 2 BASIC12.94□□□□□ -0.34
SCN1BQ07699 ZBP1-201ENST00000371173 2195 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
SCN1BQ07699 DYSF-202ENST00000394120 6543 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
SCN1BQ07699 GOLGA2P5-201ENST00000266746 2395 ntBASIC12.94□□□□□ -0.34
SCN1BQ07699 MGAT1-205ENST00000446023 3175 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
SCN1BQ07699 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC12.94□□□□□ -0.34
SCN1BQ07699 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC12.94□□□□□ -0.34
SCN1BQ07699 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
SCN1BQ07699 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC12.94□□□□□ -0.34
SCN1BQ07699 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
SCN1BQ07699 ASB2-201ENST00000315988 2743 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
SCN1BQ07699 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
SCN1BQ07699 AC239798.2-201ENST00000415338 3540 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
SCN1BQ07699 AP001999.1-201ENST00000513405 3684 ntTSL 2 BASIC12.94□□□□□ -0.34
SCN1BQ07699 NADK-202ENST00000341991 3098 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
SCN1BQ07699 AL157996.1-201ENST00000624684 2299 ntBASIC12.94□□□□□ -0.34
SCN1BQ07699 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC12.94□□□□□ -0.34
SCN1BQ07699 CACNA1C-214ENST00000399634 7590 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
SCN1BQ07699 CACNA1C-222ENST00000406454 7590 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
SCN1BQ07699 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC12.94□□□□□ -0.34
SCN1BQ07699 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
SCN1BQ07699 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC12.94□□□□□ -0.34
SCN1BQ07699 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC12.94□□□□□ -0.34
SCN1BQ07699 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC12.94□□□□□ -0.34
SCN1BQ07699 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
SCN1BQ07699 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC12.94□□□□□ -0.34
SCN1BQ07699 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC12.94□□□□□ -0.34
SCN1BQ07699 AC114501.2-201ENST00000439631 535 ntBASIC12.94□□□□□ -0.34
SCN1BQ07699 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC12.94□□□□□ -0.34
SCN1BQ07699 AC009407.1-201ENST00000568958 598 ntBASIC12.94□□□□□ -0.34
SCN1BQ07699 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC12.94□□□□□ -0.34
SCN1BQ07699 GPX4-206ENST00000588919 803 ntTSL 2 BASIC12.94□□□□□ -0.34
SCN1BQ07699 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC12.94□□□□□ -0.34
SCN1BQ07699 SLC29A4-201ENST00000297195 2839 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
SCN1BQ07699 STRA6-202ENST00000395105 2800 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
SCN1BQ07699 PER3-208ENST00000613533 6318 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
SCN1BQ07699 TMC5-204ENST00000541464 3581 ntTSL 2 BASIC12.94□□□□□ -0.34
SCN1BQ07699 FAM187A-201ENST00000331733 3397 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
SCN1BQ07699 CCDC103-204ENST00000417826 3397 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
SCN1BQ07699 LRCH3-203ENST00000425562 2970 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
SCN1BQ07699 TMEM229B-207ENST00000557006 3941 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
SCN1BQ07699 TRIB2-202ENST00000381465 2778 ntTSL 2 BASIC12.94□□□□□ -0.34
SCN1BQ07699 EPN2-202ENST00000347697 4664 ntAPPRIS ALT1 TSL 5 BASIC12.94□□□□□ -0.34
SCN1BQ07699 CCND3-215ENST00000511642 2394 ntTSL 2 BASIC12.94□□□□□ -0.34
SCN1BQ07699 KLHL13-209ENST00000545703 3322 ntAPPRIS ALT1 TSL 1 (best) BASIC12.94□□□□□ -0.34
SCN1BQ07699 PDHA1-212ENST00000540249 3277 ntTSL 2 BASIC12.94□□□□□ -0.34
SCN1BQ07699 AMIGO3-201ENST00000320431 2862 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
SCN1BQ07699 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC12.94□□□□□ -0.34
SCN1BQ07699 EXOC3-201ENST00000315013 2682 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
SCN1BQ07699 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC12.94□□□□□ -0.34
SCN1BQ07699 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
SCN1BQ07699 PHLDB1-201ENST00000356063 5240 ntAPPRIS ALT2 TSL 2 BASIC12.94□□□□□ -0.34
SCN1BQ07699 MYO9B-204ENST00000594824 7595 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
SCN1BQ07699 EGR2-202ENST00000411732 2824 ntTSL 2 BASIC12.94□□□□□ -0.34
SCN1BQ07699 PRR12-201ENST00000418929 6955 ntAPPRIS P2 TSL 5 BASIC12.93□□□□□ -0.34
SCN1BQ07699 RAB37-204ENST00000392613 2617 ntAPPRIS ALT1 TSL 2 BASIC12.93□□□□□ -0.34
SCN1BQ07699 NGLY1-205ENST00000417874 2062 ntTSL 2 BASIC12.93□□□□□ -0.34
SCN1BQ07699 PTPRH-202ENST00000376350 3877 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
SCN1BQ07699 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
SCN1BQ07699 SERBP1-204ENST00000370995 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
SCN1BQ07699 AC107375.1-201ENST00000564464 2231 ntBASIC12.93□□□□□ -0.34
SCN1BQ07699 KIF21B-204ENST00000461742 5428 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
SCN1BQ07699 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
SCN1BQ07699 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC12.93□□□□□ -0.34
SCN1BQ07699 DUOXA1-205ENST00000558422 1678 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
SCN1BQ07699 SLC5A4-201ENST00000266086 2030 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
SCN1BQ07699 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
SCN1BQ07699 NIN-206ENST00000453196 6785 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
SCN1BQ07699 AL805961.2-201ENST00000642139 4817 ntBASIC12.93□□□□□ -0.34
SCN1BQ07699 TRAF6-202ENST00000526995 4627 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
SCN1BQ07699 PGAP2-202ENST00000300730 1843 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
SCN1BQ07699 SLC26A6-202ENST00000337000 2317 ntTSL 2 BASIC12.93□□□□□ -0.34
SCN1BQ07699 PRKAR2A-202ENST00000296446 3318 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
SCN1BQ07699 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
SCN1BQ07699 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
SCN1BQ07699 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC12.93□□□□□ -0.34
SCN1BQ07699 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
SCN1BQ07699 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
SCN1BQ07699 PNMT-202ENST00000394246 821 ntTSL 2 BASIC12.93□□□□□ -0.34
SCN1BQ07699 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC12.93□□□□□ -0.34
SCN1BQ07699 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC12.93□□□□□ -0.34
SCN1BQ07699 AL589987.1-201ENST00000453380 819 ntBASIC12.93□□□□□ -0.34
SCN1BQ07699 AC093214.1-201ENST00000511688 1107 ntBASIC12.93□□□□□ -0.34
SCN1BQ07699 SAMD11P1-201ENST00000571429 661 ntBASIC12.93□□□□□ -0.34
SCN1BQ07699 PRR29-204ENST00000577953 565 ntTSL 4 BASIC12.93□□□□□ -0.34
SCN1BQ07699 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
SCN1BQ07699 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC12.93□□□□□ -0.34
SCN1BQ07699 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
SCN1BQ07699 MTSS1-201ENST00000325064 2777 ntTSL 2 BASIC12.93□□□□□ -0.34
SCN1BQ07699 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC12.93□□□□□ -0.34
SCN1BQ07699 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
SCN1BQ07699 UQCRB-201ENST00000287022 5575 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
SCN1BQ07699 ANKZF1-201ENST00000323348 2579 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
SCN1BQ07699 ANKS1B-208ENST00000547010 2595 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
SCN1BQ07699 TBC1D3E-201ENST00000621587 2076 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
SCN1BQ07699 GSN-209ENST00000449733 2702 ntTSL 2 BASIC12.93□□□□□ -0.34
SCN1BQ07699 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms