RNA–Protein interactions for RNA: ENST00000425562.6

LRCH3-203, Transcript of leucine rich repeats and calponin homology domain containing 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LRCH3, Length 2,970 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3-203ENST00000425562 NISCHQ9Y2I1 1504 aa26.73■■□□□ 1.87
LRCH3-203ENST00000425562 SHROOM4Q9ULL8 1493 aa23.46■■□□□ 1.35
LRCH3-203ENST00000425562 SUPT5HO00267 1087 aaKnown RBP23.08■■□□□ 1.29
LRCH3-203ENST00000425562 DCAF8L2P0C7V8 631 aa22.83■■□□□ 1.24
LRCH3-203ENST00000425562 HRCP23327 699 aa22.64■■□□□ 1.22
LRCH3-203ENST00000425562 PPARGC1BQ86YN6 1023 aaKnown RBP22.63■■□□□ 1.21
LRCH3-203ENST00000425562 PCGF6Q9BYE7 350 aa22.62■■□□□ 1.21
LRCH3-203ENST00000425562 ZCCHC6Q5VYS8 1495 aaKnown RBP22.58■■□□□ 1.21
LRCH3-203ENST00000425562 CCDC180Q9P1Z9 1646 aa22.44■■□□□ 1.18
LRCH3-203ENST00000425562 MYO15BQ96JP2 1530 aa22.38■■□□□ 1.17
LRCH3-203ENST00000425562 CHIC1Q5VXU3 224 aa22.29■■□□□ 1.16
LRCH3-203ENST00000425562 LOC105371045A0A1W2PR82 267 aa22.07■■□□□ 1.12
LRCH3-203ENST00000425562 EHMT2Q96KQ7 1210 aa21.68■■□□□ 1.06
LRCH3-203ENST00000425562 DCAF1Q9Y4B6 1507 aa21.64■■□□□ 1.06
LRCH3-203ENST00000425562 TRIM26Q12899 539 aaPredicted RBP21.58■■□□□ 1.05
LRCH3-203ENST00000425562 SCRIBQ14160 1630 aa21.49■■□□□ 1.03
LRCH3-203ENST00000425562 SCAF1Q9H7N4 1312 aaKnown RBP21.48■■□□□ 1.03
LRCH3-203ENST00000425562 FAM9AQ8IZU1 332 aaPredicted RBP21.48■■□□□ 1.03
LRCH3-203ENST00000425562 ABCC9O60706 1549 aa21.32■■□□□ 1
LRCH3-203ENST00000425562 RSF1Q96T23 1441 aaPredicted RBP21.3■■□□□ 1
LRCH3-203ENST00000425562 TRIM41Q8WV44 630 aa21.25■□□□□ 0.99
LRCH3-203ENST00000425562 PELP1Q8IZL8 1130 aaKnown RBP21.25■□□□□ 0.99
LRCH3-203ENST00000425562 RB1CC1Q8TDY2 1594 aa21.16■□□□□ 0.98
LRCH3-203ENST00000425562 ZEB1P37275 1124 aaPredicted RBP21.15■□□□□ 0.98
LRCH3-203ENST00000425562 CECR2Q9BXF3 1484 aa21.07■□□□□ 0.96
LRCH3-203ENST00000425562 TTBK1Q5TCY1 1321 aaPredicted RBP21.06■□□□□ 0.96
LRCH3-203ENST00000425562 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.05■□□□□ 0.96
LRCH3-203ENST00000425562 NEUROD1Q13562 356 aa21.01■□□□□ 0.95
LRCH3-203ENST00000425562 MROH2BQ7Z745 1585 aa20.93■□□□□ 0.94
LRCH3-203ENST00000425562 CCER1Q8TC90 406 aaPredicted RBP20.91■□□□□ 0.94
LRCH3-203ENST00000425562 GTF3C3Q9Y5Q9 886 aa20.9■□□□□ 0.94
LRCH3-203ENST00000425562 ACIN1Q9UKV3 1341 aaKnown RBP20.89■□□□□ 0.93
LRCH3-203ENST00000425562 WIZO95785 1651 aa20.85■□□□□ 0.93
LRCH3-203ENST00000425562 NACADO15069 1562 aa20.81■□□□□ 0.92
LRCH3-203ENST00000425562 YTHDC1Q96MU7 727 aaKnown RBP20.75■□□□□ 0.91
LRCH3-203ENST00000425562 DIEXFQ68CQ4 756 aaKnown RBP20.73■□□□□ 0.91
LRCH3-203ENST00000425562 CENPBP07199 599 aaPredicted RBP20.62■□□□□ 0.89
LRCH3-203ENST00000425562 PABPN1Q86U42 306 aaKnown RBP eCLIP20.53■□□□□ 0.88
LRCH3-203ENST00000425562 ABCC8Q09428 1581 aa20.52■□□□□ 0.88
LRCH3-203ENST00000425562 BAZ1AQ9NRL2 1556 aaPredicted RBP20.51■□□□□ 0.87
LRCH3-203ENST00000425562 CCDC88BA6NC98 1476 aa20.43■□□□□ 0.86
LRCH3-203ENST00000425562 EIF4G1Q04637 1599 aaKnown RBP20.35■□□□□ 0.85
LRCH3-203ENST00000425562 SOGA1O94964 1423 aa20.35■□□□□ 0.85
LRCH3-203ENST00000425562 SMARCA4P51532 1647 aa20.34■□□□□ 0.85
LRCH3-203ENST00000425562 TOP2AP11388 1531 aaKnown RBP20.32■□□□□ 0.84
LRCH3-203ENST00000425562 UBTFP17480 764 aaKnown RBP20.32■□□□□ 0.84
LRCH3-203ENST00000425562 UNC13AQ9UPW8 1703 aa20.31■□□□□ 0.84
LRCH3-203ENST00000425562 MIER1Q8N108 512 aa20.29■□□□□ 0.84
LRCH3-203ENST00000425562 SMARCA2P51531 1590 aa20.29■□□□□ 0.84
LRCH3-203ENST00000425562 RUSC2Q8N2Y8 1516 aa20.28■□□□□ 0.84
LRCH3-203ENST00000425562 ZNF316A6NFI3 1004 aaPredicted RBP20.27■□□□□ 0.83
LRCH3-203ENST00000425562 HNRNPUL2Q1KMD3 747 aaKnown RBP20.25■□□□□ 0.83
LRCH3-203ENST00000425562 RANGAP1P46060 587 aaPredicted RBP20.22■□□□□ 0.83
LRCH3-203ENST00000425562 CEP162Q5TB80 1403 aa20.21■□□□□ 0.83
LRCH3-203ENST00000425562 MYT1Q01538 1121 aa20.2■□□□□ 0.82
LRCH3-203ENST00000425562 CSRNP3Q8WYN3 585 aa20.19■□□□□ 0.82
LRCH3-203ENST00000425562 TNIKQ9UKE5 1360 aa20.05■□□□□ 0.8
LRCH3-203ENST00000425562 BICRAQ9NZM4 1560 aa20.04■□□□□ 0.8
LRCH3-203ENST00000425562 WRNQ14191 1432 aaPredicted RBP eCLIP20.02■□□□□ 0.79
LRCH3-203ENST00000425562 GOLGA3Q08378 1498 aa19.93■□□□□ 0.78
LRCH3-203ENST00000425562 SYNJ1O43426 1573 aa19.92■□□□□ 0.78
LRCH3-203ENST00000425562 EEA1Q15075 1411 aa19.89■□□□□ 0.77
LRCH3-203ENST00000425562 BAZ1BQ9UIG0 1483 aaKnown RBP19.84■□□□□ 0.77
LRCH3-203ENST00000425562 ATAD2BQ9ULI0 1458 aa19.84■□□□□ 0.77
LRCH3-203ENST00000425562 CLIP1P30622 1438 aa19.81■□□□□ 0.76
LRCH3-203ENST00000425562 BCANQ96GW7 911 aa19.8■□□□□ 0.76
LRCH3-203ENST00000425562 SUPT16HQ9Y5B9 1047 aaKnown RBP19.8■□□□□ 0.76
LRCH3-203ENST00000425562 APLP2Q06481 763 aa19.79■□□□□ 0.76
LRCH3-203ENST00000425562 RAPGEF2Q9Y4G8 1499 aa19.79■□□□□ 0.76
LRCH3-203ENST00000425562 CEP164Q9UPV0 1460 aa19.78■□□□□ 0.76
LRCH3-203ENST00000425562 PEG3Q9GZU2 1588 aa19.74■□□□□ 0.75
LRCH3-203ENST00000425562 KCNH8Q96L42 1107 aa19.69■□□□□ 0.74
LRCH3-203ENST00000425562 TSHZ2Q9NRE2 1034 aa19.67■□□□□ 0.74
LRCH3-203ENST00000425562 KIF21BO75037 1637 aa19.65■□□□□ 0.74
LRCH3-203ENST00000425562 VPS8Q8N3P4 1428 aa19.65■□□□□ 0.74
LRCH3-203ENST00000425562 ITGAEP38570 1179 aa19.64■□□□□ 0.73
LRCH3-203ENST00000425562 KANK4Q5T7N3 995 aaPredicted RBP19.57■□□□□ 0.72
LRCH3-203ENST00000425562 ANP32EQ9BTT0 268 aa19.53■□□□□ 0.72
LRCH3-203ENST00000425562 TOP2BQ02880 1626 aa19.52■□□□□ 0.72
LRCH3-203ENST00000425562 BCL11AQ9H165 835 aa19.48■□□□□ 0.71
LRCH3-203ENST00000425562 FKBP8Q14318 412 aa19.47■□□□□ 0.71
LRCH3-203ENST00000425562 CUX1P39880 1505 aa19.44■□□□□ 0.7
LRCH3-203ENST00000425562 HIRIP3Q9BW71 556 aaPredicted RBP19.44■□□□□ 0.7
LRCH3-203ENST00000425562 ARAP1Q96P48 1450 aa19.43■□□□□ 0.7
LRCH3-203ENST00000425562 DHX57Q6P158 1386 aaKnown RBP19.41■□□□□ 0.7
LRCH3-203ENST00000425562 PRXQ9BXM0 1461 aa19.4■□□□□ 0.7
LRCH3-203ENST00000425562 BIVM-ERCC5R4GMW8 1640 aa19.39■□□□□ 0.69
LRCH3-203ENST00000425562 DDX10Q13206 875 aaKnown RBP19.37■□□□□ 0.69
LRCH3-203ENST00000425562 TRIM52Q96A61 297 aa19.36■□□□□ 0.69
LRCH3-203ENST00000425562 KIF27Q86VH2 1401 aa19.36■□□□□ 0.69
LRCH3-203ENST00000425562 P3H3Q8IVL6 736 aa19.34■□□□□ 0.69
LRCH3-203ENST00000425562 ATP1B4Q9UN42 357 aaPredicted RBP19.34■□□□□ 0.69
LRCH3-203ENST00000425562 NCAPD3P42695 1498 aa19.33■□□□□ 0.69
LRCH3-203ENST00000425562 ERICH3Q5RHP9 1530 aa19.3■□□□□ 0.68
LRCH3-203ENST00000425562 CUX2O14529 1486 aa19.26■□□□□ 0.67
LRCH3-203ENST00000425562 CLSPNQ9HAW4 1339 aa19.26■□□□□ 0.67
LRCH3-203ENST00000425562 ARHGAP35Q9NRY4 1499 aa19.26■□□□□ 0.67
LRCH3-203ENST00000425562 CFTRP13569 1480 aa19.25■□□□□ 0.67
LRCH3-203ENST00000425562 HMGXB3Q12766 1538 aa19.25■□□□□ 0.67
LRCH3-203ENST00000425562 RBM19Q9Y4C8 960 aaKnown RBP19.25■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms