Protein–RNA interactions for Protein: P56159

GFRA1, GDNF family receptor alpha-1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA1P56159 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
GFRA1P56159 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC12.86□□□□□ -0.35
GFRA1P56159 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
GFRA1P56159 KRT18P15-201ENST00000458108 1291 ntBASIC12.86□□□□□ -0.35
GFRA1P56159 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC12.86□□□□□ -0.35
GFRA1P56159 ELP5-212ENST00000574255 671 ntTSL 2 BASIC12.86□□□□□ -0.35
GFRA1P56159 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC12.86□□□□□ -0.35
GFRA1P56159 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC12.86□□□□□ -0.35
GFRA1P56159 AC016629.1-201ENST00000596579 586 ntBASIC12.86□□□□□ -0.35
GFRA1P56159 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
GFRA1P56159 AC007718.1-201ENST00000621078 280 ntBASIC12.86□□□□□ -0.35
GFRA1P56159 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC12.86□□□□□ -0.35
GFRA1P56159 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC12.86□□□□□ -0.35
GFRA1P56159 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC12.86□□□□□ -0.35
GFRA1P56159 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
GFRA1P56159 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
GFRA1P56159 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
GFRA1P56159 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC12.86□□□□□ -0.35
GFRA1P56159 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
GFRA1P56159 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
GFRA1P56159 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
GFRA1P56159 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
GFRA1P56159 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC12.86□□□□□ -0.35
GFRA1P56159 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC12.86□□□□□ -0.35
GFRA1P56159 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC12.86□□□□□ -0.35
GFRA1P56159 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC12.86□□□□□ -0.35
GFRA1P56159 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC12.86□□□□□ -0.35
GFRA1P56159 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
GFRA1P56159 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
GFRA1P56159 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC12.86□□□□□ -0.35
GFRA1P56159 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
GFRA1P56159 SHMT1P1-201ENST00000419974 1312 ntBASIC12.86□□□□□ -0.35
GFRA1P56159 LINC00115-201ENST00000473798 1317 ntBASIC12.86□□□□□ -0.35
GFRA1P56159 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
GFRA1P56159 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
GFRA1P56159 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
GFRA1P56159 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
GFRA1P56159 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC12.86□□□□□ -0.35
GFRA1P56159 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
GFRA1P56159 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
GFRA1P56159 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC12.85□□□□□ -0.35
GFRA1P56159 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC12.85□□□□□ -0.35
GFRA1P56159 MARK2P16-201ENST00000605714 1723 ntBASIC12.85□□□□□ -0.35
GFRA1P56159 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC12.85□□□□□ -0.35
GFRA1P56159 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
GFRA1P56159 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC12.85□□□□□ -0.35
GFRA1P56159 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
GFRA1P56159 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
GFRA1P56159 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
GFRA1P56159 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
GFRA1P56159 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
GFRA1P56159 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
GFRA1P56159 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC12.85□□□□□ -0.35
GFRA1P56159 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC12.85□□□□□ -0.35
GFRA1P56159 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC12.85□□□□□ -0.35
GFRA1P56159 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
GFRA1P56159 BAX-205ENST00000391871 687 ntTSL 5 BASIC12.85□□□□□ -0.35
GFRA1P56159 AL627231.1-201ENST00000394467 1125 ntBASIC12.85□□□□□ -0.35
GFRA1P56159 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC12.85□□□□□ -0.35
GFRA1P56159 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC12.85□□□□□ -0.35
GFRA1P56159 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC12.85□□□□□ -0.35
GFRA1P56159 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC12.85□□□□□ -0.35
GFRA1P56159 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC12.85□□□□□ -0.35
GFRA1P56159 AC019193.1-201ENST00000506678 823 ntBASIC12.85□□□□□ -0.35
GFRA1P56159 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC12.85□□□□□ -0.35
GFRA1P56159 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC12.85□□□□□ -0.35
GFRA1P56159 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC12.85□□□□□ -0.35
GFRA1P56159 PRKXP1-201ENST00000561423 1122 ntBASIC12.85□□□□□ -0.35
GFRA1P56159 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
GFRA1P56159 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
GFRA1P56159 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC12.85□□□□□ -0.35
GFRA1P56159 SIGLEC18P-201ENST00000602271 909 ntBASIC12.85□□□□□ -0.35
GFRA1P56159 AC084346.2-201ENST00000607097 949 ntBASIC12.85□□□□□ -0.35
GFRA1P56159 AC009560.1-201ENST00000620208 434 ntBASIC12.85□□□□□ -0.35
GFRA1P56159 AC051619.9-201ENST00000623237 597 ntBASIC12.85□□□□□ -0.35
GFRA1P56159 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC12.85□□□□□ -0.35
GFRA1P56159 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC12.85□□□□□ -0.35
GFRA1P56159 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
GFRA1P56159 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
GFRA1P56159 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
GFRA1P56159 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC12.85□□□□□ -0.35
GFRA1P56159 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
GFRA1P56159 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC12.85□□□□□ -0.35
GFRA1P56159 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
GFRA1P56159 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
GFRA1P56159 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC12.85□□□□□ -0.35
GFRA1P56159 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
GFRA1P56159 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC12.85□□□□□ -0.35
GFRA1P56159 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC12.85□□□□□ -0.35
GFRA1P56159 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC12.85□□□□□ -0.35
GFRA1P56159 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
GFRA1P56159 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
GFRA1P56159 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
GFRA1P56159 AC007191.1-201ENST00000623179 2995 ntBASIC12.84□□□□□ -0.35
GFRA1P56159 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
GFRA1P56159 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
GFRA1P56159 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
GFRA1P56159 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC12.84□□□□□ -0.35
GFRA1P56159 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
GFRA1P56159 EFHC1-230ENST00000637263 2089 ntTSL 5 BASIC12.84□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms