RNA–Protein interactions for RNA: ENST00000381575.6

SHOX-202, Transcript of short stature homeobox, humanhuman

TSL 1 (best) BASIC

Gene SHOX, Length 1,351 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-202ENST00000381575 NISCHQ9Y2I1 1504 aa35.34■■■■□ 3.25
SHOX-202ENST00000381575 CCDC180Q9P1Z9 1646 aa31.67■■■□□ 2.66
SHOX-202ENST00000381575 ABCC9O60706 1549 aa31.59■■■□□ 2.65
SHOX-202ENST00000381575 RB1CC1Q8TDY2 1594 aa30.06■■■□□ 2.4
SHOX-202ENST00000381575 NACADO15069 1562 aa29.85■■■□□ 2.37
SHOX-202ENST00000381575 DCAF8L2P0C7V8 631 aa29.82■■■□□ 2.36
SHOX-202ENST00000381575 UNC13AQ9UPW8 1703 aa29.54■■■□□ 2.32
SHOX-202ENST00000381575 DNAJC5BQ9UF47 199 aa29.48■■■□□ 2.31
SHOX-202ENST00000381575 PABPN1Q86U42 306 aaKnown RBP eCLIP29.42■■■□□ 2.3
SHOX-202ENST00000381575 MYO15BQ96JP2 1530 aa29.41■■■□□ 2.3
SHOX-202ENST00000381575 ZCCHC6Q5VYS8 1495 aaKnown RBP29.34■■■□□ 2.29
SHOX-202ENST00000381575 BICRAQ9NZM4 1560 aa29.23■■■□□ 2.27
SHOX-202ENST00000381575 DCAF1Q9Y4B6 1507 aa29.13■■■□□ 2.25
SHOX-202ENST00000381575 SCRIBQ14160 1630 aa28.96■■■□□ 2.23
SHOX-202ENST00000381575 SHROOM4Q9ULL8 1493 aa28.7■■■□□ 2.18
SHOX-202ENST00000381575 CC2D2AQ9P2K1 1620 aa28.53■■■□□ 2.16
SHOX-202ENST00000381575 EIF4G1Q04637 1599 aaKnown RBP28.48■■■□□ 2.15
SHOX-202ENST00000381575 CECR2Q9BXF3 1484 aa28.39■■■□□ 2.14
SHOX-202ENST00000381575 SMARCA4P51532 1647 aa27.59■■■□□ 2.01
SHOX-202ENST00000381575 NCAPD3P42695 1498 aa27.53■■■□□ 2
SHOX-202ENST00000381575 ATAD2BQ9ULI0 1458 aa27.52■■■□□ 2
SHOX-202ENST00000381575 SMARCA2P51531 1590 aa27.44■■□□□ 1.98
SHOX-202ENST00000381575 BAZ1AQ9NRL2 1556 aaPredicted RBP27.41■■□□□ 1.98
SHOX-202ENST00000381575 HMGXB3Q12766 1538 aa27.39■■□□□ 1.98
SHOX-202ENST00000381575 MROH2BQ7Z745 1585 aa27.29■■□□□ 1.96
SHOX-202ENST00000381575 BAZ1BQ9UIG0 1483 aaKnown RBP27.28■■□□□ 1.96
SHOX-202ENST00000381575 PEG3Q9GZU2 1588 aa27.24■■□□□ 1.95
SHOX-202ENST00000381575 ERCC6Q03468 1493 aa27.23■■□□□ 1.95
SHOX-202ENST00000381575 NESP48681 1621 aa27.2■■□□□ 1.94
SHOX-202ENST00000381575 CUX2O14529 1486 aa27.06■■□□□ 1.92
SHOX-202ENST00000381575 WIZO95785 1651 aa27.02■■□□□ 1.92
SHOX-202ENST00000381575 LAMC3Q9Y6N6 1575 aa26.93■■□□□ 1.9
SHOX-202ENST00000381575 KIF21AQ7Z4S6 1674 aa26.89■■□□□ 1.9
SHOX-202ENST00000381575 THOC2Q8NI27 1593 aaKnown RBP26.87■■□□□ 1.89
SHOX-202ENST00000381575 DNAJC5Q9H3Z4 198 aa26.86■■□□□ 1.89
SHOX-202ENST00000381575 PDS5BQ9NTI5 1447 aa26.74■■□□□ 1.87
SHOX-202ENST00000381575 RSF1Q96T23 1441 aaPredicted RBP26.73■■□□□ 1.87
SHOX-202ENST00000381575 CADPSQ9ULU8 1353 aa26.72■■□□□ 1.87
SHOX-202ENST00000381575 TOP2AP11388 1531 aaKnown RBP26.61■■□□□ 1.85
SHOX-202ENST00000381575 MRC2Q9UBG0 1479 aa26.56■■□□□ 1.84
SHOX-202ENST00000381575 WDR62O43379 1518 aa26.48■■□□□ 1.83
SHOX-202ENST00000381575 CEP164Q9UPV0 1460 aa26.48■■□□□ 1.83
SHOX-202ENST00000381575 FANCD2Q9BXW9 1451 aa26.47■■□□□ 1.83
SHOX-202ENST00000381575 CFTRP13569 1480 aa26.46■■□□□ 1.83
SHOX-202ENST00000381575 PRDM2Q13029 1718 aa26.34■■□□□ 1.81
SHOX-202ENST00000381575 CCDC88BA6NC98 1476 aa26.31■■□□□ 1.8
SHOX-202ENST00000381575 URB2Q14146 1524 aaKnown RBP26.27■■□□□ 1.8
SHOX-202ENST00000381575 TOPBP1Q92547 1522 aa26■■□□□ 1.75
SHOX-202ENST00000381575 ZNF608Q9ULD9 1512 aaPredicted RBP25.94■■□□□ 1.74
SHOX-202ENST00000381575 IFT140Q96RY7 1462 aa25.91■■□□□ 1.74
SHOX-202ENST00000381575 DNMBPQ6XZF7 1577 aa25.91■■□□□ 1.74
SHOX-202ENST00000381575 TRIM41Q8WV44 630 aa25.87■■□□□ 1.73
SHOX-202ENST00000381575 ABCC8Q09428 1581 aa25.84■■□□□ 1.73
SHOX-202ENST00000381575 OSCARQ8IYS5 282 aa25.82■■□□□ 1.72
SHOX-202ENST00000381575 EIF4G3O43432 1585 aaKnown RBP25.82■■□□□ 1.72
SHOX-202ENST00000381575 TARBP1Q13395 1621 aaKnown RBP25.78■■□□□ 1.72
SHOX-202ENST00000381575 POLA1P09884 1462 aaPredicted RBP25.75■■□□□ 1.71
SHOX-202ENST00000381575 SUPT5HO00267 1087 aaKnown RBP25.72■■□□□ 1.71
SHOX-202ENST00000381575 AQRO60306 1485 aaKnown RBP eCLIP25.71■■□□□ 1.71
SHOX-202ENST00000381575 RAD54L2Q9Y4B4 1467 aa25.68■■□□□ 1.7
SHOX-202ENST00000381575 CHD1O14646 1710 aa25.65■■□□□ 1.7
SHOX-202ENST00000381575 CUX1P39880 1505 aa25.64■■□□□ 1.69
SHOX-202ENST00000381575 FGD5Q6ZNL6 1462 aa25.62■■□□□ 1.69
SHOX-202ENST00000381575 RIMBP3CA6NJZ7 1639 aa25.61■■□□□ 1.69
SHOX-202ENST00000381575 RIMBP3BA6NNM3 1639 aa25.61■■□□□ 1.69
SHOX-202ENST00000381575 RIMBP3Q9UFD9 1639 aa25.61■■□□□ 1.69
SHOX-202ENST00000381575 SOGA1O94964 1423 aa25.6■■□□□ 1.69
SHOX-202ENST00000381575 TDRD9Q8NDG6 1382 aaKnown RBP25.56■■□□□ 1.68
SHOX-202ENST00000381575 FBLN2P98095 1184 aa25.51■■□□□ 1.67
SHOX-202ENST00000381575 ARHGEF11O15085 1522 aa25.51■■□□□ 1.67
SHOX-202ENST00000381575 WDR97A6NE52 1622 aa25.47■■□□□ 1.67
SHOX-202ENST00000381575 SNAPC4Q5SXM2 1469 aa25.46■■□□□ 1.67
SHOX-202ENST00000381575 PBRM1Q86U86 1689 aa25.38■■□□□ 1.65
SHOX-202ENST00000381575 GRIN2BQ13224 1484 aa25.35■■□□□ 1.65
SHOX-202ENST00000381575 MAGI1Q96QZ7 1491 aaPredicted RBP25.33■■□□□ 1.65
SHOX-202ENST00000381575 GAPVD1Q14C86 1478 aa25.3■■□□□ 1.64
SHOX-202ENST00000381575 ABCA5Q8WWZ7 1642 aa25.29■■□□□ 1.64
SHOX-202ENST00000381575 ABCA10Q8WWZ4 1543 aa25.29■■□□□ 1.64
SHOX-202ENST00000381575 CYB5RLQ6IPT4 315 aa25.29■■□□□ 1.64
SHOX-202ENST00000381575 CHMP7Q8WUX9 453 aaPredicted RBP25.29■■□□□ 1.64
SHOX-202ENST00000381575 ARAP1Q96P48 1450 aa25.28■■□□□ 1.64
SHOX-202ENST00000381575 SYNJ1O43426 1573 aa25.27■■□□□ 1.64
SHOX-202ENST00000381575 CLASP1Q7Z460 1538 aa25.27■■□□□ 1.64
SHOX-202ENST00000381575 BIVM-ERCC5R4GMW8 1640 aa25.25■■□□□ 1.63
SHOX-202ENST00000381575 SYNJ2O15056 1496 aa25.25■■□□□ 1.63
SHOX-202ENST00000381575 TOP2BQ02880 1626 aa25.23■■□□□ 1.63
SHOX-202ENST00000381575 WRNQ14191 1432 aaPredicted RBP eCLIP25.21■■□□□ 1.63
SHOX-202ENST00000381575 ADAMTS12P58397 1594 aa25.1■■□□□ 1.61
SHOX-202ENST00000381575 GRIN2AQ12879 1464 aa25.05■■□□□ 1.6
SHOX-202ENST00000381575 CEP170Q5SW79 1584 aa25■■□□□ 1.59
SHOX-202ENST00000381575 TRHP20396 242 aaPredicted RBP24.97■■□□□ 1.59
SHOX-202ENST00000381575 ERCC6L2Q5T890 1561 aa24.97■■□□□ 1.59
SHOX-202ENST00000381575 ERICH3Q5RHP9 1530 aa24.96■■□□□ 1.59
SHOX-202ENST00000381575 FHAD1B1AJZ9 1412 aa24.95■■□□□ 1.58
SHOX-202ENST00000381575 NUP160Q12769 1436 aa24.93■■□□□ 1.58
SHOX-202ENST00000381575 SHROOM2Q13796 1616 aa24.85■■□□□ 1.57
SHOX-202ENST00000381575 RUSC2Q8N2Y8 1516 aa24.75■■□□□ 1.55
SHOX-202ENST00000381575 PRG4Q92954 1404 aaPredicted RBP24.71■■□□□ 1.55
SHOX-202ENST00000381575 KIF27Q86VH2 1401 aa24.69■■□□□ 1.54
SHOX-202ENST00000381575 IGF1RP08069 1367 aa24.68■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms