RNA–Protein interactions for RNA: ENST00000530004.5

TTC39A-216, Transcript of tetratricopeptide repeat domain 39A, humanhuman

TSL 1 (best) BASIC

Gene TTC39A, Length 1,780 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC39A-216ENST00000530004 NISCHQ9Y2I1 1504 aa33.63■■■□□ 2.97
TTC39A-216ENST00000530004 CCDC180Q9P1Z9 1646 aa29.62■■■□□ 2.33
TTC39A-216ENST00000530004 ABCC9O60706 1549 aa28.59■■■□□ 2.17
TTC39A-216ENST00000530004 ZCCHC6Q5VYS8 1495 aaKnown RBP28.12■■■□□ 2.09
TTC39A-216ENST00000530004 DCAF8L2P0C7V8 631 aa27.94■■■□□ 2.06
TTC39A-216ENST00000530004 DCAF1Q9Y4B6 1507 aa27.84■■■□□ 2.05
TTC39A-216ENST00000530004 MYO15BQ96JP2 1530 aa27.78■■■□□ 2.04
TTC39A-216ENST00000530004 NACADO15069 1562 aa27.77■■■□□ 2.04
TTC39A-216ENST00000530004 RB1CC1Q8TDY2 1594 aa27.67■■■□□ 2.02
TTC39A-216ENST00000530004 SCRIBQ14160 1630 aa27.1■■□□□ 1.93
TTC39A-216ENST00000530004 UNC13AQ9UPW8 1703 aa27■■□□□ 1.91
TTC39A-216ENST00000530004 SHROOM4Q9ULL8 1493 aa26.9■■□□□ 1.9
TTC39A-216ENST00000530004 BICRAQ9NZM4 1560 aa26.83■■□□□ 1.89
TTC39A-216ENST00000530004 PABPN1Q86U42 306 aaKnown RBP eCLIP26.83■■□□□ 1.89
TTC39A-216ENST00000530004 CECR2Q9BXF3 1484 aa26.17■■□□□ 1.78
TTC39A-216ENST00000530004 EIF4G1Q04637 1599 aaKnown RBP26.09■■□□□ 1.77
TTC39A-216ENST00000530004 BAZ1AQ9NRL2 1556 aaPredicted RBP26.02■■□□□ 1.76
TTC39A-216ENST00000530004 SMARCA4P51532 1647 aa25.97■■□□□ 1.75
TTC39A-216ENST00000530004 MROH2BQ7Z745 1585 aa25.93■■□□□ 1.74
TTC39A-216ENST00000530004 CC2D2AQ9P2K1 1620 aa25.85■■□□□ 1.73
TTC39A-216ENST00000530004 RSF1Q96T23 1441 aaPredicted RBP25.84■■□□□ 1.73
TTC39A-216ENST00000530004 DNAJC5BQ9UF47 199 aa25.83■■□□□ 1.73
TTC39A-216ENST00000530004 ATAD2BQ9ULI0 1458 aa25.74■■□□□ 1.71
TTC39A-216ENST00000530004 PEG3Q9GZU2 1588 aa25.71■■□□□ 1.71
TTC39A-216ENST00000530004 SMARCA2P51531 1590 aa25.7■■□□□ 1.7
TTC39A-216ENST00000530004 WIZO95785 1651 aa25.65■■□□□ 1.7
TTC39A-216ENST00000530004 NCAPD3P42695 1498 aa25.65■■□□□ 1.7
TTC39A-216ENST00000530004 SUPT5HO00267 1087 aaKnown RBP25.59■■□□□ 1.69
TTC39A-216ENST00000530004 BAZ1BQ9UIG0 1483 aaKnown RBP25.54■■□□□ 1.68
TTC39A-216ENST00000530004 HMGXB3Q12766 1538 aa25.54■■□□□ 1.68
TTC39A-216ENST00000530004 TOP2AP11388 1531 aaKnown RBP25.42■■□□□ 1.66
TTC39A-216ENST00000530004 CCDC88BA6NC98 1476 aa25.14■■□□□ 1.62
TTC39A-216ENST00000530004 CADPSQ9ULU8 1353 aa24.94■■□□□ 1.58
TTC39A-216ENST00000530004 CFTRP13569 1480 aa24.89■■□□□ 1.57
TTC39A-216ENST00000530004 NESP48681 1621 aa24.88■■□□□ 1.57
TTC39A-216ENST00000530004 LAMC3Q9Y6N6 1575 aa24.86■■□□□ 1.57
TTC39A-216ENST00000530004 PDS5BQ9NTI5 1447 aa24.71■■□□□ 1.55
TTC39A-216ENST00000530004 FANCD2Q9BXW9 1451 aa24.64■■□□□ 1.53
TTC39A-216ENST00000530004 PRDM2Q13029 1718 aa24.62■■□□□ 1.53
TTC39A-216ENST00000530004 ERCC6Q03468 1493 aa24.59■■□□□ 1.53
TTC39A-216ENST00000530004 CEP164Q9UPV0 1460 aa24.55■■□□□ 1.52
TTC39A-216ENST00000530004 KIF21AQ7Z4S6 1674 aa24.54■■□□□ 1.52
TTC39A-216ENST00000530004 CHIC1Q5VXU3 224 aa24.43■■□□□ 1.5
TTC39A-216ENST00000530004 MRC2Q9UBG0 1479 aa24.41■■□□□ 1.5
TTC39A-216ENST00000530004 ABCC8Q09428 1581 aa24.36■■□□□ 1.49
TTC39A-216ENST00000530004 THOC2Q8NI27 1593 aaKnown RBP24.36■■□□□ 1.49
TTC39A-216ENST00000530004 URB2Q14146 1524 aaKnown RBP24.36■■□□□ 1.49
TTC39A-216ENST00000530004 WRNQ14191 1432 aaPredicted RBP eCLIP24.34■■□□□ 1.49
TTC39A-216ENST00000530004 WDR62O43379 1518 aa24.31■■□□□ 1.48
TTC39A-216ENST00000530004 CUX1P39880 1505 aa24.29■■□□□ 1.48
TTC39A-216ENST00000530004 TOPBP1Q92547 1522 aa24.29■■□□□ 1.48
TTC39A-216ENST00000530004 DNMBPQ6XZF7 1577 aa24.29■■□□□ 1.48
TTC39A-216ENST00000530004 SYNJ1O43426 1573 aa24.22■■□□□ 1.47
TTC39A-216ENST00000530004 TOP2BQ02880 1626 aa24.2■■□□□ 1.46
TTC39A-216ENST00000530004 BIVM-ERCC5R4GMW8 1640 aa24.17■■□□□ 1.46
TTC39A-216ENST00000530004 CUX2O14529 1486 aa24.14■■□□□ 1.46
TTC39A-216ENST00000530004 FGD5Q6ZNL6 1462 aa24.14■■□□□ 1.46
TTC39A-216ENST00000530004 POLA1P09884 1462 aaPredicted RBP24.13■■□□□ 1.45
TTC39A-216ENST00000530004 TRIM41Q8WV44 630 aa24.12■■□□□ 1.45
TTC39A-216ENST00000530004 SOGA1O94964 1423 aa24.05■■□□□ 1.44
TTC39A-216ENST00000530004 RAD54L2Q9Y4B4 1467 aa24.03■■□□□ 1.44
TTC39A-216ENST00000530004 IFT140Q96RY7 1462 aa24.02■■□□□ 1.44
TTC39A-216ENST00000530004 TARBP1Q13395 1621 aaKnown RBP23.97■■□□□ 1.43
TTC39A-216ENST00000530004 ABCA10Q8WWZ4 1543 aa23.93■■□□□ 1.42
TTC39A-216ENST00000530004 ZNF608Q9ULD9 1512 aaPredicted RBP23.88■■□□□ 1.41
TTC39A-216ENST00000530004 TDRD9Q8NDG6 1382 aaKnown RBP23.87■■□□□ 1.41
TTC39A-216ENST00000530004 WDR97A6NE52 1622 aa23.86■■□□□ 1.41
TTC39A-216ENST00000530004 AQRO60306 1485 aaKnown RBP eCLIP23.82■■□□□ 1.4
TTC39A-216ENST00000530004 KIF27Q86VH2 1401 aa23.79■■□□□ 1.4
TTC39A-216ENST00000530004 EIF4G3O43432 1585 aaKnown RBP23.77■■□□□ 1.4
TTC39A-216ENST00000530004 GAPVD1Q14C86 1478 aa23.77■■□□□ 1.4
TTC39A-216ENST00000530004 ABCA5Q8WWZ7 1642 aa23.76■■□□□ 1.39
TTC39A-216ENST00000530004 RUSC2Q8N2Y8 1516 aa23.74■■□□□ 1.39
TTC39A-216ENST00000530004 GRIN2BQ13224 1484 aa23.69■■□□□ 1.38
TTC39A-216ENST00000530004 IGF1RP08069 1367 aa23.65■■□□□ 1.38
TTC39A-216ENST00000530004 EEA1Q15075 1411 aa23.65■■□□□ 1.38
TTC39A-216ENST00000530004 ERICH3Q5RHP9 1530 aa23.64■■□□□ 1.37
TTC39A-216ENST00000530004 FAM9AQ8IZU1 332 aaPredicted RBP23.63■■□□□ 1.37
TTC39A-216ENST00000530004 PBRM1Q86U86 1689 aa23.62■■□□□ 1.37
TTC39A-216ENST00000530004 SNAPC4Q5SXM2 1469 aa23.59■■□□□ 1.37
TTC39A-216ENST00000530004 CSRNP3Q8WYN3 585 aa23.57■■□□□ 1.36
TTC39A-216ENST00000530004 MAGI1Q96QZ7 1491 aaPredicted RBP23.57■■□□□ 1.36
TTC39A-216ENST00000530004 FHAD1B1AJZ9 1412 aa23.52■■□□□ 1.36
TTC39A-216ENST00000530004 CARMIL1Q5VZK9 1371 aa23.51■■□□□ 1.35
TTC39A-216ENST00000530004 LOC105371045A0A1W2PR82 267 aa23.51■■□□□ 1.35
TTC39A-216ENST00000530004 ADAMTS12P58397 1594 aa23.5■■□□□ 1.35
TTC39A-216ENST00000530004 CUL7Q14999 1698 aa23.49■■□□□ 1.35
TTC39A-216ENST00000530004 SYNJ2O15056 1496 aa23.48■■□□□ 1.35
TTC39A-216ENST00000530004 PRXQ9BXM0 1461 aa23.46■■□□□ 1.35
TTC39A-216ENST00000530004 CHMP7Q8WUX9 453 aaPredicted RBP23.46■■□□□ 1.35
TTC39A-216ENST00000530004 FBLN2P98095 1184 aa23.45■■□□□ 1.34
TTC39A-216ENST00000530004 RAPGEF2Q9Y4G8 1499 aa23.41■■□□□ 1.34
TTC39A-216ENST00000530004 GRIN2AQ12879 1464 aa23.39■■□□□ 1.33
TTC39A-216ENST00000530004 CHD1O14646 1710 aa23.34■■□□□ 1.33
TTC39A-216ENST00000530004 KIF21BO75037 1637 aa23.34■■□□□ 1.33
TTC39A-216ENST00000530004 EHMT2Q96KQ7 1210 aa23.31■■□□□ 1.32
TTC39A-216ENST00000530004 NUP160Q12769 1436 aa23.28■■□□□ 1.32
TTC39A-216ENST00000530004 OSCARQ8IYS5 282 aa23.27■■□□□ 1.32
TTC39A-216ENST00000530004 GOLGA3Q08378 1498 aa23.27■■□□□ 1.32
TTC39A-216ENST00000530004 CEP170Q5SW79 1584 aa23.24■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms