RNA–Protein interactions for RNA: ENST00000316308.8

CLK4-201, Transcript of CDC like kinase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK4, Length 2,568 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK4-201ENST00000316308 NISCHQ9Y2I1 1504 aa31.43■■■□□ 2.62
CLK4-201ENST00000316308 SHROOM4Q9ULL8 1493 aa26.85■■□□□ 1.89
CLK4-201ENST00000316308 CCDC180Q9P1Z9 1646 aa26.69■■□□□ 1.86
CLK4-201ENST00000316308 ZCCHC6Q5VYS8 1495 aaKnown RBP26.52■■□□□ 1.84
CLK4-201ENST00000316308 DCAF8L2P0C7V8 631 aa26.35■■□□□ 1.81
CLK4-201ENST00000316308 SUPT5HO00267 1087 aaKnown RBP26.16■■□□□ 1.78
CLK4-201ENST00000316308 DCAF1Q9Y4B6 1507 aa25.64■■□□□ 1.69
CLK4-201ENST00000316308 ABCC9O60706 1549 aa25.24■■□□□ 1.63
CLK4-201ENST00000316308 CHIC1Q5VXU3 224 aa25.23■■□□□ 1.63
CLK4-201ENST00000316308 SCRIBQ14160 1630 aa25.21■■□□□ 1.63
CLK4-201ENST00000316308 MYO15BQ96JP2 1530 aa25.16■■□□□ 1.62
CLK4-201ENST00000316308 RSF1Q96T23 1441 aaPredicted RBP24.83■■□□□ 1.57
CLK4-201ENST00000316308 NACADO15069 1562 aa24.77■■□□□ 1.56
CLK4-201ENST00000316308 CECR2Q9BXF3 1484 aa24.69■■□□□ 1.54
CLK4-201ENST00000316308 LOC105371045A0A1W2PR82 267 aa24.6■■□□□ 1.53
CLK4-201ENST00000316308 RB1CC1Q8TDY2 1594 aa24.57■■□□□ 1.52
CLK4-201ENST00000316308 MROH2BQ7Z745 1585 aa24.51■■□□□ 1.51
CLK4-201ENST00000316308 WIZO95785 1651 aa24.37■■□□□ 1.49
CLK4-201ENST00000316308 TRIM41Q8WV44 630 aa24.27■■□□□ 1.48
CLK4-201ENST00000316308 FAM9AQ8IZU1 332 aaPredicted RBP24.23■■□□□ 1.47
CLK4-201ENST00000316308 UNC13AQ9UPW8 1703 aa24.22■■□□□ 1.47
CLK4-201ENST00000316308 PCGF6Q9BYE7 350 aa24.22■■□□□ 1.47
CLK4-201ENST00000316308 PABPN1Q86U42 306 aaKnown RBP eCLIP24.17■■□□□ 1.46
CLK4-201ENST00000316308 EHMT2Q96KQ7 1210 aa24.15■■□□□ 1.46
CLK4-201ENST00000316308 BAZ1AQ9NRL2 1556 aaPredicted RBP24.09■■□□□ 1.45
CLK4-201ENST00000316308 SMARCA4P51532 1647 aa23.99■■□□□ 1.43
CLK4-201ENST00000316308 BICRAQ9NZM4 1560 aa23.95■■□□□ 1.42
CLK4-201ENST00000316308 HRCP23327 699 aa23.91■■□□□ 1.42
CLK4-201ENST00000316308 EIF4G1Q04637 1599 aaKnown RBP23.85■■□□□ 1.41
CLK4-201ENST00000316308 CCDC88BA6NC98 1476 aa23.85■■□□□ 1.41
CLK4-201ENST00000316308 TOP2AP11388 1531 aaKnown RBP23.85■■□□□ 1.41
CLK4-201ENST00000316308 ABCC8Q09428 1581 aa23.79■■□□□ 1.4
CLK4-201ENST00000316308 SMARCA2P51531 1590 aa23.78■■□□□ 1.4
CLK4-201ENST00000316308 PPARGC1BQ86YN6 1023 aaKnown RBP23.72■■□□□ 1.39
CLK4-201ENST00000316308 TRIM26Q12899 539 aaPredicted RBP23.66■■□□□ 1.38
CLK4-201ENST00000316308 SOGA1O94964 1423 aa23.51■■□□□ 1.35
CLK4-201ENST00000316308 ATAD2BQ9ULI0 1458 aa23.47■■□□□ 1.35
CLK4-201ENST00000316308 PEG3Q9GZU2 1588 aa23.46■■□□□ 1.35
CLK4-201ENST00000316308 RUSC2Q8N2Y8 1516 aa23.46■■□□□ 1.35
CLK4-201ENST00000316308 BAZ1BQ9UIG0 1483 aaKnown RBP23.36■■□□□ 1.33
CLK4-201ENST00000316308 WRNQ14191 1432 aaPredicted RBP eCLIP23.29■■□□□ 1.32
CLK4-201ENST00000316308 TTBK1Q5TCY1 1321 aaPredicted RBP23.26■■□□□ 1.31
CLK4-201ENST00000316308 SYNJ1O43426 1573 aa23.25■■□□□ 1.31
CLK4-201ENST00000316308 CSRNP3Q8WYN3 585 aa23.24■■□□□ 1.31
CLK4-201ENST00000316308 UBTFP17480 764 aaKnown RBP23.17■■□□□ 1.3
CLK4-201ENST00000316308 CEP162Q5TB80 1403 aa23.17■■□□□ 1.3
CLK4-201ENST00000316308 TNIKQ9UKE5 1360 aa23.08■■□□□ 1.29
CLK4-201ENST00000316308 EEA1Q15075 1411 aa23.04■■□□□ 1.28
CLK4-201ENST00000316308 NCAPD3P42695 1498 aa23■■□□□ 1.27
CLK4-201ENST00000316308 GOLGA3Q08378 1498 aa22.98■■□□□ 1.27
CLK4-201ENST00000316308 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.97■■□□□ 1.27
CLK4-201ENST00000316308 RANGAP1P46060 587 aaPredicted RBP22.97■■□□□ 1.27
CLK4-201ENST00000316308 HMGXB3Q12766 1538 aa22.92■■□□□ 1.26
CLK4-201ENST00000316308 RAPGEF2Q9Y4G8 1499 aa22.9■■□□□ 1.26
CLK4-201ENST00000316308 TOP2BQ02880 1626 aa22.88■■□□□ 1.25
CLK4-201ENST00000316308 CEP164Q9UPV0 1460 aa22.87■■□□□ 1.25
CLK4-201ENST00000316308 ZEB1P37275 1124 aaPredicted RBP22.84■■□□□ 1.25
CLK4-201ENST00000316308 KIF21BO75037 1637 aa22.82■■□□□ 1.24
CLK4-201ENST00000316308 CUX1P39880 1505 aa22.81■■□□□ 1.24
CLK4-201ENST00000316308 BIVM-ERCC5R4GMW8 1640 aa22.78■■□□□ 1.24
CLK4-201ENST00000316308 CLIP1P30622 1438 aa22.78■■□□□ 1.24
CLK4-201ENST00000316308 CFTRP13569 1480 aa22.77■■□□□ 1.23
CLK4-201ENST00000316308 CCER1Q8TC90 406 aaPredicted RBP22.75■■□□□ 1.23
CLK4-201ENST00000316308 CC2D2AQ9P2K1 1620 aa22.65■■□□□ 1.22
CLK4-201ENST00000316308 PRXQ9BXM0 1461 aa22.62■■□□□ 1.21
CLK4-201ENST00000316308 VPS8Q8N3P4 1428 aa22.61■■□□□ 1.21
CLK4-201ENST00000316308 CADPSQ9ULU8 1353 aa22.58■■□□□ 1.2
CLK4-201ENST00000316308 HNRNPUL2Q1KMD3 747 aaKnown RBP22.57■■□□□ 1.2
CLK4-201ENST00000316308 KIF27Q86VH2 1401 aa22.54■■□□□ 1.2
CLK4-201ENST00000316308 ERICH3Q5RHP9 1530 aa22.49■■□□□ 1.19
CLK4-201ENST00000316308 DNAJC5BQ9UF47 199 aa22.48■■□□□ 1.19
CLK4-201ENST00000316308 ARAP1Q96P48 1450 aa22.48■■□□□ 1.19
CLK4-201ENST00000316308 CUX2O14529 1486 aa22.47■■□□□ 1.19
CLK4-201ENST00000316308 NESP48681 1621 aa22.46■■□□□ 1.19
CLK4-201ENST00000316308 APLP2Q06481 763 aa22.45■■□□□ 1.19
CLK4-201ENST00000316308 PRDM2Q13029 1718 aa22.45■■□□□ 1.18
CLK4-201ENST00000316308 KANK4Q5T7N3 995 aaPredicted RBP22.45■■□□□ 1.18
CLK4-201ENST00000316308 FGD5Q6ZNL6 1462 aa22.43■■□□□ 1.18
CLK4-201ENST00000316308 IGF1RP08069 1367 aa22.42■■□□□ 1.18
CLK4-201ENST00000316308 FANCD2Q9BXW9 1451 aa22.38■■□□□ 1.17
CLK4-201ENST00000316308 ARHGAP35Q9NRY4 1499 aa22.34■■□□□ 1.17
CLK4-201ENST00000316308 RAD54L2Q9Y4B4 1467 aa22.33■■□□□ 1.17
CLK4-201ENST00000316308 CARMIL1Q5VZK9 1371 aa22.29■■□□□ 1.16
CLK4-201ENST00000316308 P3H3Q8IVL6 736 aa22.23■■□□□ 1.15
CLK4-201ENST00000316308 TOPBP1Q92547 1522 aa22.21■■□□□ 1.15
CLK4-201ENST00000316308 POLA1P09884 1462 aaPredicted RBP22.21■■□□□ 1.15
CLK4-201ENST00000316308 DNMBPQ6XZF7 1577 aa22.16■■□□□ 1.14
CLK4-201ENST00000316308 DIEXFQ68CQ4 756 aaKnown RBP22.14■■□□□ 1.13
CLK4-201ENST00000316308 URB2Q14146 1524 aaKnown RBP22.12■■□□□ 1.13
CLK4-201ENST00000316308 ITGAEP38570 1179 aa22.12■■□□□ 1.13
CLK4-201ENST00000316308 ABCA10Q8WWZ4 1543 aa22.09■■□□□ 1.13
CLK4-201ENST00000316308 TDRD9Q8NDG6 1382 aaKnown RBP22.08■■□□□ 1.12
CLK4-201ENST00000316308 ATP1B4Q9UN42 357 aaPredicted RBP22.06■■□□□ 1.12
CLK4-201ENST00000316308 RRBP1Q9P2E9 1410 aaKnown RBP22.03■■□□□ 1.12
CLK4-201ENST00000316308 FHOD3Q2V2M9 1422 aa22.02■■□□□ 1.12
CLK4-201ENST00000316308 ZNF316A6NFI3 1004 aaPredicted RBP22.01■■□□□ 1.11
CLK4-201ENST00000316308 LAMC3Q9Y6N6 1575 aa22■■□□□ 1.11
CLK4-201ENST00000316308 DHX57Q6P158 1386 aaKnown RBP22■■□□□ 1.11
CLK4-201ENST00000316308 CCNB3Q8WWL7 1395 aa21.99■■□□□ 1.11
CLK4-201ENST00000316308 TIAM1Q13009 1591 aa21.97■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms