Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
HMGA1P17096 ANKDD1A-202ENST00000395720 1518 ntTSL 5 BASIC14.84□□□□□ -0.03
HMGA1P17096 ADPRH-205ENST00000478927 1501 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
HMGA1P17096 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
HMGA1P17096 IGHV3-49-201ENST00000390625 439 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
HMGA1P17096 KRTAP2-2-201ENST00000398477 733 ntAPPRIS P2 BASIC14.84□□□□□ -0.03
HMGA1P17096 SGO1-AS1-201ENST00000441442 499 ntTSL 4 BASIC14.84□□□□□ -0.03
HMGA1P17096 AC018463.1-201ENST00000456674 917 ntBASIC14.84□□□□□ -0.03
HMGA1P17096 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC14.84□□□□□ -0.03
HMGA1P17096 PARP8-206ENST00000503665 572 ntTSL 4 BASIC14.84□□□□□ -0.03
HMGA1P17096 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC14.84□□□□□ -0.03
HMGA1P17096 OR5BD1P-201ENST00000532527 817 ntBASIC14.84□□□□□ -0.03
HMGA1P17096 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
HMGA1P17096 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC14.84□□□□□ -0.03
HMGA1P17096 CR383656.3-201ENST00000551315 183 ntBASIC14.84□□□□□ -0.03
HMGA1P17096 CMC2-204ENST00000562713 573 ntTSL 3 BASIC14.84□□□□□ -0.03
HMGA1P17096 CMC2-209ENST00000565108 399 ntTSL 2 BASIC14.84□□□□□ -0.03
HMGA1P17096 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC14.84□□□□□ -0.03
HMGA1P17096 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
HMGA1P17096 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC14.84□□□□□ -0.03
HMGA1P17096 OXA1L-212ENST00000604262 1571 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HMGA1P17096 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
HMGA1P17096 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC14.84□□□□□ -0.03
HMGA1P17096 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HMGA1P17096 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
HMGA1P17096 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HMGA1P17096 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC14.84□□□□□ -0.03
HMGA1P17096 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
HMGA1P17096 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC14.84□□□□□ -0.03
HMGA1P17096 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
HMGA1P17096 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC14.84□□□□□ -0.03
HMGA1P17096 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HMGA1P17096 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
HMGA1P17096 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
HMGA1P17096 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC14.83□□□□□ -0.03
HMGA1P17096 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
HMGA1P17096 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
HMGA1P17096 NID2-208ENST00000617139 3827 ntTSL 5 BASIC14.83□□□□□ -0.03
HMGA1P17096 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
HMGA1P17096 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC14.83□□□□□ -0.03
HMGA1P17096 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
HMGA1P17096 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
HMGA1P17096 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC14.83□□□□□ -0.04
HMGA1P17096 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
HMGA1P17096 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HMGA1P17096 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
HMGA1P17096 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HMGA1P17096 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
HMGA1P17096 AC007686.3-201ENST00000619017 3487 ntBASIC14.83□□□□□ -0.04
HMGA1P17096 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
HMGA1P17096 NR0B2-201ENST00000254227 1156 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HMGA1P17096 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
HMGA1P17096 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
HMGA1P17096 TNNT2-203ENST00000367315 1083 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
HMGA1P17096 SPIN2B-203ENST00000374910 725 ntTSL 3 BASIC14.83□□□□□ -0.04
HMGA1P17096 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC14.83□□□□□ -0.04
HMGA1P17096 CELP-201ENST00000411440 1249 ntTSL 5 BASIC14.83□□□□□ -0.04
HMGA1P17096 LINC00265-2P-201ENST00000413372 782 ntBASIC14.83□□□□□ -0.04
HMGA1P17096 AC005392.1-201ENST00000419624 500 ntTSL 5 BASIC14.83□□□□□ -0.04
HMGA1P17096 AL355803.1-201ENST00000455524 188 ntTSL 2 BASIC14.83□□□□□ -0.04
HMGA1P17096 DPY19L2P5-201ENST00000456300 331 ntBASIC14.83□□□□□ -0.04
HMGA1P17096 IGHV3-37-201ENST00000518544 340 ntBASIC14.83□□□□□ -0.04
HMGA1P17096 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
HMGA1P17096 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
HMGA1P17096 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC14.83□□□□□ -0.04
HMGA1P17096 DUSP22-213ENST00000605035 1231 ntTSL 2 BASIC14.83□□□□□ -0.04
HMGA1P17096 AC105137.3-201ENST00000617588 984 ntBASIC14.83□□□□□ -0.04
HMGA1P17096 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
HMGA1P17096 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
HMGA1P17096 LINC00552-201ENST00000625151 2579 ntBASIC14.83□□□□□ -0.04
HMGA1P17096 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
HMGA1P17096 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
HMGA1P17096 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
HMGA1P17096 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
HMGA1P17096 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HMGA1P17096 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
HMGA1P17096 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
HMGA1P17096 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
HMGA1P17096 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC14.83□□□□□ -0.04
HMGA1P17096 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
HMGA1P17096 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC14.83□□□□□ -0.04
HMGA1P17096 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
HMGA1P17096 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
HMGA1P17096 SLC25A31-201ENST00000281154 1841 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HMGA1P17096 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HMGA1P17096 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HMGA1P17096 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC14.82□□□□□ -0.04
HMGA1P17096 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
HMGA1P17096 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
HMGA1P17096 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HMGA1P17096 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
HMGA1P17096 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC14.82□□□□□ -0.04
HMGA1P17096 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
HMGA1P17096 OR2V1-201ENST00000329365 948 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
HMGA1P17096 LEMD1-205ENST00000367154 786 ntTSL 2 BASIC14.82□□□□□ -0.04
HMGA1P17096 AL935212.1-201ENST00000377548 906 ntTSL 5 BASIC14.82□□□□□ -0.04
HMGA1P17096 RN7SKP109-201ENST00000410592 316 ntBASIC14.82□□□□□ -0.04
HMGA1P17096 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
HMGA1P17096 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
HMGA1P17096 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms