RNA–Protein interactions for RNA: ENST00000380518.7

COL2A1-202, Transcript of collagen type II alpha 1 chain, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene COL2A1, Length 5,071 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1-202ENST00000380518 DCAF8L2P0C7V8 631 aa27.62■■■□□ 2.01
COL2A1-202ENST00000380518 SUPT5HO00267 1087 aaKnown RBP26.38■■□□□ 1.81
COL2A1-202ENST00000380518 NISCHQ9Y2I1 1504 aa26.22■■□□□ 1.79
COL2A1-202ENST00000380518 SHROOM4Q9ULL8 1493 aa25.78■■□□□ 1.72
COL2A1-202ENST00000380518 EHMT2Q96KQ7 1210 aa25.44■■□□□ 1.66
COL2A1-202ENST00000380518 PELP1Q8IZL8 1130 aaKnown RBP25.32■■□□□ 1.64
COL2A1-202ENST00000380518 APLP2Q06481 763 aa25.19■■□□□ 1.62
COL2A1-202ENST00000380518 FAM9AQ8IZU1 332 aaPredicted RBP24.88■■□□□ 1.57
COL2A1-202ENST00000380518 PCGF6Q9BYE7 350 aa24.77■■□□□ 1.56
COL2A1-202ENST00000380518 TTBK1Q5TCY1 1321 aaPredicted RBP24.64■■□□□ 1.53
COL2A1-202ENST00000380518 ZEB1P37275 1124 aaPredicted RBP24.51■■□□□ 1.51
COL2A1-202ENST00000380518 TRIM41Q8WV44 630 aa24.47■■□□□ 1.51
COL2A1-202ENST00000380518 CENPBP07199 599 aaPredicted RBP24.46■■□□□ 1.51
COL2A1-202ENST00000380518 CCER1Q8TC90 406 aaPredicted RBP24.37■■□□□ 1.49
COL2A1-202ENST00000380518 RANGAP1P46060 587 aaPredicted RBP24.34■■□□□ 1.49
COL2A1-202ENST00000380518 ERICH6Q7L0X2 663 aa24.18■■□□□ 1.46
COL2A1-202ENST00000380518 UBTFP17480 764 aaKnown RBP24.18■■□□□ 1.46
COL2A1-202ENST00000380518 ATP1B4Q9UN42 357 aaPredicted RBP24.16■■□□□ 1.46
COL2A1-202ENST00000380518 NEFLP07196 543 aa23.92■■□□□ 1.42
COL2A1-202ENST00000380518 YTHDC1Q96MU7 727 aaKnown RBP23.8■■□□□ 1.4
COL2A1-202ENST00000380518 TRIM26Q12899 539 aaPredicted RBP23.76■■□□□ 1.39
COL2A1-202ENST00000380518 PPARGC1BQ86YN6 1023 aaKnown RBP23.72■■□□□ 1.39
COL2A1-202ENST00000380518 MYT1Q01538 1121 aa23.61■■□□□ 1.37
COL2A1-202ENST00000380518 HRCP23327 699 aa23.53■■□□□ 1.36
COL2A1-202ENST00000380518 CHIC1Q5VXU3 224 aa23.41■■□□□ 1.34
COL2A1-202ENST00000380518 ITGAEP38570 1179 aa23.4■■□□□ 1.34
COL2A1-202ENST00000380518 LOC105371045A0A1W2PR82 267 aa23.38■■□□□ 1.33
COL2A1-202ENST00000380518 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.3■■□□□ 1.32
COL2A1-202ENST00000380518 HNRNPUL2Q1KMD3 747 aaKnown RBP23.3■■□□□ 1.32
COL2A1-202ENST00000380518 POLR3GLQ9BT43 218 aa23.24■■□□□ 1.31
COL2A1-202ENST00000380518 DAXXQ9UER7 740 aaPredicted RBP23.2■■□□□ 1.3
COL2A1-202ENST00000380518 MYT1LQ9UL68 1186 aa23.2■■□□□ 1.3
COL2A1-202ENST00000380518 CNGB1Q14028 1251 aaPredicted RBP22.98■■□□□ 1.27
COL2A1-202ENST00000380518 DIEXFQ68CQ4 756 aaKnown RBP22.95■■□□□ 1.26
COL2A1-202ENST00000380518 FAM50AQ14320 339 aaKnown RBP22.81■■□□□ 1.24
COL2A1-202ENST00000380518 SLC4A1APQ9BWU0 796 aaKnown RBP22.76■■□□□ 1.23
COL2A1-202ENST00000380518 TRIM52Q96A61 297 aa22.7■■□□□ 1.22
COL2A1-202ENST00000380518 RTL5Q5HYW3 569 aaPredicted RBP22.69■■□□□ 1.22
COL2A1-202ENST00000380518 CLSPNQ9HAW4 1339 aa22.69■■□□□ 1.22
COL2A1-202ENST00000380518 ZNF316A6NFI3 1004 aaPredicted RBP22.64■■□□□ 1.22
COL2A1-202ENST00000380518 NEUROD1Q13562 356 aa22.63■■□□□ 1.21
COL2A1-202ENST00000380518 PABPN1Q86U42 306 aaKnown RBP eCLIP22.59■■□□□ 1.217e-7■■□□□ 14.1
COL2A1-202ENST00000380518 ANP32CO43423 234 aa22.53■■□□□ 1.2
COL2A1-202ENST00000380518 ABCC9O60706 1549 aa22.52■■□□□ 1.2
COL2A1-202ENST00000380518 GTF3C3Q9Y5Q9 886 aa22.47■■□□□ 1.19
COL2A1-202ENST00000380518 ZNF326Q5BKZ1 582 aaKnown RBP22.43■■□□□ 1.18
COL2A1-202ENST00000380518 BCANQ96GW7 911 aa22.43■■□□□ 1.18
COL2A1-202ENST00000380518 CDK11AQ9UQ88 783 aaPredicted RBP22.36■■□□□ 1.17
COL2A1-202ENST00000380518 CSRNP3Q8WYN3 585 aa22.31■■□□□ 1.16
COL2A1-202ENST00000380518 ZBTB47Q9UFB7 747 aaPredicted RBP22.26■■□□□ 1.15
COL2A1-202ENST00000380518 FBLN2P98095 1184 aa22.25■■□□□ 1.15
COL2A1-202ENST00000380518 P3H3Q8IVL6 736 aa22.17■■□□□ 1.14
COL2A1-202ENST00000380518 ACIN1Q9UKV3 1341 aaKnown RBP22.17■■□□□ 1.14
COL2A1-202ENST00000380518 CANXP27824 592 aaKnown RBP22.14■■□□□ 1.13
COL2A1-202ENST00000380518 NEFMP07197 916 aa22.09■■□□□ 1.13
COL2A1-202ENST00000380518 ARID3CA6NKF2 412 aa22.06■■□□□ 1.12
COL2A1-202ENST00000380518 ZNF777Q9ULD5 760 aaPredicted RBP22.01■■□□□ 1.11
COL2A1-202ENST00000380518 ANP32AP39687 249 aaKnown RBP22■■□□□ 1.11
COL2A1-202ENST00000380518 SLC24A1O60721 1099 aa21.96■■□□□ 1.11
COL2A1-202ENST00000380518 TONSLQ96HA7 1378 aa21.94■■□□□ 1.1
COL2A1-202ENST00000380518 BCL11AQ9H165 835 aa21.93■■□□□ 1.1
COL2A1-202ENST00000380518 DCAF1Q9Y4B6 1507 aa21.86■■□□□ 1.09
COL2A1-202ENST00000380518 FKBP8Q14318 412 aa21.84■■□□□ 1.09
COL2A1-202ENST00000380518 HNRNPUQ00839 825 aaKnown RBP eCLIP21.81■■□□□ 1.08
COL2A1-202ENST00000380518 NPM2Q86SE8 214 aaKnown RBP21.81■■□□□ 1.08
COL2A1-202ENST00000380518 DDX10Q13206 875 aaKnown RBP21.79■■□□□ 1.08
COL2A1-202ENST00000380518 SCRIBQ14160 1630 aa21.77■■□□□ 1.08
COL2A1-202ENST00000380518 FAM9BQ8IZU0 186 aa21.73■■□□□ 1.07
COL2A1-202ENST00000380518 ESF1Q9H501 851 aaKnown RBP21.7■■□□□ 1.06
COL2A1-202ENST00000380518 CHGAP10645 457 aaKnown RBP21.7■■□□□ 1.06
COL2A1-202ENST00000380518 ZCCHC6Q5VYS8 1495 aaKnown RBP21.68■■□□□ 1.06
COL2A1-202ENST00000380518 UPF2Q9HAU5 1272 aaKnown RBP21.67■■□□□ 1.06
COL2A1-202ENST00000380518 TMC1Q8TDI8 760 aa21.64■■□□□ 1.06
COL2A1-202ENST00000380518 HSP90AA1P07900 732 aaKnown RBP21.64■■□□□ 1.05
COL2A1-202ENST00000380518 STAG3Q9UJ98 1225 aa21.64■■□□□ 1.05
COL2A1-202ENST00000380518 CHIC2Q9UKJ5 165 aa21.63■■□□□ 1.05
COL2A1-202ENST00000380518 ANP32BQ92688 251 aaKnown RBP21.63■■□□□ 1.05
COL2A1-202ENST00000380518 CCDC136Q96JN2 1154 aa21.59■■□□□ 1.05
COL2A1-202ENST00000380518 SALL2Q9Y467 1007 aaPredicted RBP21.59■■□□□ 1.05
COL2A1-202ENST00000380518 NPM1P06748 294 aaKnown RBP eCLIP21.58■■□□□ 1.04
COL2A1-202ENST00000380518 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.57■■□□□ 1.04
COL2A1-202ENST00000380518 TSPY4P0CV99 314 aa21.56■■□□□ 1.04
COL2A1-202ENST00000380518 TSPY10P0CW01 314 aa21.56■■□□□ 1.04
COL2A1-202ENST00000380518 MRS2Q9HD23 443 aa21.55■■□□□ 1.04
COL2A1-202ENST00000380518 MTUS2Q5JR59 1369 aa21.54■■□□□ 1.04
COL2A1-202ENST00000380518 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.53■■□□□ 1.043e-6■□□□□ 11.3
COL2A1-202ENST00000380518 WDR43Q15061 677 aaKnown RBP eCLIP21.51■■□□□ 1.03
COL2A1-202ENST00000380518 CLIP1P30622 1438 aa21.49■■□□□ 1.03
COL2A1-202ENST00000380518 MIER1Q8N108 512 aa21.46■■□□□ 1.03
COL2A1-202ENST00000380518 KDM2AQ9Y2K7 1162 aa21.46■■□□□ 1.03
COL2A1-202ENST00000380518 EIF5BO60841 1220 aaKnown RBP21.43■■□□□ 1.02
COL2A1-202ENST00000380518 EIF4G2P78344 907 aaKnown RBP eCLIP21.43■■□□□ 1.02
COL2A1-202ENST00000380518 EEA1Q15075 1411 aa21.35■■□□□ 1.01
COL2A1-202ENST00000380518 HIRIP3Q9BW71 556 aaPredicted RBP21.35■■□□□ 1.01
COL2A1-202ENST00000380518 CHMP7Q8WUX9 453 aaPredicted RBP21.34■■□□□ 1.01
COL2A1-202ENST00000380518 NBR1Q14596 966 aa21.33■■□□□ 1.01
COL2A1-202ENST00000380518 RRP7BPQ9NSQ0 103 aa21.32■■□□□ 1
COL2A1-202ENST00000380518 SCAF1Q9H7N4 1312 aaKnown RBP21.31■■□□□ 1
COL2A1-202ENST00000380518 PLPPR3Q6T4P5 718 aa21.31■■□□□ 1
COL2A1-202ENST00000380518 IRX6P78412 446 aaPredicted RBP21.3■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms