RNA–Protein interactions for RNA: ENST00000590208.5

MBD1-222, Transcript of methyl-CpG binding domain protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MBD1, Length 2,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MBD1-222ENST00000590208 NISCHQ9Y2I1 1504 aa30.35■■■□□ 2.45
MBD1-222ENST00000590208 SHROOM4Q9ULL8 1493 aa26.89■■□□□ 1.89
MBD1-222ENST00000590208 SUPT5HO00267 1087 aaKnown RBP26.71■■□□□ 1.87
MBD1-222ENST00000590208 HRCP23327 699 aa26.63■■□□□ 1.85
MBD1-222ENST00000590208 MYO15BQ96JP2 1530 aa26.31■■□□□ 1.8
MBD1-222ENST00000590208 PCGF6Q9BYE7 350 aa26.27■■□□□ 1.8
MBD1-222ENST00000590208 PPARGC1BQ86YN6 1023 aaKnown RBP26.22■■□□□ 1.79
MBD1-222ENST00000590208 CHIC1Q5VXU3 224 aa26.16■■□□□ 1.78
MBD1-222ENST00000590208 ZCCHC6Q5VYS8 1495 aaKnown RBP25.78■■□□□ 1.72
MBD1-222ENST00000590208 CCDC180Q9P1Z9 1646 aa25.67■■□□□ 1.7
MBD1-222ENST00000590208 LOC105371045A0A1W2PR82 267 aa25.62■■□□□ 1.69
MBD1-222ENST00000590208 DCAF1Q9Y4B6 1507 aa25.56■■□□□ 1.68
MBD1-222ENST00000590208 DCAF8L2P0C7V8 631 aa25.47■■□□□ 1.67
MBD1-222ENST00000590208 TRIM26Q12899 539 aaPredicted RBP25.38■■□□□ 1.65
MBD1-222ENST00000590208 ABCC9O60706 1549 aa25.24■■□□□ 1.63
MBD1-222ENST00000590208 PELP1Q8IZL8 1130 aaKnown RBP25.22■■□□□ 1.63
MBD1-222ENST00000590208 SCAF1Q9H7N4 1312 aaKnown RBP25.13■■□□□ 1.61
MBD1-222ENST00000590208 ZEB1P37275 1124 aaPredicted RBP25.02■■□□□ 1.6
MBD1-222ENST00000590208 FAM9AQ8IZU1 332 aaPredicted RBP24.73■■□□□ 1.55
MBD1-222ENST00000590208 EHMT2Q96KQ7 1210 aa24.68■■□□□ 1.54
MBD1-222ENST00000590208 TRIM41Q8WV44 630 aa24.66■■□□□ 1.54
MBD1-222ENST00000590208 NEUROD1Q13562 356 aa24.53■■□□□ 1.52
MBD1-222ENST00000590208 ACIN1Q9UKV3 1341 aaKnown RBP24.53■■□□□ 1.52
MBD1-222ENST00000590208 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.43■■□□□ 1.5
MBD1-222ENST00000590208 RSF1Q96T23 1441 aaPredicted RBP24.41■■□□□ 1.5
MBD1-222ENST00000590208 GTF3C3Q9Y5Q9 886 aa24.36■■□□□ 1.49
MBD1-222ENST00000590208 CCER1Q8TC90 406 aaPredicted RBP24.32■■□□□ 1.48
MBD1-222ENST00000590208 RB1CC1Q8TDY2 1594 aa24.3■■□□□ 1.48
MBD1-222ENST00000590208 DIEXFQ68CQ4 756 aaKnown RBP24.24■■□□□ 1.47
MBD1-222ENST00000590208 CENPBP07199 599 aaPredicted RBP24.19■■□□□ 1.46
MBD1-222ENST00000590208 SCRIBQ14160 1630 aa24.13■■□□□ 1.45
MBD1-222ENST00000590208 MYT1Q01538 1121 aa24.11■■□□□ 1.45
MBD1-222ENST00000590208 NACADO15069 1562 aa24.09■■□□□ 1.45
MBD1-222ENST00000590208 TTBK1Q5TCY1 1321 aaPredicted RBP24.04■■□□□ 1.44
MBD1-222ENST00000590208 PABPN1Q86U42 306 aaKnown RBP eCLIP23.91■■□□□ 1.42
MBD1-222ENST00000590208 YTHDC1Q96MU7 727 aaKnown RBP23.9■■□□□ 1.42
MBD1-222ENST00000590208 CECR2Q9BXF3 1484 aa23.83■■□□□ 1.41
MBD1-222ENST00000590208 ZNF316A6NFI3 1004 aaPredicted RBP23.8■■□□□ 1.4
MBD1-222ENST00000590208 MROH2BQ7Z745 1585 aa23.76■■□□□ 1.39
MBD1-222ENST00000590208 UNC13AQ9UPW8 1703 aa23.69■■□□□ 1.38
MBD1-222ENST00000590208 MIER1Q8N108 512 aa23.69■■□□□ 1.38
MBD1-222ENST00000590208 WIZO95785 1651 aa23.67■■□□□ 1.38
MBD1-222ENST00000590208 WRNQ14191 1432 aaPredicted RBP eCLIP23.64■■□□□ 1.38
MBD1-222ENST00000590208 CEP162Q5TB80 1403 aa23.61■■□□□ 1.37
MBD1-222ENST00000590208 CCDC88BA6NC98 1476 aa23.52■■□□□ 1.36
MBD1-222ENST00000590208 EIF4G1Q04637 1599 aaKnown RBP23.51■■□□□ 1.35
MBD1-222ENST00000590208 ABCC8Q09428 1581 aa23.5■■□□□ 1.35
MBD1-222ENST00000590208 BICRAQ9NZM4 1560 aa23.46■■□□□ 1.35
MBD1-222ENST00000590208 SOGA1O94964 1423 aa23.45■■□□□ 1.34
MBD1-222ENST00000590208 HNRNPUL2Q1KMD3 747 aaKnown RBP23.45■■□□□ 1.34
MBD1-222ENST00000590208 UBTFP17480 764 aaKnown RBP23.44■■□□□ 1.34
MBD1-222ENST00000590208 TNIKQ9UKE5 1360 aa23.43■■□□□ 1.34
MBD1-222ENST00000590208 BAZ1AQ9NRL2 1556 aaPredicted RBP23.41■■□□□ 1.34
MBD1-222ENST00000590208 RUSC2Q8N2Y8 1516 aa23.34■■□□□ 1.33
MBD1-222ENST00000590208 CSRNP3Q8WYN3 585 aa23.33■■□□□ 1.33
MBD1-222ENST00000590208 SUPT16HQ9Y5B9 1047 aaKnown RBP23.22■■□□□ 1.31
MBD1-222ENST00000590208 GOLGA3Q08378 1498 aa23.15■■□□□ 1.3
MBD1-222ENST00000590208 TOP2AP11388 1531 aaKnown RBP23.13■■□□□ 1.29
MBD1-222ENST00000590208 EEA1Q15075 1411 aa23.13■■□□□ 1.29
MBD1-222ENST00000590208 SMARCA2P51531 1590 aa23.11■■□□□ 1.29
MBD1-222ENST00000590208 TSHZ2Q9NRE2 1034 aa23.07■■□□□ 1.28
MBD1-222ENST00000590208 RANGAP1P46060 587 aaPredicted RBP23.02■■□□□ 1.27
MBD1-222ENST00000590208 CLIP1P30622 1438 aa23.01■■□□□ 1.27
MBD1-222ENST00000590208 CLSPNQ9HAW4 1339 aa23■■□□□ 1.27
MBD1-222ENST00000590208 APLP2Q06481 763 aa22.98■■□□□ 1.27
MBD1-222ENST00000590208 ANP32EQ9BTT0 268 aa22.97■■□□□ 1.27
MBD1-222ENST00000590208 VPS8Q8N3P4 1428 aa22.94■■□□□ 1.26
MBD1-222ENST00000590208 SMARCA4P51532 1647 aa22.94■■□□□ 1.26
MBD1-222ENST00000590208 CEP164Q9UPV0 1460 aa22.91■■□□□ 1.26
MBD1-222ENST00000590208 DHX57Q6P158 1386 aaKnown RBP22.9■■□□□ 1.26
MBD1-222ENST00000590208 KCNH8Q96L42 1107 aa22.86■■□□□ 1.25
MBD1-222ENST00000590208 BCANQ96GW7 911 aa22.83■■□□□ 1.25
MBD1-222ENST00000590208 KIF21BO75037 1637 aa22.82■■□□□ 1.24
MBD1-222ENST00000590208 BCL11AQ9H165 835 aa22.8■■□□□ 1.24
MBD1-222ENST00000590208 RAPGEF2Q9Y4G8 1499 aa22.79■■□□□ 1.24
MBD1-222ENST00000590208 DNAJC5BQ9UF47 199 aa22.78■■□□□ 1.24
MBD1-222ENST00000590208 SYNJ1O43426 1573 aa22.76■■□□□ 1.23
MBD1-222ENST00000590208 KANK4Q5T7N3 995 aaPredicted RBP22.7■■□□□ 1.22
MBD1-222ENST00000590208 FKBP8Q14318 412 aa22.68■■□□□ 1.22
MBD1-222ENST00000590208 BAZ1BQ9UIG0 1483 aaKnown RBP22.68■■□□□ 1.22
MBD1-222ENST00000590208 CC2D2AQ9P2K1 1620 aa22.62■■□□□ 1.21
MBD1-222ENST00000590208 ITGAEP38570 1179 aa22.6■■□□□ 1.21
MBD1-222ENST00000590208 ATAD2BQ9ULI0 1458 aa22.57■■□□□ 1.2
MBD1-222ENST00000590208 RBM19Q9Y4C8 960 aaKnown RBP22.54■■□□□ 1.2
MBD1-222ENST00000590208 DDX10Q13206 875 aaKnown RBP22.53■■□□□ 1.2
MBD1-222ENST00000590208 ARAP1Q96P48 1450 aa22.52■■□□□ 1.2
MBD1-222ENST00000590208 RRBP1Q9P2E9 1410 aaKnown RBP22.49■■□□□ 1.19
MBD1-222ENST00000590208 CCNB3Q8WWL7 1395 aa22.44■■□□□ 1.18
MBD1-222ENST00000590208 TRIM52Q96A61 297 aa22.44■■□□□ 1.18
MBD1-222ENST00000590208 CUX2O14529 1486 aa22.42■■□□□ 1.18
MBD1-222ENST00000590208 NEFLP07196 543 aa22.41■■□□□ 1.18
MBD1-222ENST00000590208 RAB3GAP2Q9H2M9 1393 aa22.4■■□□□ 1.18
MBD1-222ENST00000590208 HIRIP3Q9BW71 556 aaPredicted RBP22.39■■□□□ 1.18
MBD1-222ENST00000590208 MAPKBP1O60336 1514 aa22.38■■□□□ 1.17
MBD1-222ENST00000590208 SIN3AQ96ST3 1273 aa22.37■■□□□ 1.17
MBD1-222ENST00000590208 MSH5O43196 834 aa22.36■■□□□ 1.17
MBD1-222ENST00000590208 PRXQ9BXM0 1461 aa22.34■■□□□ 1.17
MBD1-222ENST00000590208 WDR97A6NE52 1622 aa22.33■■□□□ 1.17
MBD1-222ENST00000590208 PPP1R15AO75807 674 aaPredicted RBP22.33■■□□□ 1.17
MBD1-222ENST00000590208 PEG3Q9GZU2 1588 aa22.32■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 82.8 ms