RNA–Protein interactions for RNA: ENST00000337331.9

NPHP3-201, Transcript of nephrocystin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP3, Length 4,362 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-201ENST00000337331 NISCHQ9Y2I1 1504 aa27.45■■□□□ 1.98
NPHP3-201ENST00000337331 DCAF8L2P0C7V8 631 aa27.44■■□□□ 1.98
NPHP3-201ENST00000337331 SUPT5HO00267 1087 aaKnown RBP26.55■■□□□ 1.84
NPHP3-201ENST00000337331 PELP1Q8IZL8 1130 aaKnown RBP26.54■■□□□ 1.84
NPHP3-201ENST00000337331 SHROOM4Q9ULL8 1493 aa26.09■■□□□ 1.77
NPHP3-201ENST00000337331 PCGF6Q9BYE7 350 aa25.97■■□□□ 1.75
NPHP3-201ENST00000337331 MYT1Q01538 1121 aa25.9■■□□□ 1.74
NPHP3-201ENST00000337331 HRCP23327 699 aa25.87■■□□□ 1.73
NPHP3-201ENST00000337331 PPARGC1BQ86YN6 1023 aaKnown RBP25.61■■□□□ 1.69
NPHP3-201ENST00000337331 EHMT2Q96KQ7 1210 aa25.5■■□□□ 1.67
NPHP3-201ENST00000337331 FAM9AQ8IZU1 332 aaPredicted RBP24.99■■□□□ 1.59
NPHP3-201ENST00000337331 CENPBP07199 599 aaPredicted RBP24.96■■□□□ 1.59
NPHP3-201ENST00000337331 ZEB1P37275 1124 aaPredicted RBP24.86■■□□□ 1.57
NPHP3-201ENST00000337331 APLP2Q06481 763 aa24.69■■□□□ 1.54
NPHP3-201ENST00000337331 TTBK1Q5TCY1 1321 aaPredicted RBP24.67■■□□□ 1.54
NPHP3-201ENST00000337331 SCAF1Q9H7N4 1312 aaKnown RBP24.66■■□□□ 1.54
NPHP3-201ENST00000337331 YTHDC1Q96MU7 727 aaKnown RBP24.52■■□□□ 1.52
NPHP3-201ENST00000337331 TRIM26Q12899 539 aaPredicted RBP24.51■■□□□ 1.51
NPHP3-201ENST00000337331 GTF3C3Q9Y5Q9 886 aa24.51■■□□□ 1.51
NPHP3-201ENST00000337331 TRIM41Q8WV44 630 aa24.49■■□□□ 1.51
NPHP3-201ENST00000337331 CCER1Q8TC90 406 aaPredicted RBP24.3■■□□□ 1.48
NPHP3-201ENST00000337331 ACIN1Q9UKV3 1341 aaKnown RBP24.3■■□□□ 1.48
NPHP3-201ENST00000337331 RANGAP1P46060 587 aaPredicted RBP24.25■■□□□ 1.47
NPHP3-201ENST00000337331 LOC105371045A0A1W2PR82 267 aa24.25■■□□□ 1.47
NPHP3-201ENST00000337331 CHIC1Q5VXU3 224 aa24.22■■□□□ 1.47
NPHP3-201ENST00000337331 NEUROD1Q13562 356 aa24.1■■□□□ 1.45
NPHP3-201ENST00000337331 UBTFP17480 764 aaKnown RBP24.07■■□□□ 1.44
NPHP3-201ENST00000337331 DIEXFQ68CQ4 756 aaKnown RBP24.02■■□□□ 1.44
NPHP3-201ENST00000337331 ERICH6Q7L0X2 663 aa23.94■■□□□ 1.42
NPHP3-201ENST00000337331 ATP1B4Q9UN42 357 aaPredicted RBP23.84■■□□□ 1.41
NPHP3-201ENST00000337331 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.78■■□□□ 1.4
NPHP3-201ENST00000337331 BCL11AQ9H165 835 aa23.65■■□□□ 1.38
NPHP3-201ENST00000337331 ABCC9O60706 1549 aa23.46■■□□□ 1.35
NPHP3-201ENST00000337331 NEFLP07196 543 aa23.44■■□□□ 1.34
NPHP3-201ENST00000337331 MYO15BQ96JP2 1530 aa23.4■■□□□ 1.34
NPHP3-201ENST00000337331 HNRNPUL2Q1KMD3 747 aaKnown RBP23.36■■□□□ 1.33
NPHP3-201ENST00000337331 BCANQ96GW7 911 aa23.35■■□□□ 1.33
NPHP3-201ENST00000337331 ITGAEP38570 1179 aa23.34■■□□□ 1.33
NPHP3-201ENST00000337331 ANP32EQ9BTT0 268 aa23.34■■□□□ 1.33
NPHP3-201ENST00000337331 DCAF1Q9Y4B6 1507 aa23.32■■□□□ 1.32
NPHP3-201ENST00000337331 ZNF316A6NFI3 1004 aaPredicted RBP23.22■■□□□ 1.31
NPHP3-201ENST00000337331 CCDC180Q9P1Z9 1646 aa23.17■■□□□ 1.3
NPHP3-201ENST00000337331 CSRNP3Q8WYN3 585 aa23■■□□□ 1.27
NPHP3-201ENST00000337331 MIER1Q8N108 512 aa22.99■■□□□ 1.27
NPHP3-201ENST00000337331 POLR3GLQ9BT43 218 aa22.92■■□□□ 1.26
NPHP3-201ENST00000337331 ZCCHC6Q5VYS8 1495 aaKnown RBP22.85■■□□□ 1.25
NPHP3-201ENST00000337331 CNGB1Q14028 1251 aaPredicted RBP22.85■■□□□ 1.25
NPHP3-201ENST00000337331 RTL5Q5HYW3 569 aaPredicted RBP22.81■■□□□ 1.24
NPHP3-201ENST00000337331 FKBP8Q14318 412 aa22.78■■□□□ 1.24
NPHP3-201ENST00000337331 PABPN1Q86U42 306 aaKnown RBP eCLIP22.77■■□□□ 1.24
NPHP3-201ENST00000337331 CLSPNQ9HAW4 1339 aa22.77■■□□□ 1.24
NPHP3-201ENST00000337331 PRKCSHP14314 528 aaPredicted RBP22.75■■□□□ 1.23
NPHP3-201ENST00000337331 SUPT16HQ9Y5B9 1047 aaKnown RBP22.73■■□□□ 1.23
NPHP3-201ENST00000337331 FAM50AQ14320 339 aaKnown RBP22.69■■□□□ 1.22
NPHP3-201ENST00000337331 EIF5BO60841 1220 aaKnown RBP22.68■■□□□ 1.22
NPHP3-201ENST00000337331 CDK11AQ9UQ88 783 aaPredicted RBP22.66■■□□□ 1.22
NPHP3-201ENST00000337331 TSHZ2Q9NRE2 1034 aa22.66■■□□□ 1.22
NPHP3-201ENST00000337331 MYT1LQ9UL68 1186 aa22.59■■□□□ 1.21
NPHP3-201ENST00000337331 NBR1Q14596 966 aa22.55■■□□□ 1.2
NPHP3-201ENST00000337331 DAXXQ9UER7 740 aaPredicted RBP22.52■■□□□ 1.2
NPHP3-201ENST00000337331 TRIM52Q96A61 297 aa22.46■■□□□ 1.19
NPHP3-201ENST00000337331 SCRIBQ14160 1630 aa22.44■■□□□ 1.18
NPHP3-201ENST00000337331 RBM19Q9Y4C8 960 aaKnown RBP22.41■■□□□ 1.18
NPHP3-201ENST00000337331 RTN4Q9NQC3 1192 aaKnown RBP22.38■■□□□ 1.17
NPHP3-201ENST00000337331 DEKP35659 375 aaKnown RBP22.34■■□□□ 1.17
NPHP3-201ENST00000337331 ANP32CO43423 234 aa22.33■■□□□ 1.17
NPHP3-201ENST00000337331 P3H3Q8IVL6 736 aa22.26■■□□□ 1.15
NPHP3-201ENST00000337331 ZNF326Q5BKZ1 582 aaKnown RBP22.24■■□□□ 1.15
NPHP3-201ENST00000337331 SLC4A1APQ9BWU0 796 aaKnown RBP22.24■■□□□ 1.15
NPHP3-201ENST00000337331 CCDC136Q96JN2 1154 aa22.22■■□□□ 1.15
NPHP3-201ENST00000337331 IRX6P78412 446 aaPredicted RBP22.19■■□□□ 1.14
NPHP3-201ENST00000337331 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.18■■□□□ 1.14
NPHP3-201ENST00000337331 RB1CC1Q8TDY2 1594 aa22.17■■□□□ 1.14
NPHP3-201ENST00000337331 ANP32AP39687 249 aaKnown RBP22.16■■□□□ 1.14
NPHP3-201ENST00000337331 ANO8Q9HCE9 1232 aaPredicted RBP22.15■■□□□ 1.14
NPHP3-201ENST00000337331 NACADO15069 1562 aa22.12■■□□□ 1.13
NPHP3-201ENST00000337331 DDX10Q13206 875 aaKnown RBP22.09■■□□□ 1.13
NPHP3-201ENST00000337331 ARID3CA6NKF2 412 aa22.08■■□□□ 1.12
NPHP3-201ENST00000337331 NPM2Q86SE8 214 aaKnown RBP22.07■■□□□ 1.12
NPHP3-201ENST00000337331 ZBTB47Q9UFB7 747 aaPredicted RBP22.03■■□□□ 1.12
NPHP3-201ENST00000337331 FBLN2P98095 1184 aa22.02■■□□□ 1.12
NPHP3-201ENST00000337331 GLIPR1L2Q4G1C9 344 aa22.01■■□□□ 1.11
NPHP3-201ENST00000337331 HNRNPUQ00839 825 aaKnown RBP eCLIP21.96■■□□□ 1.11
NPHP3-201ENST00000337331 NOP58Q9Y2X3 529 aaKnown RBP21.89■■□□□ 1.1
NPHP3-201ENST00000337331 SALL2Q9Y467 1007 aaPredicted RBP21.85■■□□□ 1.09
NPHP3-201ENST00000337331 ZNF777Q9ULD5 760 aaPredicted RBP21.85■■□□□ 1.09
NPHP3-201ENST00000337331 TONSLQ96HA7 1378 aa21.84■■□□□ 1.09
NPHP3-201ENST00000337331 HIRIP3Q9BW71 556 aaPredicted RBP21.78■■□□□ 1.08
NPHP3-201ENST00000337331 ERICH6BQ5W0A0 696 aa21.77■■□□□ 1.08
NPHP3-201ENST00000337331 RSF1Q96T23 1441 aaPredicted RBP21.75■■□□□ 1.07
NPHP3-201ENST00000337331 KCNH8Q96L42 1107 aa21.75■■□□□ 1.07
NPHP3-201ENST00000337331 NEFMP07197 916 aa21.72■■□□□ 1.07
NPHP3-201ENST00000337331 FAM9BQ8IZU0 186 aa21.71■■□□□ 1.07
NPHP3-201ENST00000337331 LAS1LQ9Y4W2 734 aaKnown RBP21.71■■□□□ 1.07
NPHP3-201ENST00000337331 CLIP1P30622 1438 aa21.69■■□□□ 1.06
NPHP3-201ENST00000337331 CHIC2Q9UKJ5 165 aa21.69■■□□□ 1.06
NPHP3-201ENST00000337331 B4GALNT3Q6L9W6 998 aa21.66■■□□□ 1.06
NPHP3-201ENST00000337331 CANXP27824 592 aaKnown RBP21.66■■□□□ 1.06
NPHP3-201ENST00000337331 FANCIQ9NVI1 1328 aa21.62■■□□□ 1.05
NPHP3-201ENST00000337331 CEP162Q5TB80 1403 aa21.61■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms