Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 PVR-205ENST00000425690 3325 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
HOXA1P49639 PTGR2-204ENST00000555228 2543 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
HOXA1P49639 FAM189A1-201ENST00000261275 4705 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
HOXA1P49639 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC12.16□□□□□ -0.46
HOXA1P49639 PACSIN2-202ENST00000337959 3149 ntTSL 5 BASIC12.16□□□□□ -0.46
HOXA1P49639 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
HOXA1P49639 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
HOXA1P49639 APLP2-201ENST00000263574 3727 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
HOXA1P49639 SH2D5-201ENST00000375031 3705 ntTSL 2 BASIC12.16□□□□□ -0.46
HOXA1P49639 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC12.16□□□□□ -0.46
HOXA1P49639 PDE4A-204ENST00000440014 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
HOXA1P49639 COPS7B-223ENST00000611614 2468 ntTSL 3 BASIC12.16□□□□□ -0.46
HOXA1P49639 PTPRVP-205ENST00000641549 5067 ntBASIC12.16□□□□□ -0.46
HOXA1P49639 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
HOXA1P49639 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HOXA1P49639 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
HOXA1P49639 SMC6-201ENST00000351948 5173 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HOXA1P49639 CPNE1-201ENST00000317677 1961 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
HOXA1P49639 AL157414.3-201ENST00000624276 1954 ntBASIC12.16□□□□□ -0.46
HOXA1P49639 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
HOXA1P49639 TMEM130-201ENST00000339375 3015 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HOXA1P49639 RAPGEF4-AS1-202ENST00000435328 4625 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
HOXA1P49639 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
HOXA1P49639 ATG9A-204ENST00000409422 2512 ntTSL 5 BASIC12.15□□□□□ -0.46
HOXA1P49639 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
HOXA1P49639 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC12.15□□□□□ -0.46
HOXA1P49639 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
HOXA1P49639 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
HOXA1P49639 NIN-206ENST00000453196 6785 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
HOXA1P49639 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC12.15□□□□□ -0.46
HOXA1P49639 ABI2-202ENST00000261017 6484 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
HOXA1P49639 UNC13B-206ENST00000617908 6432 ntTSL 5 BASIC12.15□□□□□ -0.46
HOXA1P49639 UNC13B-207ENST00000619578 6426 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
HOXA1P49639 FCHSD1-209ENST00000522783 2477 ntTSL 5 BASIC12.15□□□□□ -0.46
HOXA1P49639 SNED1-205ENST00000405547 7986 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
HOXA1P49639 VWA8-201ENST00000281496 3475 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
HOXA1P49639 DFFB-205ENST00000378209 3028 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
HOXA1P49639 CDIP1-201ENST00000399599 3009 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
HOXA1P49639 USP47-202ENST00000339865 7775 ntTSL 2 BASIC12.15□□□□□ -0.46
HOXA1P49639 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
HOXA1P49639 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
HOXA1P49639 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
HOXA1P49639 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC12.15□□□□□ -0.46
HOXA1P49639 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC12.15□□□□□ -0.46
HOXA1P49639 ABCB8-202ENST00000358849 4683 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
HOXA1P49639 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
HOXA1P49639 CNN2P11-201ENST00000429351 262 ntBASIC12.15□□□□□ -0.46
HOXA1P49639 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
HOXA1P49639 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC12.15□□□□□ -0.46
HOXA1P49639 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC12.15□□□□□ -0.46
HOXA1P49639 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC12.15□□□□□ -0.46
HOXA1P49639 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC12.15□□□□□ -0.46
HOXA1P49639 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC12.15□□□□□ -0.46
HOXA1P49639 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
HOXA1P49639 AC000095.1-201ENST00000603208 874 ntBASIC12.15□□□□□ -0.46
HOXA1P49639 MAMDC4-201ENST00000317446 3658 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
HOXA1P49639 BCRP2-203ENST00000461808 1832 ntTSL 2 BASIC12.15□□□□□ -0.46
HOXA1P49639 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC12.15□□□□□ -0.46
HOXA1P49639 CACNG3-201ENST00000005284 3088 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
HOXA1P49639 CNTLN-201ENST00000380641 4871 ntAPPRIS ALT2 TSL 2 BASIC12.15□□□□□ -0.46
HOXA1P49639 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.46
HOXA1P49639 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
HOXA1P49639 TBC1D22B-201ENST00000373491 3462 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
HOXA1P49639 CTNNB1-201ENST00000349496 3737 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
HOXA1P49639 PRICKLE1-203ENST00000455697 4277 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
HOXA1P49639 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
HOXA1P49639 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC12.15□□□□□ -0.46
HOXA1P49639 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
HOXA1P49639 TRMT1L-201ENST00000367506 4392 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
HOXA1P49639 NINL-203ENST00000422516 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
HOXA1P49639 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC12.15□□□□□ -0.46
HOXA1P49639 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC12.15□□□□□ -0.46
HOXA1P49639 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
HOXA1P49639 ITGA3-201ENST00000007722 3665 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.47
HOXA1P49639 ZNF799-202ENST00000430385 2583 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.47
HOXA1P49639 NME1-209ENST00000511355 1645 ntTSL 5 BASIC12.15□□□□□ -0.47
HOXA1P49639 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC12.15□□□□□ -0.47
HOXA1P49639 HLCS-201ENST00000336648 6010 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HOXA1P49639 ATP2B2-210ENST00000638646 3465 ntTSL 5 BASIC12.14□□□□□ -0.47
HOXA1P49639 NPAS4-201ENST00000311034 3303 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HOXA1P49639 LMBR1L-201ENST00000267102 2934 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HOXA1P49639 AJAP1-202ENST00000378191 11666 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HOXA1P49639 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC12.14□□□□□ -0.47
HOXA1P49639 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
HOXA1P49639 KRT8P24-201ENST00000560290 1559 ntBASIC12.14□□□□□ -0.47
HOXA1P49639 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
HOXA1P49639 GUCY1B3-205ENST00000505764 2456 ntTSL 2 BASIC12.14□□□□□ -0.47
HOXA1P49639 BAG6-247ENST00000439687 3104 ntTSL 2 BASIC12.14□□□□□ -0.47
HOXA1P49639 PREX1-201ENST00000371941 6636 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HOXA1P49639 FAM212B-201ENST00000357260 5980 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HOXA1P49639 NR1H3-217ENST00000467728 2731 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HOXA1P49639 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HOXA1P49639 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC12.14□□□□□ -0.47
HOXA1P49639 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC12.14□□□□□ -0.47
HOXA1P49639 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
HOXA1P49639 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC12.14□□□□□ -0.47
HOXA1P49639 RHPN1-AS1-201ENST00000518049 1918 ntBASIC12.14□□□□□ -0.47
HOXA1P49639 TMEM147-AS1-205ENST00000590717 3300 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
HOXA1P49639 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HOXA1P49639 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms