RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 DCAF8L2P0C7V8 631 aa21.49■■□□□ 1.03
USP47-202ENST00000339865 PELP1Q8IZL8 1130 aaKnown RBP21.27■■□□□ 1
USP47-202ENST00000339865 ERICH6Q7L0X2 663 aa20.65■□□□□ 0.9
USP47-202ENST00000339865 CCER1Q8TC90 406 aaPredicted RBP20.29■□□□□ 0.84
USP47-202ENST00000339865 MYT1Q01538 1121 aa20.24■□□□□ 0.83
USP47-202ENST00000339865 EHMT2Q96KQ7 1210 aa20.21■□□□□ 0.83
USP47-202ENST00000339865 SUPT5HO00267 1087 aaKnown RBP20.04■□□□□ 0.8
USP47-202ENST00000339865 CENPBP07199 599 aaPredicted RBP19.91■□□□□ 0.78
USP47-202ENST00000339865 APLP2Q06481 763 aa19.74■□□□□ 0.75
USP47-202ENST00000339865 FAM9AQ8IZU1 332 aaPredicted RBP19.63■□□□□ 0.73
USP47-202ENST00000339865 NEFLP07196 543 aa19.63■□□□□ 0.73
USP47-202ENST00000339865 TTBK1Q5TCY1 1321 aaPredicted RBP19.62■□□□□ 0.73
USP47-202ENST00000339865 PCGF6Q9BYE7 350 aa19.58■□□□□ 0.72
USP47-202ENST00000339865 DAXXQ9UER7 740 aaPredicted RBP19.49■□□□□ 0.71
USP47-202ENST00000339865 YTHDC1Q96MU7 727 aaKnown RBP19.48■□□□□ 0.71
USP47-202ENST00000339865 SHROOM4Q9ULL8 1493 aa19.26■□□□□ 0.67
USP47-202ENST00000339865 ATP1B4Q9UN42 357 aaPredicted RBP19.25■□□□□ 0.67
USP47-202ENST00000339865 CHIC1Q5VXU3 224 aa19.24■□□□□ 0.67
USP47-202ENST00000339865 MYT1LQ9UL68 1186 aa19.19■□□□□ 0.66
USP47-202ENST00000339865 ZEB1P37275 1124 aaPredicted RBP19.19■□□□□ 0.66
USP47-202ENST00000339865 RANGAP1P46060 587 aaPredicted RBP19.15■□□□□ 0.66
USP47-202ENST00000339865 RTL5Q5HYW3 569 aaPredicted RBP19.01■□□□□ 0.63
USP47-202ENST00000339865 ZNF316A6NFI3 1004 aaPredicted RBP18.95■□□□□ 0.62
USP47-202ENST00000339865 CLSPNQ9HAW4 1339 aa18.76■□□□□ 0.59
USP47-202ENST00000339865 POLR3GLQ9BT43 218 aa18.75■□□□□ 0.59
USP47-202ENST00000339865 SLC4A1APQ9BWU0 796 aaKnown RBP18.75■□□□□ 0.59
USP47-202ENST00000339865 CNGB1Q14028 1251 aaPredicted RBP18.7■□□□□ 0.58
USP47-202ENST00000339865 EIF5BO60841 1220 aaKnown RBP18.55■□□□□ 0.56
USP47-202ENST00000339865 PPARGC1BQ86YN6 1023 aaKnown RBP18.51■□□□□ 0.55
USP47-202ENST00000339865 UBTFP17480 764 aaKnown RBP18.5■□□□□ 0.55
USP47-202ENST00000339865 SLC24A1O60721 1099 aa18.49■□□□□ 0.55
USP47-202ENST00000339865 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.39■□□□□ 0.53
USP47-202ENST00000339865 HNRNPUL2Q1KMD3 747 aaKnown RBP18.39■□□□□ 0.53
USP47-202ENST00000339865 HRCP23327 699 aa18.37■□□□□ 0.53
USP47-202ENST00000339865 TRIM41Q8WV44 630 aa18.36■□□□□ 0.53
USP47-202ENST00000339865 GLIPR1L2Q4G1C9 344 aa18.33■□□□□ 0.52
USP47-202ENST00000339865 ITGAEP38570 1179 aa18.29■□□□□ 0.52
USP47-202ENST00000339865 BCL11AQ9H165 835 aa18.28■□□□□ 0.52
USP47-202ENST00000339865 BCANQ96GW7 911 aa18.26■□□□□ 0.51
USP47-202ENST00000339865 PLPPR3Q6T4P5 718 aa18.23■□□□□ 0.51
USP47-202ENST00000339865 CDK11AQ9UQ88 783 aaPredicted RBP18.21■□□□□ 0.51
USP47-202ENST00000339865 ZBTB47Q9UFB7 747 aaPredicted RBP18.19■□□□□ 0.5
USP47-202ENST00000339865 TRIM26Q12899 539 aaPredicted RBP18.18■□□□□ 0.5
USP47-202ENST00000339865 DIEXFQ68CQ4 756 aaKnown RBP18.12■□□□□ 0.49
USP47-202ENST00000339865 ANP32BQ92688 251 aaKnown RBP18.1■□□□□ 0.49
USP47-202ENST00000339865 GTF3C3Q9Y5Q9 886 aa18.07■□□□□ 0.48
USP47-202ENST00000339865 ANP32AP39687 249 aaKnown RBP18■□□□□ 0.47
USP47-202ENST00000339865 NPM2Q86SE8 214 aaKnown RBP17.96■□□□□ 0.47
USP47-202ENST00000339865 A0A0G2JS52 829 aa17.93■□□□□ 0.46
USP47-202ENST00000339865 CANXP27824 592 aaKnown RBP17.91■□□□□ 0.46
USP47-202ENST00000339865 HSP90AA1P07900 732 aaKnown RBP17.88■□□□□ 0.45
USP47-202ENST00000339865 ARXQ96QS3 562 aa17.86■□□□□ 0.45
USP47-202ENST00000339865 NBR1Q14596 966 aa17.78■□□□□ 0.44
USP47-202ENST00000339865 NCBP3Q53F19 620 aaKnown RBP17.75■□□□□ 0.43
USP47-202ENST00000339865 SCAF1Q9H7N4 1312 aaKnown RBP17.74■□□□□ 0.43
USP47-202ENST00000339865 ANP32CO43423 234 aa17.74■□□□□ 0.43
USP47-202ENST00000339865 NEUROD1Q13562 356 aa17.68■□□□□ 0.42
USP47-202ENST00000339865 TULP1O00294 542 aaPredicted RBP17.67■□□□□ 0.42
USP47-202ENST00000339865 TNNT2P45379 298 aaPredicted RBP17.67■□□□□ 0.42
USP47-202ENST00000339865 UPF2Q9HAU5 1272 aaKnown RBP17.61■□□□□ 0.41
USP47-202ENST00000339865 CDK11BP21127 795 aaKnown RBP17.61■□□□□ 0.41
USP47-202ENST00000339865 PLEKHG5O94827 1062 aa17.6■□□□□ 0.41
USP47-202ENST00000339865 NEFMP07197 916 aa17.6■□□□□ 0.41
USP47-202ENST00000339865 ZNF326Q5BKZ1 582 aaKnown RBP17.58■□□□□ 0.4
USP47-202ENST00000339865 LOC105371045A0A1W2PR82 267 aa17.57■□□□□ 0.4
USP47-202ENST00000339865 TRIM52Q96A61 297 aa17.56■□□□□ 0.4
USP47-202ENST00000339865 FAM50AQ14320 339 aaKnown RBP17.56■□□□□ 0.4
USP47-202ENST00000339865 AMER1Q5JTC6 1135 aaPredicted RBP17.49■□□□□ 0.39
USP47-202ENST00000339865 TRIM44Q96DX7 344 aaPredicted RBP17.47■□□□□ 0.39
USP47-202ENST00000339865 ESF1Q9H501 851 aaKnown RBP17.46■□□□□ 0.39
USP47-202ENST00000339865 FKBP8Q14318 412 aa17.46■□□□□ 0.39
USP47-202ENST00000339865 ACIN1Q9UKV3 1341 aaKnown RBP17.45■□□□□ 0.38
USP47-202ENST00000339865 SENP3Q9H4L4 574 aaPredicted RBP17.45■□□□□ 0.38
USP47-202ENST00000339865 NISCHQ9Y2I1 1504 aa17.45■□□□□ 0.38
USP47-202ENST00000339865 FBLN2P98095 1184 aa17.42■□□□□ 0.38
USP47-202ENST00000339865 DNTTIP2Q5QJE6 756 aaKnown RBP17.36■□□□□ 0.37
USP47-202ENST00000339865 ZBTB7CA1YPR0 619 aa17.29■□□□□ 0.36
USP47-202ENST00000339865 NAP1L5Q96NT1 182 aaPredicted RBP17.28■□□□□ 0.36
USP47-202ENST00000339865 RTN4Q9NQC3 1192 aaKnown RBP17.28■□□□□ 0.36
USP47-202ENST00000339865 STAG3Q9UJ98 1225 aa17.27■□□□□ 0.36
USP47-202ENST00000339865 SALL2Q9Y467 1007 aaPredicted RBP17.26■□□□□ 0.35
USP47-202ENST00000339865 CCDC136Q96JN2 1154 aa17.25■□□□□ 0.35
USP47-202ENST00000339865 PTMAP06454 111 aaKnown RBP17.24■□□□□ 0.35
USP47-202ENST00000339865 NCLP19338 710 aaKnown RBP17.19■□□□□ 0.34
USP47-202ENST00000339865 TPRNQ4KMQ1 711 aa17.19■□□□□ 0.34
USP47-202ENST00000339865 HNRNPUQ00839 825 aaKnown RBP eCLIP17.18■□□□□ 0.34
USP47-202ENST00000339865 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.18■□□□□ 0.34
USP47-202ENST00000339865 FAM9BQ8IZU0 186 aa17.14■□□□□ 0.33
USP47-202ENST00000339865 HAP1P54257 671 aaPredicted RBP17.14■□□□□ 0.33
USP47-202ENST00000339865 ZRSR1Q15695 479 aaKnown RBP17.13■□□□□ 0.33
USP47-202ENST00000339865 NPHP1O15259 732 aa17.13■□□□□ 0.33
USP47-202ENST00000339865 ERICH6BQ5W0A0 696 aa17.12■□□□□ 0.33
USP47-202ENST00000339865 GOLGA6L22H0YM25 854 aa17.1■□□□□ 0.33
USP47-202ENST00000339865 ANP32EQ9BTT0 268 aa17.1■□□□□ 0.33
USP47-202ENST00000339865 KRI1Q8N9T8 703 aaKnown RBP17.09■□□□□ 0.33
USP47-202ENST00000339865 BECN1Q14457 450 aa17.09■□□□□ 0.33
USP47-202ENST00000339865 CHGAP10645 457 aaKnown RBP17.07■□□□□ 0.32
USP47-202ENST00000339865 C14orf37Q86TY3 774 aa17.06■□□□□ 0.32
USP47-202ENST00000339865 PRM3Q9NNZ6 103 aa17.05■□□□□ 0.32
USP47-202ENST00000339865 IRX6P78412 446 aaPredicted RBP17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms