RNA–Protein interactions for RNA: ENST00000405547.7

SNED1-205, Transcript of sushi, nidogen and EGF like domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SNED1, Length 7,986 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNED1-205ENST00000405547 DCAF8L2P0C7V8 631 aa22.38■■□□□ 1.17
SNED1-205ENST00000405547 NISCHQ9Y2I1 1504 aa22.18■■□□□ 1.14
SNED1-205ENST00000405547 SUPT5HO00267 1087 aaKnown RBP21.74■■□□□ 1.07
SNED1-205ENST00000405547 SHROOM4Q9ULL8 1493 aa21.3■■□□□ 1
SNED1-205ENST00000405547 PELP1Q8IZL8 1130 aaKnown RBP21.21■□□□□ 0.99
SNED1-205ENST00000405547 EHMT2Q96KQ7 1210 aa20.79■□□□□ 0.92
SNED1-205ENST00000405547 PCGF6Q9BYE7 350 aa20.75■□□□□ 0.91
SNED1-205ENST00000405547 APLP2Q06481 763 aa20.71■□□□□ 0.91
SNED1-205ENST00000405547 ZEB1P37275 1124 aaPredicted RBP20.65■□□□□ 0.9
SNED1-205ENST00000405547 CENPBP07199 599 aaPredicted RBP20.55■□□□□ 0.88
SNED1-205ENST00000405547 FAM9AQ8IZU1 332 aaPredicted RBP20.42■□□□□ 0.86
SNED1-205ENST00000405547 MYT1Q01538 1121 aa20.33■□□□□ 0.85
SNED1-205ENST00000405547 CCER1Q8TC90 406 aaPredicted RBP20.3■□□□□ 0.84
SNED1-205ENST00000405547 TRIM41Q8WV44 630 aa20.24■□□□□ 0.83
SNED1-205ENST00000405547 TTBK1Q5TCY1 1321 aaPredicted RBP20.2■□□□□ 0.82
SNED1-205ENST00000405547 ERICH6Q7L0X2 663 aa20.16■□□□□ 0.82
SNED1-205ENST00000405547 TRIM26Q12899 539 aaPredicted RBP19.99■□□□□ 0.79
SNED1-205ENST00000405547 HRCP23327 699 aa19.95■□□□□ 0.78
SNED1-205ENST00000405547 NEFLP07196 543 aa19.93■□□□□ 0.78
SNED1-205ENST00000405547 UBTFP17480 764 aaKnown RBP19.92■□□□□ 0.78
SNED1-205ENST00000405547 RANGAP1P46060 587 aaPredicted RBP19.83■□□□□ 0.77
SNED1-205ENST00000405547 YTHDC1Q96MU7 727 aaKnown RBP19.8■□□□□ 0.76
SNED1-205ENST00000405547 ATP1B4Q9UN42 357 aaPredicted RBP19.7■□□□□ 0.74
SNED1-205ENST00000405547 PPARGC1BQ86YN6 1023 aaKnown RBP19.58■□□□□ 0.73
SNED1-205ENST00000405547 CHIC1Q5VXU3 224 aa19.56■□□□□ 0.72
SNED1-205ENST00000405547 LOC105371045A0A1W2PR82 267 aa19.49■□□□□ 0.71
SNED1-205ENST00000405547 DIEXFQ68CQ4 756 aaKnown RBP19.33■□□□□ 0.68
SNED1-205ENST00000405547 DAXXQ9UER7 740 aaPredicted RBP19.29■□□□□ 0.68
SNED1-205ENST00000405547 HNRNPUL2Q1KMD3 747 aaKnown RBP19.23■□□□□ 0.67
SNED1-205ENST00000405547 ITGAEP38570 1179 aa19.2■□□□□ 0.66
SNED1-205ENST00000405547 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.18■□□□□ 0.66
SNED1-205ENST00000405547 POLR3GLQ9BT43 218 aa19.02■□□□□ 0.64
SNED1-205ENST00000405547 RTL5Q5HYW3 569 aaPredicted RBP18.99■□□□□ 0.63
SNED1-205ENST00000405547 GTF3C3Q9Y5Q9 886 aa18.98■□□□□ 0.63
SNED1-205ENST00000405547 ZNF316A6NFI3 1004 aaPredicted RBP18.84■□□□□ 0.61
SNED1-205ENST00000405547 FAM50AQ14320 339 aaKnown RBP18.79■□□□□ 0.6
SNED1-205ENST00000405547 ACIN1Q9UKV3 1341 aaKnown RBP18.79■□□□□ 0.6
SNED1-205ENST00000405547 CNGB1Q14028 1251 aaPredicted RBP18.78■□□□□ 0.6
SNED1-205ENST00000405547 ANP32CO43423 234 aa18.77■□□□□ 0.6
SNED1-205ENST00000405547 CDK11AQ9UQ88 783 aaPredicted RBP18.75■□□□□ 0.59
SNED1-205ENST00000405547 CLSPNQ9HAW4 1339 aa18.75■□□□□ 0.59
SNED1-205ENST00000405547 MYT1LQ9UL68 1186 aa18.74■□□□□ 0.59
SNED1-205ENST00000405547 DCAF1Q9Y4B6 1507 aa18.73■□□□□ 0.59
SNED1-205ENST00000405547 NEUROD1Q13562 356 aa18.69■□□□□ 0.58
SNED1-205ENST00000405547 BCANQ96GW7 911 aa18.65■□□□□ 0.58
SNED1-205ENST00000405547 TRIM52Q96A61 297 aa18.62■□□□□ 0.57
SNED1-205ENST00000405547 SLC4A1APQ9BWU0 796 aaKnown RBP18.56■□□□□ 0.56
SNED1-205ENST00000405547 ABCC9O60706 1549 aa18.49■□□□□ 0.55
SNED1-205ENST00000405547 CSRNP3Q8WYN3 585 aa18.46■□□□□ 0.55
SNED1-205ENST00000405547 ANP32AP39687 249 aaKnown RBP18.45■□□□□ 0.54
SNED1-205ENST00000405547 CCDC180Q9P1Z9 1646 aa18.43■□□□□ 0.54
SNED1-205ENST00000405547 ZCCHC6Q5VYS8 1495 aaKnown RBP18.41■□□□□ 0.54
SNED1-205ENST00000405547 ZNF326Q5BKZ1 582 aaKnown RBP18.36■□□□□ 0.53
SNED1-205ENST00000405547 SCRIBQ14160 1630 aa18.35■□□□□ 0.53
SNED1-205ENST00000405547 PABPN1Q86U42 306 aaKnown RBP eCLIP18.34■□□□□ 0.53
SNED1-205ENST00000405547 ZBTB47Q9UFB7 747 aaPredicted RBP18.32■□□□□ 0.52
SNED1-205ENST00000405547 FKBP8Q14318 412 aa18.3■□□□□ 0.52
SNED1-205ENST00000405547 CANXP27824 592 aaKnown RBP18.26■□□□□ 0.51
SNED1-205ENST00000405547 TONSLQ96HA7 1378 aa18.25■□□□□ 0.51
SNED1-205ENST00000405547 SCAF1Q9H7N4 1312 aaKnown RBP18.21■□□□□ 0.51
SNED1-205ENST00000405547 HNRNPUQ00839 825 aaKnown RBP eCLIP18.18■□□□□ 0.5
SNED1-205ENST00000405547 NEFMP07197 916 aa18.14■□□□□ 0.5
SNED1-205ENST00000405547 DDX10Q13206 875 aaKnown RBP18.14■□□□□ 0.49
SNED1-205ENST00000405547 P3H3Q8IVL6 736 aa18.13■□□□□ 0.49
SNED1-205ENST00000405547 NPM2Q86SE8 214 aaKnown RBP18.13■□□□□ 0.49
SNED1-205ENST00000405547 MYO15BQ96JP2 1530 aa18.08■□□□□ 0.48
SNED1-205ENST00000405547 ANP32BQ92688 251 aaKnown RBP18.07■□□□□ 0.48
SNED1-205ENST00000405547 UPF2Q9HAU5 1272 aaKnown RBP18.06■□□□□ 0.48
SNED1-205ENST00000405547 MIER1Q8N108 512 aa18.05■□□□□ 0.48
SNED1-205ENST00000405547 FAM9BQ8IZU0 186 aa18.03■□□□□ 0.48
SNED1-205ENST00000405547 CCDC136Q96JN2 1154 aa18.03■□□□□ 0.48
SNED1-205ENST00000405547 EIF5BO60841 1220 aaKnown RBP18■□□□□ 0.47
SNED1-205ENST00000405547 FBLN2P98095 1184 aa17.99■□□□□ 0.47
SNED1-205ENST00000405547 TMC1Q8TDI8 760 aa17.98■□□□□ 0.47
SNED1-205ENST00000405547 HSP90AA1P07900 732 aaKnown RBP17.97■□□□□ 0.47
SNED1-205ENST00000405547 EEA1Q15075 1411 aa17.97■□□□□ 0.47
SNED1-205ENST00000405547 GLIPR1L2Q4G1C9 344 aa17.97■□□□□ 0.47
SNED1-205ENST00000405547 CLIP1P30622 1438 aa17.96■□□□□ 0.47
SNED1-205ENST00000405547 ZNF777Q9ULD5 760 aaPredicted RBP17.95■□□□□ 0.46
SNED1-205ENST00000405547 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.93■□□□□ 0.46
SNED1-205ENST00000405547 NBR1Q14596 966 aa17.92■□□□□ 0.46
SNED1-205ENST00000405547 BCL11AQ9H165 835 aa17.91■□□□□ 0.46
SNED1-205ENST00000405547 ARID3CA6NKF2 412 aa17.91■□□□□ 0.46
SNED1-205ENST00000405547 GOLGA3Q08378 1498 aa17.9■□□□□ 0.46
SNED1-205ENST00000405547 MRS2Q9HD23 443 aa17.9■□□□□ 0.46
SNED1-205ENST00000405547 CEP162Q5TB80 1403 aa17.88■□□□□ 0.45
SNED1-205ENST00000405547 SLC24A1O60721 1099 aa17.88■□□□□ 0.45
SNED1-205ENST00000405547 MTUS2Q5JR59 1369 aa17.83■□□□□ 0.45
SNED1-205ENST00000405547 EIF4G2P78344 907 aaKnown RBP eCLIP17.82■□□□□ 0.44
SNED1-205ENST00000405547 SALL2Q9Y467 1007 aaPredicted RBP17.81■□□□□ 0.44
SNED1-205ENST00000405547 WDR43Q15061 677 aaKnown RBP eCLIP17.79■□□□□ 0.44
SNED1-205ENST00000405547 ANP32EQ9BTT0 268 aa17.77■□□□□ 0.44
SNED1-205ENST00000405547 DDRGK1Q96HY6 314 aa17.77■□□□□ 0.43
SNED1-205ENST00000405547 RSF1Q96T23 1441 aaPredicted RBP17.76■□□□□ 0.43
SNED1-205ENST00000405547 RB1CC1Q8TDY2 1594 aa17.76■□□□□ 0.43
SNED1-205ENST00000405547 CHIC2Q9UKJ5 165 aa17.75■□□□□ 0.43
SNED1-205ENST00000405547 IRX6P78412 446 aaPredicted RBP17.74■□□□□ 0.43
SNED1-205ENST00000405547 TNIKQ9UKE5 1360 aa17.73■□□□□ 0.43
SNED1-205ENST00000405547 CEP164Q9UPV0 1460 aa17.71■□□□□ 0.43
SNED1-205ENST00000405547 BECN1Q14457 450 aa17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 6.5 ms