Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC12.84□□□□□ -0.35
CX3CR1P49238 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CX3CR1P49238 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
CX3CR1P49238 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC12.84□□□□□ -0.35
CX3CR1P49238 CACNA1C-211ENST00000399617 7482 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
CX3CR1P49238 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CX3CR1P49238 RIMBP2-201ENST00000261655 6321 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CX3CR1P49238 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
CX3CR1P49238 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CX3CR1P49238 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CX3CR1P49238 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC12.84□□□□□ -0.35
CX3CR1P49238 CICP16-201ENST00000502609 2813 ntBASIC12.84□□□□□ -0.35
CX3CR1P49238 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
CX3CR1P49238 RAP2B-201ENST00000323534 8351 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
CX3CR1P49238 ZNF800-203ENST00000393313 4358 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.35
CX3CR1P49238 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.35
CX3CR1P49238 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.35
CX3CR1P49238 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC12.83□□□□□ -0.35
CX3CR1P49238 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
CX3CR1P49238 EDEM3-202ENST00000367512 6678 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.35
CX3CR1P49238 TMEM2-202ENST00000377044 6523 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.35
CX3CR1P49238 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC12.83□□□□□ -0.35
CX3CR1P49238 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC12.83□□□□□ -0.35
CX3CR1P49238 WWTR1-203ENST00000465804 5030 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.35
CX3CR1P49238 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC12.83□□□□□ -0.35
CX3CR1P49238 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
CX3CR1P49238 WDR17-205ENST00000508596 4294 ntAPPRIS ALT1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CX3CR1P49238 FASN-201ENST00000306749 8565 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
CX3CR1P49238 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CX3CR1P49238 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC12.83□□□□□ -0.36
CX3CR1P49238 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CX3CR1P49238 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC12.83□□□□□ -0.36
CX3CR1P49238 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CX3CR1P49238 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
CX3CR1P49238 DENND3-211ENST00000519811 5482 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
CX3CR1P49238 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CX3CR1P49238 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CX3CR1P49238 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
CX3CR1P49238 AC089987.1-201ENST00000551654 2209 ntBASIC12.83□□□□□ -0.36
CX3CR1P49238 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC12.83□□□□□ -0.36
CX3CR1P49238 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CX3CR1P49238 MPV17-205ENST00000402310 906 ntTSL 5 BASIC12.83□□□□□ -0.36
CX3CR1P49238 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CX3CR1P49238 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC12.83□□□□□ -0.36
CX3CR1P49238 FAM8A4P-201ENST00000435433 1213 ntBASIC12.83□□□□□ -0.36
CX3CR1P49238 PTPA-220ENST00000436883 532 ntTSL 4 BASIC12.83□□□□□ -0.36
CX3CR1P49238 TTTY23B-201ENST00000442790 549 ntBASIC12.83□□□□□ -0.36
CX3CR1P49238 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC12.83□□□□□ -0.36
CX3CR1P49238 RN7SL692P-201ENST00000464677 288 ntBASIC12.83□□□□□ -0.36
CX3CR1P49238 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC12.83□□□□□ -0.36
CX3CR1P49238 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
CX3CR1P49238 SLC25A47P1-201ENST00000531577 414 ntBASIC12.83□□□□□ -0.36
CX3CR1P49238 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC12.83□□□□□ -0.36
CX3CR1P49238 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CX3CR1P49238 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC12.83□□□□□ -0.36
CX3CR1P49238 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC12.83□□□□□ -0.36
CX3CR1P49238 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC12.83□□□□□ -0.36
CX3CR1P49238 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC12.83□□□□□ -0.36
CX3CR1P49238 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CX3CR1P49238 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CX3CR1P49238 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC12.83□□□□□ -0.36
CX3CR1P49238 LGR5-201ENST00000266674 4611 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CX3CR1P49238 OR10AC1-201ENST00000439431 2898 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
CX3CR1P49238 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CX3CR1P49238 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
CX3CR1P49238 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC12.83□□□□□ -0.36
CX3CR1P49238 SMARCA5-201ENST00000283131 7923 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CX3CR1P49238 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CX3CR1P49238 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CX3CR1P49238 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CX3CR1P49238 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CX3CR1P49238 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CX3CR1P49238 CDH3-201ENST00000264012 4929 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CX3CR1P49238 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
CX3CR1P49238 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CX3CR1P49238 EPB41L1-202ENST00000338074 6266 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
CX3CR1P49238 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CX3CR1P49238 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC12.83□□□□□ -0.36
CX3CR1P49238 CICP8-201ENST00000455800 2813 ntBASIC12.83□□□□□ -0.36
CX3CR1P49238 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
CX3CR1P49238 AL354989.2-201ENST00000435838 1540 ntBASIC12.83□□□□□ -0.36
CX3CR1P49238 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CX3CR1P49238 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CX3CR1P49238 DSN1-203ENST00000373750 2233 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
CX3CR1P49238 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CX3CR1P49238 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC12.82□□□□□ -0.36
CX3CR1P49238 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
CX3CR1P49238 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
CX3CR1P49238 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
CX3CR1P49238 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC12.82□□□□□ -0.36
CX3CR1P49238 ACOX1-201ENST00000293217 7514 ntAPPRIS P5 TSL 1 (best) BASIC12.82□□□□□ -0.36
CX3CR1P49238 CYP20A1-201ENST00000356079 1949 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CX3CR1P49238 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
CX3CR1P49238 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC12.82□□□□□ -0.36
CX3CR1P49238 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CX3CR1P49238 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC12.82□□□□□ -0.36
CX3CR1P49238 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC12.82□□□□□ -0.36
CX3CR1P49238 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
CX3CR1P49238 ZBTB11-201ENST00000312938 6020 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CX3CR1P49238 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms