RNA–Protein interactions for RNA: ENST00000357943.9

CCNE1-202, Transcript of cyclin E1, humanhuman

TSL 1 (best) BASIC

Gene CCNE1, Length 1,641 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCNE1-202ENST00000357943 NISCHQ9Y2I1 1504 aa35.25■■■■□ 3.23
CCNE1-202ENST00000357943 CCDC180Q9P1Z9 1646 aa31.04■■■□□ 2.56
CCNE1-202ENST00000357943 ABCC9O60706 1549 aa30.05■■■□□ 2.4
CCNE1-202ENST00000357943 ZCCHC6Q5VYS8 1495 aaKnown RBP29.46■■■□□ 2.31
CCNE1-202ENST00000357943 DCAF8L2P0C7V8 631 aa29.35■■■□□ 2.29
CCNE1-202ENST00000357943 DCAF1Q9Y4B6 1507 aa29.14■■■□□ 2.26
CCNE1-202ENST00000357943 NACADO15069 1562 aa29.12■■■□□ 2.25
CCNE1-202ENST00000357943 MYO15BQ96JP2 1530 aa29.08■■■□□ 2.25
CCNE1-202ENST00000357943 RB1CC1Q8TDY2 1594 aa29.03■■■□□ 2.24
CCNE1-202ENST00000357943 SCRIBQ14160 1630 aa28.46■■■□□ 2.15
CCNE1-202ENST00000357943 UNC13AQ9UPW8 1703 aa28.38■■■□□ 2.13
CCNE1-202ENST00000357943 SHROOM4Q9ULL8 1493 aa28.23■■■□□ 2.11
CCNE1-202ENST00000357943 PABPN1Q86U42 306 aaKnown RBP eCLIP28.21■■■□□ 2.11
CCNE1-202ENST00000357943 BICRAQ9NZM4 1560 aa28.18■■■□□ 2.1
CCNE1-202ENST00000357943 CECR2Q9BXF3 1484 aa27.46■■□□□ 1.99
CCNE1-202ENST00000357943 EIF4G1Q04637 1599 aaKnown RBP27.4■■□□□ 1.98
CCNE1-202ENST00000357943 BAZ1AQ9NRL2 1556 aaPredicted RBP27.27■■□□□ 1.96
CCNE1-202ENST00000357943 SMARCA4P51532 1647 aa27.24■■□□□ 1.95
CCNE1-202ENST00000357943 DNAJC5BQ9UF47 199 aa27.22■■□□□ 1.95
CCNE1-202ENST00000357943 MROH2BQ7Z745 1585 aa27.2■■□□□ 1.95
CCNE1-202ENST00000357943 CC2D2AQ9P2K1 1620 aa27.17■■□□□ 1.94
CCNE1-202ENST00000357943 RSF1Q96T23 1441 aaPredicted RBP27.07■■□□□ 1.92
CCNE1-202ENST00000357943 ATAD2BQ9ULI0 1458 aa27■■□□□ 1.91
CCNE1-202ENST00000357943 SMARCA2P51531 1590 aa26.94■■□□□ 1.9
CCNE1-202ENST00000357943 PEG3Q9GZU2 1588 aa26.94■■□□□ 1.9
CCNE1-202ENST00000357943 WIZO95785 1651 aa26.92■■□□□ 1.9
CCNE1-202ENST00000357943 NCAPD3P42695 1498 aa26.9■■□□□ 1.9
CCNE1-202ENST00000357943 SUPT5HO00267 1087 aaKnown RBP26.79■■□□□ 1.88
CCNE1-202ENST00000357943 BAZ1BQ9UIG0 1483 aaKnown RBP26.79■■□□□ 1.88
CCNE1-202ENST00000357943 HMGXB3Q12766 1538 aa26.78■■□□□ 1.88
CCNE1-202ENST00000357943 TOP2AP11388 1531 aaKnown RBP26.63■■□□□ 1.85
CCNE1-202ENST00000357943 CCDC88BA6NC98 1476 aa26.36■■□□□ 1.81
CCNE1-202ENST00000357943 NESP48681 1621 aa26.16■■□□□ 1.78
CCNE1-202ENST00000357943 CADPSQ9ULU8 1353 aa26.16■■□□□ 1.78
CCNE1-202ENST00000357943 CFTRP13569 1480 aa26.09■■□□□ 1.77
CCNE1-202ENST00000357943 LAMC3Q9Y6N6 1575 aa26.08■■□□□ 1.77
CCNE1-202ENST00000357943 PDS5BQ9NTI5 1447 aa25.92■■□□□ 1.74
CCNE1-202ENST00000357943 FANCD2Q9BXW9 1451 aa25.85■■□□□ 1.73
CCNE1-202ENST00000357943 ERCC6Q03468 1493 aa25.84■■□□□ 1.73
CCNE1-202ENST00000357943 PRDM2Q13029 1718 aa25.83■■□□□ 1.73
CCNE1-202ENST00000357943 KIF21AQ7Z4S6 1674 aa25.8■■□□□ 1.72
CCNE1-202ENST00000357943 CEP164Q9UPV0 1460 aa25.76■■□□□ 1.71
CCNE1-202ENST00000357943 MRC2Q9UBG0 1479 aa25.62■■□□□ 1.69
CCNE1-202ENST00000357943 THOC2Q8NI27 1593 aaKnown RBP25.6■■□□□ 1.69
CCNE1-202ENST00000357943 URB2Q14146 1524 aaKnown RBP25.58■■□□□ 1.69
CCNE1-202ENST00000357943 ABCC8Q09428 1581 aa25.55■■□□□ 1.68
CCNE1-202ENST00000357943 WDR62O43379 1518 aa25.51■■□□□ 1.67
CCNE1-202ENST00000357943 WRNQ14191 1432 aaPredicted RBP eCLIP25.5■■□□□ 1.67
CCNE1-202ENST00000357943 CUX1P39880 1505 aa25.49■■□□□ 1.67
CCNE1-202ENST00000357943 TOPBP1Q92547 1522 aa25.49■■□□□ 1.67
CCNE1-202ENST00000357943 DNMBPQ6XZF7 1577 aa25.47■■□□□ 1.67
CCNE1-202ENST00000357943 SYNJ1O43426 1573 aa25.41■■□□□ 1.66
CCNE1-202ENST00000357943 CUX2O14529 1486 aa25.36■■□□□ 1.65
CCNE1-202ENST00000357943 TOP2BQ02880 1626 aa25.36■■□□□ 1.65
CCNE1-202ENST00000357943 BIVM-ERCC5R4GMW8 1640 aa25.33■■□□□ 1.64
CCNE1-202ENST00000357943 POLA1P09884 1462 aaPredicted RBP25.32■■□□□ 1.64
CCNE1-202ENST00000357943 FGD5Q6ZNL6 1462 aa25.32■■□□□ 1.64
CCNE1-202ENST00000357943 CHIC1Q5VXU3 224 aa25.26■■□□□ 1.63
CCNE1-202ENST00000357943 TRIM41Q8WV44 630 aa25.25■■□□□ 1.63
CCNE1-202ENST00000357943 RAD54L2Q9Y4B4 1467 aa25.23■■□□□ 1.63
CCNE1-202ENST00000357943 SOGA1O94964 1423 aa25.22■■□□□ 1.63
CCNE1-202ENST00000357943 IFT140Q96RY7 1462 aa25.19■■□□□ 1.62
CCNE1-202ENST00000357943 TARBP1Q13395 1621 aaKnown RBP25.15■■□□□ 1.62
CCNE1-202ENST00000357943 ZNF608Q9ULD9 1512 aaPredicted RBP25.09■■□□□ 1.61
CCNE1-202ENST00000357943 ABCA10Q8WWZ4 1543 aa25.08■■□□□ 1.61
CCNE1-202ENST00000357943 TDRD9Q8NDG6 1382 aaKnown RBP25.06■■□□□ 1.6
CCNE1-202ENST00000357943 WDR97A6NE52 1622 aa25.04■■□□□ 1.6
CCNE1-202ENST00000357943 AQRO60306 1485 aaKnown RBP eCLIP25.02■■□□□ 1.6
CCNE1-202ENST00000357943 EIF4G3O43432 1585 aaKnown RBP24.97■■□□□ 1.59
CCNE1-202ENST00000357943 GAPVD1Q14C86 1478 aa24.93■■□□□ 1.58
CCNE1-202ENST00000357943 ABCA5Q8WWZ7 1642 aa24.93■■□□□ 1.58
CCNE1-202ENST00000357943 KIF27Q86VH2 1401 aa24.91■■□□□ 1.58
CCNE1-202ENST00000357943 RUSC2Q8N2Y8 1516 aa24.89■■□□□ 1.58
CCNE1-202ENST00000357943 GRIN2BQ13224 1484 aa24.84■■□□□ 1.57
CCNE1-202ENST00000357943 PBRM1Q86U86 1689 aa24.8■■□□□ 1.56
CCNE1-202ENST00000357943 IGF1RP08069 1367 aa24.79■■□□□ 1.56
CCNE1-202ENST00000357943 SNAPC4Q5SXM2 1469 aa24.78■■□□□ 1.56
CCNE1-202ENST00000357943 ERICH3Q5RHP9 1530 aa24.77■■□□□ 1.56
CCNE1-202ENST00000357943 FAM9AQ8IZU1 332 aaPredicted RBP24.76■■□□□ 1.55
CCNE1-202ENST00000357943 MAGI1Q96QZ7 1491 aaPredicted RBP24.71■■□□□ 1.55
CCNE1-202ENST00000357943 EEA1Q15075 1411 aa24.71■■□□□ 1.55
CCNE1-202ENST00000357943 CSRNP3Q8WYN3 585 aa24.68■■□□□ 1.54
CCNE1-202ENST00000357943 ADAMTS12P58397 1594 aa24.65■■□□□ 1.54
CCNE1-202ENST00000357943 FHAD1B1AJZ9 1412 aa24.65■■□□□ 1.54
CCNE1-202ENST00000357943 FBLN2P98095 1184 aa24.64■■□□□ 1.54
CCNE1-202ENST00000357943 CARMIL1Q5VZK9 1371 aa24.63■■□□□ 1.53
CCNE1-202ENST00000357943 SYNJ2O15056 1496 aa24.63■■□□□ 1.53
CCNE1-202ENST00000357943 CHMP7Q8WUX9 453 aaPredicted RBP24.62■■□□□ 1.53
CCNE1-202ENST00000357943 CUL7Q14999 1698 aa24.61■■□□□ 1.53
CCNE1-202ENST00000357943 PRXQ9BXM0 1461 aa24.57■■□□□ 1.52
CCNE1-202ENST00000357943 GRIN2AQ12879 1464 aa24.54■■□□□ 1.52
CCNE1-202ENST00000357943 CHD1O14646 1710 aa24.54■■□□□ 1.52
CCNE1-202ENST00000357943 RAPGEF2Q9Y4G8 1499 aa24.52■■□□□ 1.52
CCNE1-202ENST00000357943 OSCARQ8IYS5 282 aa24.44■■□□□ 1.5
CCNE1-202ENST00000357943 EHMT2Q96KQ7 1210 aa24.44■■□□□ 1.5
CCNE1-202ENST00000357943 KIF21BO75037 1637 aa24.42■■□□□ 1.5
CCNE1-202ENST00000357943 NUP160Q12769 1436 aa24.41■■□□□ 1.5
CCNE1-202ENST00000357943 CEP170Q5SW79 1584 aa24.4■■□□□ 1.5
CCNE1-202ENST00000357943 GOLGA3Q08378 1498 aa24.35■■□□□ 1.49
CCNE1-202ENST00000357943 CLASP1Q7Z460 1538 aa24.3■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 122.8 ms