RNA–Protein interactions for RNA: ENST00000376259.6

TNFRSF1B-201, Transcript of TNF receptor superfamily member 1B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNFRSF1B, Length 3,683 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1B-201ENST00000376259 NISCHQ9Y2I1 1504 aa26.91■■□□□ 1.9
TNFRSF1B-201ENST00000376259 SHROOM4Q9ULL8 1493 aa25.14■■□□□ 1.61
TNFRSF1B-201ENST00000376259 DCAF8L2P0C7V8 631 aa25.07■■□□□ 1.6
TNFRSF1B-201ENST00000376259 SUPT5HO00267 1087 aaKnown RBP25.04■■□□□ 1.6
TNFRSF1B-201ENST00000376259 EHMT2Q96KQ7 1210 aa23.88■■□□□ 1.41
TNFRSF1B-201ENST00000376259 PCGF6Q9BYE7 350 aa23.86■■□□□ 1.41
TNFRSF1B-201ENST00000376259 FAM9AQ8IZU1 332 aaPredicted RBP23.45■■□□□ 1.34
TNFRSF1B-201ENST00000376259 CHIC1Q5VXU3 224 aa23.43■■□□□ 1.34
TNFRSF1B-201ENST00000376259 LOC105371045A0A1W2PR82 267 aa23.39■■□□□ 1.33
TNFRSF1B-201ENST00000376259 PPARGC1BQ86YN6 1023 aaKnown RBP23.38■■□□□ 1.33
TNFRSF1B-201ENST00000376259 HRCP23327 699 aa23.24■■□□□ 1.31
TNFRSF1B-201ENST00000376259 TTBK1Q5TCY1 1321 aaPredicted RBP23.05■■□□□ 1.28
TNFRSF1B-201ENST00000376259 TRIM41Q8WV44 630 aa22.89■■□□□ 1.25
TNFRSF1B-201ENST00000376259 MYO15BQ96JP2 1530 aa22.87■■□□□ 1.25
TNFRSF1B-201ENST00000376259 TRIM26Q12899 539 aaPredicted RBP22.66■■□□□ 1.22
TNFRSF1B-201ENST00000376259 ZCCHC6Q5VYS8 1495 aaKnown RBP22.57■■□□□ 1.2
TNFRSF1B-201ENST00000376259 CCER1Q8TC90 406 aaPredicted RBP22.41■■□□□ 1.18
TNFRSF1B-201ENST00000376259 RANGAP1P46060 587 aaPredicted RBP22.4■■□□□ 1.18
TNFRSF1B-201ENST00000376259 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.31■■□□□ 1.16
TNFRSF1B-201ENST00000376259 ZEB1P37275 1124 aaPredicted RBP22.25■■□□□ 1.15
TNFRSF1B-201ENST00000376259 UBTFP17480 764 aaKnown RBP22.13■■□□□ 1.13
TNFRSF1B-201ENST00000376259 YTHDC1Q96MU7 727 aaKnown RBP22.12■■□□□ 1.13
TNFRSF1B-201ENST00000376259 ABCC9O60706 1549 aa21.99■■□□□ 1.11
TNFRSF1B-201ENST00000376259 DCAF1Q9Y4B6 1507 aa21.98■■□□□ 1.11
TNFRSF1B-201ENST00000376259 SCRIBQ14160 1630 aa21.9■■□□□ 1.1
TNFRSF1B-201ENST00000376259 HNRNPUL2Q1KMD3 747 aaKnown RBP21.88■■□□□ 1.09
TNFRSF1B-201ENST00000376259 CCDC180Q9P1Z9 1646 aa21.88■■□□□ 1.09
TNFRSF1B-201ENST00000376259 APLP2Q06481 763 aa21.85■■□□□ 1.09
TNFRSF1B-201ENST00000376259 CENPBP07199 599 aaPredicted RBP21.79■■□□□ 1.08
TNFRSF1B-201ENST00000376259 DIEXFQ68CQ4 756 aaKnown RBP21.77■■□□□ 1.08
TNFRSF1B-201ENST00000376259 SCAF1Q9H7N4 1312 aaKnown RBP21.74■■□□□ 1.07
TNFRSF1B-201ENST00000376259 RSF1Q96T23 1441 aaPredicted RBP21.74■■□□□ 1.07
TNFRSF1B-201ENST00000376259 PABPN1Q86U42 306 aaKnown RBP eCLIP21.72■■□□□ 1.07
TNFRSF1B-201ENST00000376259 GTF3C3Q9Y5Q9 886 aa21.65■■□□□ 1.06
TNFRSF1B-201ENST00000376259 ITGAEP38570 1179 aa21.57■■□□□ 1.04
TNFRSF1B-201ENST00000376259 NEUROD1Q13562 356 aa21.57■■□□□ 1.04
TNFRSF1B-201ENST00000376259 PELP1Q8IZL8 1130 aaKnown RBP21.54■■□□□ 1.04
TNFRSF1B-201ENST00000376259 CECR2Q9BXF3 1484 aa21.49■■□□□ 1.03
TNFRSF1B-201ENST00000376259 ACIN1Q9UKV3 1341 aaKnown RBP21.48■■□□□ 1.03
TNFRSF1B-201ENST00000376259 ATP1B4Q9UN42 357 aaPredicted RBP21.47■■□□□ 1.03
TNFRSF1B-201ENST00000376259 RB1CC1Q8TDY2 1594 aa21.45■■□□□ 1.02
TNFRSF1B-201ENST00000376259 CSRNP3Q8WYN3 585 aa21.37■■□□□ 1.01
TNFRSF1B-201ENST00000376259 ZNF316A6NFI3 1004 aaPredicted RBP21.28■■□□□ 1
TNFRSF1B-201ENST00000376259 MROH2BQ7Z745 1585 aa21.19■□□□□ 0.98
TNFRSF1B-201ENST00000376259 MIER1Q8N108 512 aa21.16■□□□□ 0.98
TNFRSF1B-201ENST00000376259 SOGA1O94964 1423 aa21.1■□□□□ 0.97
TNFRSF1B-201ENST00000376259 CEP162Q5TB80 1403 aa21.09■□□□□ 0.97
TNFRSF1B-201ENST00000376259 ABCC8Q09428 1581 aa21.06■□□□□ 0.96
TNFRSF1B-201ENST00000376259 BCANQ96GW7 911 aa21.03■□□□□ 0.96
TNFRSF1B-201ENST00000376259 CCDC88BA6NC98 1476 aa21.01■□□□□ 0.95
TNFRSF1B-201ENST00000376259 WIZO95785 1651 aa21■□□□□ 0.95
TNFRSF1B-201ENST00000376259 P3H3Q8IVL6 736 aa20.94■□□□□ 0.94
TNFRSF1B-201ENST00000376259 FAM50AQ14320 339 aaKnown RBP20.91■□□□□ 0.94
TNFRSF1B-201ENST00000376259 CNGB1Q14028 1251 aaPredicted RBP20.9■□□□□ 0.94
TNFRSF1B-201ENST00000376259 RUSC2Q8N2Y8 1516 aa20.88■□□□□ 0.93
TNFRSF1B-201ENST00000376259 HIRIP3Q9BW71 556 aaPredicted RBP20.83■□□□□ 0.93
TNFRSF1B-201ENST00000376259 CLIP1P30622 1438 aa20.8■□□□□ 0.92
TNFRSF1B-201ENST00000376259 TNIKQ9UKE5 1360 aa20.79■□□□□ 0.92
TNFRSF1B-201ENST00000376259 NACADO15069 1562 aa20.73■□□□□ 0.91
TNFRSF1B-201ENST00000376259 WRNQ14191 1432 aaPredicted RBP eCLIP20.73■□□□□ 0.91
TNFRSF1B-201ENST00000376259 NEFLP07196 543 aa20.7■□□□□ 0.9
TNFRSF1B-201ENST00000376259 GOLGA3Q08378 1498 aa20.68■□□□□ 0.9
TNFRSF1B-201ENST00000376259 DDX10Q13206 875 aaKnown RBP20.68■□□□□ 0.9
TNFRSF1B-201ENST00000376259 BAZ1AQ9NRL2 1556 aaPredicted RBP20.68■□□□□ 0.9
TNFRSF1B-201ENST00000376259 KANK4Q5T7N3 995 aaPredicted RBP20.63■□□□□ 0.89
TNFRSF1B-201ENST00000376259 ARID3CA6NKF2 412 aa20.62■□□□□ 0.89
TNFRSF1B-201ENST00000376259 POLR3GLQ9BT43 218 aa20.6■□□□□ 0.89
TNFRSF1B-201ENST00000376259 TRIM52Q96A61 297 aa20.57■□□□□ 0.88
TNFRSF1B-201ENST00000376259 FKBP8Q14318 412 aa20.52■□□□□ 0.88
TNFRSF1B-201ENST00000376259 SIN3AQ96ST3 1273 aa20.51■□□□□ 0.87
TNFRSF1B-201ENST00000376259 KCNH8Q96L42 1107 aa20.49■□□□□ 0.87
TNFRSF1B-201ENST00000376259 EEA1Q15075 1411 aa20.48■□□□□ 0.87
TNFRSF1B-201ENST00000376259 CEP164Q9UPV0 1460 aa20.46■□□□□ 0.87
TNFRSF1B-201ENST00000376259 MYT1Q01538 1121 aa20.46■□□□□ 0.87
TNFRSF1B-201ENST00000376259 ERICH6Q7L0X2 663 aa20.43■□□□□ 0.86
TNFRSF1B-201ENST00000376259 RAPGEF2Q9Y4G8 1499 aa20.42■□□□□ 0.86
TNFRSF1B-201ENST00000376259 TOP2AP11388 1531 aaKnown RBP20.4■□□□□ 0.86
TNFRSF1B-201ENST00000376259 IRX6P78412 446 aaPredicted RBP20.4■□□□□ 0.86
TNFRSF1B-201ENST00000376259 SUPT16HQ9Y5B9 1047 aaKnown RBP20.39■□□□□ 0.86
TNFRSF1B-201ENST00000376259 ANP32CO43423 234 aa20.38■□□□□ 0.85
TNFRSF1B-201ENST00000376259 VPS8Q8N3P4 1428 aa20.38■□□□□ 0.85
TNFRSF1B-201ENST00000376259 SENP3-EIF4A1A0A087X0R7 540 aa20.36■□□□□ 0.85
TNFRSF1B-201ENST00000376259 BAZ1BQ9UIG0 1483 aaKnown RBP20.36■□□□□ 0.85
TNFRSF1B-201ENST00000376259 CHIC2Q9UKJ5 165 aa20.33■□□□□ 0.85
TNFRSF1B-201ENST00000376259 SMARCA2P51531 1590 aa20.32■□□□□ 0.84
TNFRSF1B-201ENST00000376259 SMARCA4P51532 1647 aa20.3■□□□□ 0.84
TNFRSF1B-201ENST00000376259 ZNF326Q5BKZ1 582 aaKnown RBP20.28■□□□□ 0.84
TNFRSF1B-201ENST00000376259 HNRNPUQ00839 825 aaKnown RBP eCLIP20.23■□□□□ 0.83
TNFRSF1B-201ENST00000376259 DHX57Q6P158 1386 aaKnown RBP20.21■□□□□ 0.83
TNFRSF1B-201ENST00000376259 CCNB3Q8WWL7 1395 aa20.19■□□□□ 0.82
TNFRSF1B-201ENST00000376259 TONSLQ96HA7 1378 aa20.16■□□□□ 0.82
TNFRSF1B-201ENST00000376259 RRP7BPQ9NSQ0 103 aa20.16■□□□□ 0.82
TNFRSF1B-201ENST00000376259 FAM9BQ8IZU0 186 aa20.15■□□□□ 0.82
TNFRSF1B-201ENST00000376259 KIF27Q86VH2 1401 aa20.13■□□□□ 0.81
TNFRSF1B-201ENST00000376259 RAB3GAP2Q9H2M9 1393 aa20.12■□□□□ 0.81
TNFRSF1B-201ENST00000376259 TSHZ2Q9NRE2 1034 aa20.08■□□□□ 0.8
TNFRSF1B-201ENST00000376259 SYNJ1O43426 1573 aa20.08■□□□□ 0.8
TNFRSF1B-201ENST00000376259 ATAD2BQ9ULI0 1458 aa20.07■□□□□ 0.8
TNFRSF1B-201ENST00000376259 CUX2O14529 1486 aa20.03■□□□□ 0.8
TNFRSF1B-201ENST00000376259 ZNF777Q9ULD5 760 aaPredicted RBP20.01■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 89.1 ms