Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 PKM-218ENST00000567087 550 ntTSL 424.49■■□□□ 1.516e-18■□□□□ 8.7
YBX3P16989 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC22.62■■□□□ 1.216e-18■□□□□ 8.7
YBX3P16989 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.376e-18■□□□□ 8.7
YBX3P16989 PKM-224ENST00000569857 1355 ntTSL 515.66■□□□□ 0.16e-18■□□□□ 8.7
YBX3P16989 PKM-207ENST00000562997 582 ntTSL 413.73□□□□□ -0.216e-18■□□□□ 8.7
YBX3P16989 PKM-211ENST00000564276 753 ntTSL 1 (best)13.51□□□□□ -0.256e-18■□□□□ 8.7
YBX3P16989 PKM-205ENST00000561609 1568 ntTSL 1 (best)13□□□□□ -0.336e-18■□□□□ 8.7
YBX3P16989 PKM-210ENST00000564178 554 ntTSL 411.54□□□□□ -0.566e-18■□□□□ 8.7
YBX3P16989 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC31.28■■■□□ 2.63e-8■□□□□ 8.7
YBX3P16989 PRMT5-225ENST00000557415 584 ntTSL 231.08■■■□□ 2.573e-8■□□□□ 8.7
YBX3P16989 PRMT5-205ENST00000421938 565 ntTSL 330.81■■■□□ 2.523e-8■□□□□ 8.7
YBX3P16989 PRMT5-210ENST00000553550 580 ntTSL 329.13■■■□□ 2.253e-8■□□□□ 8.7
YBX3P16989 PRMT5-215ENST00000554716 561 ntTSL 428.79■■■□□ 2.23e-8■□□□□ 8.7
YBX3P16989 PRMT5-222ENST00000556426 563 ntTSL 327.15■■□□□ 1.943e-8■□□□□ 8.7
YBX3P16989 PRMT5-224ENST00000557015 628 ntTSL 225.5■■□□□ 1.673e-8■□□□□ 8.7
YBX3P16989 PRMT5-212ENST00000553787 579 ntTSL 424.22■■□□□ 1.473e-8■□□□□ 8.7
YBX3P16989 PRMT5-216ENST00000554867 555 ntTSL 223.86■■□□□ 1.413e-8■□□□□ 8.7
YBX3P16989 TMEM106C-217ENST00000551705 666 ntTSL 319.69■□□□□ 0.743e-8■□□□□ 8.7
YBX3P16989 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.233e-8■□□□□ 8.7
YBX3P16989 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC15.48■□□□□ 0.073e-8■□□□□ 8.7
YBX3P16989 PRMT5-211ENST00000553641 800 ntTSL 315.4■□□□□ 0.063e-8■□□□□ 8.7
YBX3P16989 QPRT-204ENST00000564967 2199 nt14.05□□□□□ -0.163e-8■□□□□ 8.7
YBX3P16989 PRMT5-217ENST00000554910 577 ntTSL 412.46□□□□□ -0.413e-8■□□□□ 8.7
YBX3P16989 TMEM106C-218ENST00000552187 590 ntTSL 212.19□□□□□ -0.463e-8■□□□□ 8.7
YBX3P16989 SLC30A5-205ENST00000507354 2310 ntTSL 1 (best)10.8□□□□□ -0.683e-8■□□□□ 8.7
YBX3P16989 PRMT5-220ENST00000556032 643 ntTSL 510.45□□□□□ -0.743e-8■□□□□ 8.7
YBX3P16989 PRMT5-223ENST00000556616 571 ntTSL 48.31□□□□□ -1.083e-8■□□□□ 8.7
YBX3P16989 COPS3-205ENST00000463097 288 ntTSL 27.4□□□□□ -1.223e-8■□□□□ 8.7
YBX3P16989 TMEM106C-207ENST00000548153 558 ntTSL 46.82□□□□□ -1.323e-8■□□□□ 8.7
YBX3P16989 SHMT2-219ENST00000555563 895 ntTSL 517.92■□□□□ 0.463e-9■□□□□ 8.7
YBX3P16989 SHMT2-223ENST00000556689 768 ntTSL 317.77■□□□□ 0.443e-9■□□□□ 8.7
YBX3P16989 SHMT2-214ENST00000554604 879 ntTSL 516.37■□□□□ 0.213e-9■□□□□ 8.7
YBX3P16989 SHMT2-227ENST00000557269 576 ntTSL 516.01■□□□□ 0.153e-9■□□□□ 8.7
YBX3P16989 NBR1-206ENST00000590996 3446 ntAPPRIS P3 TSL 1 (best) BASIC10.84□□□□□ -0.671e-6■□□□□ 8.7
YBX3P16989 NBR1-201ENST00000341165 4656 ntAPPRIS P3 TSL 1 (best) BASIC8.13□□□□□ -1.111e-6■□□□□ 8.7
YBX3P16989 GTPBP2-209ENST00000480263 898 ntTSL 217.01■□□□□ 0.314e-8■□□□□ 8.7
YBX3P16989 GTPBP2-205ENST00000442748 946 ntTSL 316.71■□□□□ 0.274e-8■□□□□ 8.7
YBX3P16989 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.273e-8■□□□□ 8.7
YBX3P16989 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC25.83■■□□□ 1.733e-8■□□□□ 8.7
YBX3P16989 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.733e-8■□□□□ 8.7
YBX3P16989 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC19.62■□□□□ 0.733e-8■□□□□ 8.7
YBX3P16989 PSMB6-202ENST00000571309 583 ntTSL 318.78■□□□□ 0.63e-8■□□□□ 8.7
YBX3P16989 ARPC5L-203ENST00000465124 1877 ntTSL 216.39■□□□□ 0.223e-8■□□□□ 8.7
YBX3P16989 PPME1-204ENST00000538501 744 ntTSL 1 (best)8.67□□□□□ -1.023e-8■□□□□ 8.7
YBX3P16989 FN1-223ENST00000490833 699 ntTSL 36.47□□□□□ -1.372e-89■□□□□ 8.7
YBX3P16989 FN1-221ENST00000480737 384 ntTSL 25.78□□□□□ -1.482e-89■□□□□ 8.7
YBX3P16989 UQCRC1-202ENST00000412343 778 ntTSL 328.8■■■□□ 2.23e-7■□□□□ 8.7
YBX3P16989 UQCRC1-206ENST00000467690 931 ntTSL 227.14■■□□□ 1.943e-7■□□□□ 8.7
YBX3P16989 UQCRC1-208ENST00000472438 477 ntTSL 216.11■□□□□ 0.173e-7■□□□□ 8.7
YBX3P16989 IDH3B-210ENST00000491065 823 ntTSL 222.43■■□□□ 1.185e-8■□□□□ 8.7
YBX3P16989 SF3A3-202ENST00000460925 793 ntTSL 25.9□□□□□ -1.461e-19■□□□□ 8.7
YBX3P16989 POT1-209ENST00000466483 641 ntTSL 38.41□□□□□ -1.062e-8■□□□□ 8.7
YBX3P16989 MKRN1-216ENST00000498535 607 ntTSL 234.75■■■■□ 3.159e-7■□□□□ 8.7
YBX3P16989 ANAPC5-207ENST00000535472 1048 ntTSL 511.83□□□□□ -0.528e-17■□□□□ 8.7
YBX3P16989 ANAPC5-212ENST00000538223 292 ntTSL 58.42□□□□□ -1.068e-17■□□□□ 8.7
YBX3P16989 ANAPC5-215ENST00000539612 654 ntTSL 37.89□□□□□ -1.158e-17■□□□□ 8.7
YBX3P16989 ANAPC5-213ENST00000538334 6149 ntTSL 57.78□□□□□ -1.168e-17■□□□□ 8.7
YBX3P16989 ETFA-214ENST00000560345 717 ntTSL 411.33□□□□□ -0.64e-8■□□□□ 8.7
YBX3P16989 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC17.42■□□□□ 0.388e-17■□□□□ 8.7
YBX3P16989 YWHAE-212ENST00000575977 540 ntTSL 2 BASIC17.37■□□□□ 0.378e-17■□□□□ 8.7
YBX3P16989 YWHAE-201ENST00000264335 2211 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.178e-17■□□□□ 8.7
YBX3P16989 YWHAE-211ENST00000573196 739 ntTSL 215.01□□□□□ -0.018e-17■□□□□ 8.7
YBX3P16989 YWHAE-210ENST00000573026 780 ntTSL 3 BASIC12.66□□□□□ -0.388e-17■□□□□ 8.7
YBX3P16989 YWHAE-202ENST00000466227 1377 ntTSL 510.72□□□□□ -0.698e-17■□□□□ 8.7
YBX3P16989 YWHAE-206ENST00000496706 732 ntTSL 37.73□□□□□ -1.178e-17■□□□□ 8.7
YBX3P16989 FLNA-205ENST00000415241 704 ntTSL 519.36■□□□□ 0.696e-10■□□□□ 8.7
YBX3P16989 FLNA-213ENST00000466325 828 ntTSL 219.15■□□□□ 0.666e-10■□□□□ 8.7
YBX3P16989 CCNC-214ENST00000523639 815 ntTSL 222.71■■□□□ 1.231e-8■□□□□ 8.7
YBX3P16989 CCNC-202ENST00000369217 674 ntTSL 518.5■□□□□ 0.551e-8■□□□□ 8.7
YBX3P16989 CCNC-211ENST00000521017 579 ntTSL 415.44■□□□□ 0.061e-8■□□□□ 8.7
YBX3P16989 PDXK-218ENST00000498040 888 ntTSL 524.37■■□□□ 1.495e-10■□□□□ 8.7
YBX3P16989 PDXK-211ENST00000468392 1094 ntTSL 222.09■■□□□ 1.135e-10■□□□□ 8.7
YBX3P16989 PDXK-204ENST00000398078 1069 ntTSL 221.7■■□□□ 1.065e-10■□□□□ 8.7
YBX3P16989 PDXK-217ENST00000490666 577 ntTSL 520.19■□□□□ 0.825e-10■□□□□ 8.7
YBX3P16989 PDXK-203ENST00000343528 1101 ntTSL 1 (best)18.98■□□□□ 0.635e-10■□□□□ 8.7
YBX3P16989 PDXK-216ENST00000481512 583 ntTSL 512.33□□□□□ -0.445e-10■□□□□ 8.7
YBX3P16989 ETFA-206ENST00000559075 1735 ntTSL 225.44■■□□□ 1.663e-8■□□□□ 8.7
YBX3P16989 ETFA-211ENST00000560044 1054 ntTSL 524.67■■□□□ 1.543e-8■□□□□ 8.7
YBX3P16989 MSANTD3-202ENST00000374886 710 ntTSL 339.44■■■■□ 3.91e-6■□□□□ 8.7
YBX3P16989 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC29.67■■■□□ 2.341e-6■□□□□ 8.7
YBX3P16989 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC24.76■■□□□ 1.551e-6■□□□□ 8.7
YBX3P16989 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC24.68■■□□□ 1.546e-14■□□□□ 8.7
YBX3P16989 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC24.62■■□□□ 1.531e-6■□□□□ 8.7
YBX3P16989 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC24.53■■□□□ 1.521e-6■□□□□ 8.7
YBX3P16989 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC24.31■■□□□ 1.481e-6■□□□□ 8.7
YBX3P16989 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.461e-6■□□□□ 8.7
YBX3P16989 BUB3-202ENST00000368859 667 ntTSL 3 BASIC23.67■■□□□ 1.386e-14■□□□□ 8.7
YBX3P16989 CD33-207ENST00000601785 1522 ntTSL 523.18■■□□□ 1.31e-6■□□□□ 8.7
YBX3P16989 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC23.1■■□□□ 1.291e-6■□□□□ 8.7
YBX3P16989 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.91e-6■□□□□ 8.7
YBX3P16989 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC20.64■□□□□ 0.891e-6■□□□□ 8.7
YBX3P16989 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC20.49■□□□□ 0.871e-6■□□□□ 8.7
YBX3P16989 PAFAH1B2-203ENST00000526888 1099 ntTSL 220.39■□□□□ 0.851e-6■□□□□ 8.7
YBX3P16989 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.771e-6■□□□□ 8.7
YBX3P16989 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC19.3■□□□□ 0.681e-6■□□□□ 8.7
YBX3P16989 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.521e-6■□□□□ 8.7
YBX3P16989 CCAR2-212ENST00000523349 542 ntTSL 417.97■□□□□ 0.471e-9■□□□□ 8.7
YBX3P16989 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.461e-6■□□□□ 8.7
YBX3P16989 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.441e-6■□□□□ 8.7
YBX3P16989 DTD1-202ENST00000494921 2384 ntTSL 217.68■□□□□ 0.421e-6■□□□□ 8.7
Retrieved 100 of 29,075 protein–RNA pairs in 651.9 ms