RNA–Protein interactions for RNA: ENST00000341165.10

NBR1-201, Transcript of NBR1, autophagy cargo receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NBR1, Length 4,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NBR1-201ENST00000341165 NISCHQ9Y2I1 1504 aa16.44■□□□□ 0.22
NBR1-201ENST00000341165 CCDC180Q9P1Z9 1646 aa14.08□□□□□ -0.16
NBR1-201ENST00000341165 SHROOM4Q9ULL8 1493 aa13.88□□□□□ -0.19
NBR1-201ENST00000341165 ZCCHC6Q5VYS8 1495 aaKnown RBP13.86□□□□□ -0.19
NBR1-201ENST00000341165 DCAF8L2P0C7V8 631 aa13.79□□□□□ -0.2
NBR1-201ENST00000341165 SUPT5HO00267 1087 aaKnown RBP13.66□□□□□ -0.22
NBR1-201ENST00000341165 DCAF1Q9Y4B6 1507 aa13.56□□□□□ -0.24
NBR1-201ENST00000341165 MYO15BQ96JP2 1530 aa13.24□□□□□ -0.29
NBR1-201ENST00000341165 CHIC1Q5VXU3 224 aa13.18□□□□□ -0.3
NBR1-201ENST00000341165 NACADO15069 1562 aa13.1□□□□□ -0.31
NBR1-201ENST00000341165 SCRIBQ14160 1630 aa13.09□□□□□ -0.31
NBR1-201ENST00000341165 ABCC9O60706 1549 aa13.08□□□□□ -0.32
NBR1-201ENST00000341165 RSF1Q96T23 1441 aaPredicted RBP12.94□□□□□ -0.34
NBR1-201ENST00000341165 RB1CC1Q8TDY2 1594 aa12.92□□□□□ -0.34
NBR1-201ENST00000341165 PELP1Q8IZL8 1130 aaKnown RBP12.91□□□□□ -0.34
NBR1-201ENST00000341165 MYT1Q01538 1121 aa12.85□□□□□ -0.35
NBR1-201ENST00000341165 TRIM41Q8WV44 630 aa12.84□□□□□ -0.35
NBR1-201ENST00000341165 CECR2Q9BXF3 1484 aa12.71□□□□□ -0.37
NBR1-201ENST00000341165 BAZ1AQ9NRL2 1556 aaPredicted RBP12.71□□□□□ -0.38
NBR1-201ENST00000341165 LOC105371045A0A1W2PR82 267 aa12.7□□□□□ -0.38
NBR1-201ENST00000341165 PCGF6Q9BYE7 350 aa12.69□□□□□ -0.38
NBR1-201ENST00000341165 MROH2BQ7Z745 1585 aa12.69□□□□□ -0.38
NBR1-201ENST00000341165 HRCP23327 699 aa12.63□□□□□ -0.39
NBR1-201ENST00000341165 FAM9AQ8IZU1 332 aaPredicted RBP12.61□□□□□ -0.39
NBR1-201ENST00000341165 TRIM26Q12899 539 aaPredicted RBP12.59□□□□□ -0.39
NBR1-201ENST00000341165 WIZO95785 1651 aa12.58□□□□□ -0.4
NBR1-201ENST00000341165 TOP2AP11388 1531 aaKnown RBP12.53□□□□□ -0.4
NBR1-201ENST00000341165 SMARCA4P51532 1647 aa12.52□□□□□ -0.41
NBR1-201ENST00000341165 PABPN1Q86U42 306 aaKnown RBP eCLIP12.49□□□□□ -0.41
NBR1-201ENST00000341165 ZEB1P37275 1124 aaPredicted RBP12.45□□□□□ -0.42
NBR1-201ENST00000341165 EHMT2Q96KQ7 1210 aa12.44□□□□□ -0.42
NBR1-201ENST00000341165 CCDC88BA6NC98 1476 aa12.42□□□□□ -0.42
NBR1-201ENST00000341165 UNC13AQ9UPW8 1703 aa12.41□□□□□ -0.42
NBR1-201ENST00000341165 SMARCA2P51531 1590 aa12.37□□□□□ -0.43
NBR1-201ENST00000341165 EEA1Q15075 1411 aa12.36□□□□□ -0.43
NBR1-201ENST00000341165 BICRAQ9NZM4 1560 aa12.33□□□□□ -0.44
NBR1-201ENST00000341165 EIF4G1Q04637 1599 aaKnown RBP12.3□□□□□ -0.44
NBR1-201ENST00000341165 BAZ1BQ9UIG0 1483 aaKnown RBP12.3□□□□□ -0.44
NBR1-201ENST00000341165 PEG3Q9GZU2 1588 aa12.29□□□□□ -0.44
NBR1-201ENST00000341165 UBTFP17480 764 aaKnown RBP12.28□□□□□ -0.44
NBR1-201ENST00000341165 CSRNP3Q8WYN3 585 aa12.28□□□□□ -0.44
NBR1-201ENST00000341165 ABCC8Q09428 1581 aa12.27□□□□□ -0.45
NBR1-201ENST00000341165 ATAD2BQ9ULI0 1458 aa12.26□□□□□ -0.45
NBR1-201ENST00000341165 WRNQ14191 1432 aaPredicted RBP eCLIP12.25□□□□□ -0.45
NBR1-201ENST00000341165 TNIKQ9UKE5 1360 aa12.21□□□□□ -0.45
NBR1-201ENST00000341165 PPARGC1BQ86YN6 1023 aaKnown RBP12.19□□□□□ -0.46
NBR1-201ENST00000341165 GOLGA3Q08378 1498 aa12.18□□□□□ -0.46
NBR1-201ENST00000341165 SOGA1O94964 1423 aa12.17□□□□□ -0.46
NBR1-201ENST00000341165 CEP162Q5TB80 1403 aa12.16□□□□□ -0.46
NBR1-201ENST00000341165 APLP2Q06481 763 aa12.16□□□□□ -0.46
NBR1-201ENST00000341165 CEP164Q9UPV0 1460 aa12.14□□□□□ -0.47
NBR1-201ENST00000341165 CCER1Q8TC90 406 aaPredicted RBP12.11□□□□□ -0.47
NBR1-201ENST00000341165 NCAPD3P42695 1498 aa12.08□□□□□ -0.47
NBR1-201ENST00000341165 HMGXB3Q12766 1538 aa12.07□□□□□ -0.48
NBR1-201ENST00000341165 TTBK1Q5TCY1 1321 aaPredicted RBP12.04□□□□□ -0.48
NBR1-201ENST00000341165 SYNJ1O43426 1573 aa12.03□□□□□ -0.48
NBR1-201ENST00000341165 RUSC2Q8N2Y8 1516 aa12.03□□□□□ -0.48
NBR1-201ENST00000341165 KIF21BO75037 1637 aa12.02□□□□□ -0.48
NBR1-201ENST00000341165 CLIP1P30622 1438 aa12.02□□□□□ -0.49
NBR1-201ENST00000341165 TOP2BQ02880 1626 aa11.98□□□□□ -0.49
NBR1-201ENST00000341165 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.98□□□□□ -0.49
NBR1-201ENST00000341165 KIF27Q86VH2 1401 aa11.96□□□□□ -0.49
NBR1-201ENST00000341165 RANGAP1P46060 587 aaPredicted RBP11.94□□□□□ -0.5
NBR1-201ENST00000341165 VPS8Q8N3P4 1428 aa11.93□□□□□ -0.5
NBR1-201ENST00000341165 CFTRP13569 1480 aa11.93□□□□□ -0.5
NBR1-201ENST00000341165 BIVM-ERCC5R4GMW8 1640 aa11.92□□□□□ -0.5
NBR1-201ENST00000341165 RAPGEF2Q9Y4G8 1499 aa11.9□□□□□ -0.5
NBR1-201ENST00000341165 ERICH6Q7L0X2 663 aa11.9□□□□□ -0.5
NBR1-201ENST00000341165 ERICH3Q5RHP9 1530 aa11.9□□□□□ -0.51
NBR1-201ENST00000341165 CADPSQ9ULU8 1353 aa11.88□□□□□ -0.51
NBR1-201ENST00000341165 HNRNPUL2Q1KMD3 747 aaKnown RBP11.84□□□□□ -0.51
NBR1-201ENST00000341165 CUX1P39880 1505 aa11.84□□□□□ -0.51
NBR1-201ENST00000341165 PRXQ9BXM0 1461 aa11.84□□□□□ -0.51
NBR1-201ENST00000341165 CUX2O14529 1486 aa11.79□□□□□ -0.52
NBR1-201ENST00000341165 CENPBP07199 599 aaPredicted RBP11.77□□□□□ -0.52
NBR1-201ENST00000341165 PRDM2Q13029 1718 aa11.76□□□□□ -0.53
NBR1-201ENST00000341165 CC2D2AQ9P2K1 1620 aa11.75□□□□□ -0.53
NBR1-201ENST00000341165 DIEXFQ68CQ4 756 aaKnown RBP11.75□□□□□ -0.53
NBR1-201ENST00000341165 CARMIL1Q5VZK9 1371 aa11.74□□□□□ -0.53
NBR1-201ENST00000341165 FANCD2Q9BXW9 1451 aa11.73□□□□□ -0.53
NBR1-201ENST00000341165 ZNF316A6NFI3 1004 aaPredicted RBP11.72□□□□□ -0.53
NBR1-201ENST00000341165 FGD5Q6ZNL6 1462 aa11.72□□□□□ -0.53
NBR1-201ENST00000341165 IGF1RP08069 1367 aa11.71□□□□□ -0.53
NBR1-201ENST00000341165 CLSPNQ9HAW4 1339 aa11.71□□□□□ -0.54
NBR1-201ENST00000341165 ARAP1Q96P48 1450 aa11.7□□□□□ -0.54
NBR1-201ENST00000341165 FHAD1B1AJZ9 1412 aa11.68□□□□□ -0.54
NBR1-201ENST00000341165 ATP1B4Q9UN42 357 aaPredicted RBP11.66□□□□□ -0.54
NBR1-201ENST00000341165 DNMBPQ6XZF7 1577 aa11.65□□□□□ -0.54
NBR1-201ENST00000341165 ARHGAP35Q9NRY4 1499 aa11.64□□□□□ -0.55
NBR1-201ENST00000341165 PDS5BQ9NTI5 1447 aa11.64□□□□□ -0.55
NBR1-201ENST00000341165 CCNB3Q8WWL7 1395 aa11.63□□□□□ -0.55
NBR1-201ENST00000341165 KANK4Q5T7N3 995 aaPredicted RBP11.63□□□□□ -0.55
NBR1-201ENST00000341165 LAMC3Q9Y6N6 1575 aa11.6□□□□□ -0.55
NBR1-201ENST00000341165 ABCA10Q8WWZ4 1543 aa11.6□□□□□ -0.55
NBR1-201ENST00000341165 RRBP1Q9P2E9 1410 aaKnown RBP11.6□□□□□ -0.55
NBR1-201ENST00000341165 TOPBP1Q92547 1522 aa11.6□□□□□ -0.55
NBR1-201ENST00000341165 MAP3K1Q13233 1512 aa11.6□□□□□ -0.55
NBR1-201ENST00000341165 ITGAEP38570 1179 aa11.59□□□□□ -0.55
NBR1-201ENST00000341165 POLA1P09884 1462 aaPredicted RBP11.57□□□□□ -0.56
NBR1-201ENST00000341165 P3H3Q8IVL6 736 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms