RNA–Protein interactions for RNA: ENST00000463097.1

COPS3-205, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2

Gene COPS3, Length 288 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-205ENST00000463097 CHIC1Q5VXU3 224 aa20.75■□□□□ 0.91
COPS3-205ENST00000463097 AEBP2Q6ZN18 517 aaPredicted RBP20.4■□□□□ 0.86
COPS3-205ENST00000463097 PHF23Q9BUL5 403 aaPredicted RBP18.36■□□□□ 0.53
COPS3-205ENST00000463097 PLPPR3Q6T4P5 718 aa17.22■□□□□ 0.35
COPS3-205ENST00000463097 SENP3Q9H4L4 574 aaPredicted RBP17.16■□□□□ 0.34
COPS3-205ENST00000463097 ADRA2BP18089 450 aa16.12■□□□□ 0.17
COPS3-205ENST00000463097 PPP6R1Q9UPN7 881 aa15.92■□□□□ 0.14
COPS3-205ENST00000463097 KCNA4P22459 653 aa15.91■□□□□ 0.14
COPS3-205ENST00000463097 EHMT2Q96KQ7 1210 aa15.85■□□□□ 0.13
COPS3-205ENST00000463097 FOXD1Q16676 465 aa15.83■□□□□ 0.12
COPS3-205ENST00000463097 SLC4A1APQ9BWU0 796 aaKnown RBP15.31■□□□□ 0.04
COPS3-205ENST00000463097 PPP4R3CPQ6ZMV5 832 aa15.3■□□□□ 0.04
COPS3-205ENST00000463097 CSRNP3Q8WYN3 585 aa15.28■□□□□ 0.04
COPS3-205ENST00000463097 NCBP3Q53F19 620 aaKnown RBP15.14■□□□□ 0.01
COPS3-205ENST00000463097 PIAS4Q8N2W9 510 aaPredicted RBP15.13■□□□□ 0.01
COPS3-205ENST00000463097 NPM3O75607 178 aaKnown RBP14.92□□□□□ -0.02
COPS3-205ENST00000463097 CNKSR2Q8WXI2 1034 aa14.68□□□□□ -0.06
COPS3-205ENST00000463097 ZBTB22O15209 634 aa14.66□□□□□ -0.06
COPS3-205ENST00000463097 SCAF1Q9H7N4 1312 aaKnown RBP14.58□□□□□ -0.08
COPS3-205ENST00000463097 FOXD4L1Q9NU39 408 aa14.39□□□□□ -0.11
COPS3-205ENST00000463097 DNAJC5BQ9UF47 199 aa14.36□□□□□ -0.11
COPS3-205ENST00000463097 MSH5O43196 834 aa14.25□□□□□ -0.13
COPS3-205ENST00000463097 MAPK8IP2Q13387 824 aaPredicted RBP14.22□□□□□ -0.13
COPS3-205ENST00000463097 RNF216Q9NWF9 866 aaPredicted RBP14.17□□□□□ -0.14
COPS3-205ENST00000463097 SLC24A1O60721 1099 aa14.07□□□□□ -0.16
COPS3-205ENST00000463097 AMER1Q5JTC6 1135 aaPredicted RBP14.04□□□□□ -0.16
COPS3-205ENST00000463097 RTN4Q9NQC3 1192 aaKnown RBP14.04□□□□□ -0.16
COPS3-205ENST00000463097 HOXD11P31277 338 aaPredicted RBP13.89□□□□□ -0.19
COPS3-205ENST00000463097 SLC4A2P04920 1241 aa13.88□□□□□ -0.19
COPS3-205ENST00000463097 DMRT2Q9Y5R5 561 aa13.84□□□□□ -0.19
COPS3-205ENST00000463097 ATXN8OSP0DMR3 200 aa13.83□□□□□ -0.2
COPS3-205ENST00000463097 MYCNP04198 464 aaPredicted RBP13.76□□□□□ -0.21
COPS3-205ENST00000463097 FKBP8Q14318 412 aa13.75□□□□□ -0.21
COPS3-205ENST00000463097 ATF5Q9Y2D1 282 aaPredicted RBP13.35□□□□□ -0.27
COPS3-205ENST00000463097 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.24□□□□□ -0.29
COPS3-205ENST00000463097 HNRNPUL2Q1KMD3 747 aaKnown RBP13.24□□□□□ -0.29
COPS3-205ENST00000463097 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.24□□□□□ -0.29
COPS3-205ENST00000463097 SAMD1Q6SPF0 538 aaPredicted RBP13.23□□□□□ -0.29
COPS3-205ENST00000463097 DCAF8L1A6NGE4 600 aa13.19□□□□□ -0.3
COPS3-205ENST00000463097 U3KPZ7 1027 aaPredicted RBP13.12□□□□□ -0.31
COPS3-205ENST00000463097 ZNF219Q9P2Y4 722 aaPredicted RBP13.03□□□□□ -0.32
COPS3-205ENST00000463097 FBXO3Q9UK99 471 aa13.03□□□□□ -0.32
COPS3-205ENST00000463097 SPDYE4A6NLX3 237 aa12.93□□□□□ -0.34
COPS3-205ENST00000463097 PLCB2Q00722 1185 aa12.93□□□□□ -0.34
COPS3-205ENST00000463097 APLP2Q06481 763 aa12.9□□□□□ -0.34
COPS3-205ENST00000463097 VASPP50552 380 aaPredicted RBP12.83□□□□□ -0.36
COPS3-205ENST00000463097 PROM2Q8N271 834 aa12.83□□□□□ -0.36
COPS3-205ENST00000463097 MKRN4PQ13434 485 aaPredicted RBP12.8□□□□□ -0.36
COPS3-205ENST00000463097 HAP1P54257 671 aaPredicted RBP12.75□□□□□ -0.37
COPS3-205ENST00000463097 IFNLR1Q8IU57 520 aaPredicted RBP12.73□□□□□ -0.37
COPS3-205ENST00000463097 DCAF8L2P0C7V8 631 aa12.71□□□□□ -0.37
COPS3-205ENST00000463097 FBLN2P98095 1184 aa12.71□□□□□ -0.37
COPS3-205ENST00000463097 PKD2Q13563 968 aa12.63□□□□□ -0.39
COPS3-205ENST00000463097 BCANQ96GW7 911 aa12.62□□□□□ -0.39
COPS3-205ENST00000463097 VSIG10Q8N0Z9 540 aa12.58□□□□□ -0.4
COPS3-205ENST00000463097 TRHP20396 242 aaPredicted RBP12.56□□□□□ -0.4
COPS3-205ENST00000463097 POLA2Q14181 598 aa12.56□□□□□ -0.4
COPS3-205ENST00000463097 SPINK5Q9NQ38 1064 aaPredicted RBP12.51□□□□□ -0.41
COPS3-205ENST00000463097 PRKCSHP14314 528 aaPredicted RBP12.48□□□□□ -0.41
COPS3-205ENST00000463097 TAOK2Q9UL54 1235 aa12.46□□□□□ -0.41
COPS3-205ENST00000463097 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.45□□□□□ -0.42
COPS3-205ENST00000463097 BBXQ8WY36 941 aaPredicted RBP12.44□□□□□ -0.42
COPS3-205ENST00000463097 SPOCK2Q92563 424 aa12.43□□□□□ -0.42
COPS3-205ENST00000463097 KLHL34Q8N239 644 aa12.42□□□□□ -0.42
COPS3-205ENST00000463097 CAPN15O75808 1086 aa12.41□□□□□ -0.42
COPS3-205ENST00000463097 ECM2O94769 699 aaPredicted RBP12.41□□□□□ -0.42
COPS3-205ENST00000463097 ZBTB12Q9Y330 459 aaPredicted RBP12.4□□□□□ -0.42
COPS3-205ENST00000463097 KDM2AQ9Y2K7 1162 aa12.38□□□□□ -0.43
COPS3-205ENST00000463097 NPM1P06748 294 aaKnown RBP eCLIP12.36□□□□□ -0.43
COPS3-205ENST00000463097 PAXIP1Q6ZW49 1069 aaPredicted RBP12.36□□□□□ -0.43
COPS3-205ENST00000463097 CFAP44Q96MT7 982 aa12.32□□□□□ -0.44
COPS3-205ENST00000463097 STAG3Q9UJ98 1225 aa12.31□□□□□ -0.44
COPS3-205ENST00000463097 RNF39Q9H2S5 420 aa12.3□□□□□ -0.44
COPS3-205ENST00000463097 TPRNQ4KMQ1 711 aa12.27□□□□□ -0.45
COPS3-205ENST00000463097 ABCB7O75027 752 aa12.26□□□□□ -0.45
COPS3-205ENST00000463097 RGL2O15211 777 aa12.25□□□□□ -0.45
COPS3-205ENST00000463097 PLCD3Q8N3E9 789 aa12.25□□□□□ -0.45
COPS3-205ENST00000463097 ZNF692Q9BU19 519 aaPredicted RBP12.24□□□□□ -0.45
COPS3-205ENST00000463097 SPRYD3Q8NCJ5 442 aa12.23□□□□□ -0.45
COPS3-205ENST00000463097 C1QBPQ07021 282 aaKnown RBP12.2□□□□□ -0.46
COPS3-205ENST00000463097 MIER1Q8N108 512 aa12.18□□□□□ -0.46
COPS3-205ENST00000463097 TSHZ2Q9NRE2 1034 aa12.18□□□□□ -0.46
COPS3-205ENST00000463097 SPDYE2BA6NHP3 402 aa12.14□□□□□ -0.47
COPS3-205ENST00000463097 SPDYE6P0CI01 402 aa12.14□□□□□ -0.47
COPS3-205ENST00000463097 SPDYE2Q495Y8 402 aa12.14□□□□□ -0.47
COPS3-205ENST00000463097 SSUH2Q9Y2M2 353 aa12.14□□□□□ -0.47
COPS3-205ENST00000463097 CHGAP10645 457 aaKnown RBP12.11□□□□□ -0.47
COPS3-205ENST00000463097 PABPN1Q86U42 306 aaKnown RBP eCLIP12.1□□□□□ -0.47
COPS3-205ENST00000463097 CIZ1Q9ULV3 898 aaPredicted RBP12.09□□□□□ -0.47
COPS3-205ENST00000463097 OSCARQ8IYS5 282 aa12.08□□□□□ -0.48
COPS3-205ENST00000463097 ZBTB47Q9UFB7 747 aaPredicted RBP12.05□□□□□ -0.48
COPS3-205ENST00000463097 PLEKHG5O94827 1062 aa12.03□□□□□ -0.48
COPS3-205ENST00000463097 DSG3P32926 999 aa12.01□□□□□ -0.49
COPS3-205ENST00000463097 TRIM41Q8WV44 630 aa12.01□□□□□ -0.49
COPS3-205ENST00000463097 DNAJC5Q9H3Z4 198 aa12.01□□□□□ -0.49
COPS3-205ENST00000463097 NBR1Q14596 966 aa11.97□□□□□ -0.49
COPS3-205ENST00000463097 HS6ST3Q8IZP7 471 aa11.97□□□□□ -0.49
COPS3-205ENST00000463097 GSE1Q14687 1217 aa11.87□□□□□ -0.51
COPS3-205ENST00000463097 RNF25Q96BH1 459 aaPredicted RBP11.86□□□□□ -0.51
COPS3-205ENST00000463097 NKX1-1Q15270 411 aaPredicted RBP11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms