RNA–Protein interactions for RNA: ENST00000263559.10

VPS26A-201, Transcript of VPS26, retromer complex component A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS26A, Length 2,697 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS26A-201ENST00000263559 NISCHQ9Y2I1 1504 aa35.33■■■■□ 3.25
VPS26A-201ENST00000263559 CCDC180Q9P1Z9 1646 aa30.65■■■□□ 2.5
VPS26A-201ENST00000263559 ZCCHC6Q5VYS8 1495 aaKnown RBP29.7■■■□□ 2.35
VPS26A-201ENST00000263559 DCAF8L2P0C7V8 631 aa29.25■■■□□ 2.27
VPS26A-201ENST00000263559 DCAF1Q9Y4B6 1507 aa29.14■■■□□ 2.26
VPS26A-201ENST00000263559 SHROOM4Q9ULL8 1493 aa29.09■■■□□ 2.25
VPS26A-201ENST00000263559 ABCC9O60706 1549 aa28.92■■■□□ 2.22
VPS26A-201ENST00000263559 MYO15BQ96JP2 1530 aa28.7■■■□□ 2.18
VPS26A-201ENST00000263559 NACADO15069 1562 aa28.51■■■□□ 2.15
VPS26A-201ENST00000263559 SCRIBQ14160 1630 aa28.31■■■□□ 2.12
VPS26A-201ENST00000263559 RB1CC1Q8TDY2 1594 aa28.23■■■□□ 2.11
VPS26A-201ENST00000263559 SUPT5HO00267 1087 aaKnown RBP28.09■■■□□ 2.09
VPS26A-201ENST00000263559 UNC13AQ9UPW8 1703 aa27.75■■■□□ 2.03
VPS26A-201ENST00000263559 RSF1Q96T23 1441 aaPredicted RBP27.52■■■□□ 2
VPS26A-201ENST00000263559 CECR2Q9BXF3 1484 aa27.5■■□□□ 1.99
VPS26A-201ENST00000263559 BICRAQ9NZM4 1560 aa27.43■■□□□ 1.98
VPS26A-201ENST00000263559 PABPN1Q86U42 306 aaKnown RBP eCLIP27.36■■□□□ 1.97
VPS26A-201ENST00000263559 MROH2BQ7Z745 1585 aa27.34■■□□□ 1.97
VPS26A-201ENST00000263559 BAZ1AQ9NRL2 1556 aaPredicted RBP27.24■■□□□ 1.95
VPS26A-201ENST00000263559 WIZO95785 1651 aa27.15■■□□□ 1.94
VPS26A-201ENST00000263559 SMARCA4P51532 1647 aa27.11■■□□□ 1.93
VPS26A-201ENST00000263559 CHIC1Q5VXU3 224 aa26.96■■□□□ 1.91
VPS26A-201ENST00000263559 TOP2AP11388 1531 aaKnown RBP26.8■■□□□ 1.88
VPS26A-201ENST00000263559 PEG3Q9GZU2 1588 aa26.73■■□□□ 1.87
VPS26A-201ENST00000263559 ATAD2BQ9ULI0 1458 aa26.62■■□□□ 1.85
VPS26A-201ENST00000263559 SMARCA2P51531 1590 aa26.58■■□□□ 1.85
VPS26A-201ENST00000263559 CCDC88BA6NC98 1476 aa26.58■■□□□ 1.85
VPS26A-201ENST00000263559 EIF4G1Q04637 1599 aaKnown RBP26.57■■□□□ 1.84
VPS26A-201ENST00000263559 BAZ1BQ9UIG0 1483 aaKnown RBP26.48■■□□□ 1.83
VPS26A-201ENST00000263559 TRIM41Q8WV44 630 aa26.35■■□□□ 1.81
VPS26A-201ENST00000263559 NCAPD3P42695 1498 aa26.34■■□□□ 1.81
VPS26A-201ENST00000263559 HMGXB3Q12766 1538 aa26.29■■□□□ 1.8
VPS26A-201ENST00000263559 CC2D2AQ9P2K1 1620 aa26.14■■□□□ 1.78
VPS26A-201ENST00000263559 ABCC8Q09428 1581 aa26.12■■□□□ 1.77
VPS26A-201ENST00000263559 LOC105371045A0A1W2PR82 267 aa26.01■■□□□ 1.75
VPS26A-201ENST00000263559 FAM9AQ8IZU1 332 aaPredicted RBP25.94■■□□□ 1.74
VPS26A-201ENST00000263559 WRNQ14191 1432 aaPredicted RBP eCLIP25.88■■□□□ 1.73
VPS26A-201ENST00000263559 CFTRP13569 1480 aa25.82■■□□□ 1.72
VPS26A-201ENST00000263559 SYNJ1O43426 1573 aa25.78■■□□□ 1.72
VPS26A-201ENST00000263559 CADPSQ9ULU8 1353 aa25.7■■□□□ 1.7
VPS26A-201ENST00000263559 PRDM2Q13029 1718 aa25.69■■□□□ 1.7
VPS26A-201ENST00000263559 SOGA1O94964 1423 aa25.68■■□□□ 1.7
VPS26A-201ENST00000263559 TOP2BQ02880 1626 aa25.63■■□□□ 1.69
VPS26A-201ENST00000263559 EHMT2Q96KQ7 1210 aa25.62■■□□□ 1.69
VPS26A-201ENST00000263559 BIVM-ERCC5R4GMW8 1640 aa25.59■■□□□ 1.69
VPS26A-201ENST00000263559 RUSC2Q8N2Y8 1516 aa25.59■■□□□ 1.69
VPS26A-201ENST00000263559 EEA1Q15075 1411 aa25.55■■□□□ 1.68
VPS26A-201ENST00000263559 DNAJC5BQ9UF47 199 aa25.54■■□□□ 1.68
VPS26A-201ENST00000263559 CUX1P39880 1505 aa25.54■■□□□ 1.68
VPS26A-201ENST00000263559 CSRNP3Q8WYN3 585 aa25.49■■□□□ 1.67
VPS26A-201ENST00000263559 NESP48681 1621 aa25.47■■□□□ 1.67
VPS26A-201ENST00000263559 FANCD2Q9BXW9 1451 aa25.42■■□□□ 1.66
VPS26A-201ENST00000263559 LAMC3Q9Y6N6 1575 aa25.39■■□□□ 1.66
VPS26A-201ENST00000263559 GOLGA3Q08378 1498 aa25.26■■□□□ 1.63
VPS26A-201ENST00000263559 KIF21BO75037 1637 aa25.24■■□□□ 1.63
VPS26A-201ENST00000263559 CEP164Q9UPV0 1460 aa25.24■■□□□ 1.63
VPS26A-201ENST00000263559 TNIKQ9UKE5 1360 aa25.23■■□□□ 1.63
VPS26A-201ENST00000263559 FGD5Q6ZNL6 1462 aa25.22■■□□□ 1.63
VPS26A-201ENST00000263559 UBTFP17480 764 aaKnown RBP25.21■■□□□ 1.63
VPS26A-201ENST00000263559 DNMBPQ6XZF7 1577 aa25.2■■□□□ 1.63
VPS26A-201ENST00000263559 PDS5BQ9NTI5 1447 aa25.2■■□□□ 1.62
VPS26A-201ENST00000263559 KIF27Q86VH2 1401 aa25.19■■□□□ 1.62
VPS26A-201ENST00000263559 TOPBP1Q92547 1522 aa25.17■■□□□ 1.62
VPS26A-201ENST00000263559 KIF21AQ7Z4S6 1674 aa25.14■■□□□ 1.61
VPS26A-201ENST00000263559 CEP162Q5TB80 1403 aa25.13■■□□□ 1.61
VPS26A-201ENST00000263559 RAPGEF2Q9Y4G8 1499 aa25.12■■□□□ 1.61
VPS26A-201ENST00000263559 URB2Q14146 1524 aaKnown RBP25.11■■□□□ 1.61
VPS26A-201ENST00000263559 CUX2O14529 1486 aa25.1■■□□□ 1.61
VPS26A-201ENST00000263559 PRXQ9BXM0 1461 aa25.07■■□□□ 1.6
VPS26A-201ENST00000263559 POLA1P09884 1462 aaPredicted RBP25.07■■□□□ 1.6
VPS26A-201ENST00000263559 RAD54L2Q9Y4B4 1467 aa25.03■■□□□ 1.6
VPS26A-201ENST00000263559 ERICH3Q5RHP9 1530 aa25.03■■□□□ 1.6
VPS26A-201ENST00000263559 PCGF6Q9BYE7 350 aa25.01■■□□□ 1.59
VPS26A-201ENST00000263559 IGF1RP08069 1367 aa24.98■■□□□ 1.59
VPS26A-201ENST00000263559 ABCA10Q8WWZ4 1543 aa24.97■■□□□ 1.59
VPS26A-201ENST00000263559 TRIM26Q12899 539 aaPredicted RBP24.9■■□□□ 1.58
VPS26A-201ENST00000263559 WDR97A6NE52 1622 aa24.88■■□□□ 1.57
VPS26A-201ENST00000263559 CLIP1P30622 1438 aa24.88■■□□□ 1.57
VPS26A-201ENST00000263559 MRC2Q9UBG0 1479 aa24.87■■□□□ 1.57
VPS26A-201ENST00000263559 CARMIL1Q5VZK9 1371 aa24.85■■□□□ 1.57
VPS26A-201ENST00000263559 RANGAP1P46060 587 aaPredicted RBP24.81■■□□□ 1.56
VPS26A-201ENST00000263559 PPARGC1BQ86YN6 1023 aaKnown RBP24.8■■□□□ 1.56
VPS26A-201ENST00000263559 TARBP1Q13395 1621 aaKnown RBP24.78■■□□□ 1.56
VPS26A-201ENST00000263559 TDRD9Q8NDG6 1382 aaKnown RBP24.77■■□□□ 1.56
VPS26A-201ENST00000263559 ABCA5Q8WWZ7 1642 aa24.76■■□□□ 1.55
VPS26A-201ENST00000263559 ERCC6Q03468 1493 aa24.73■■□□□ 1.55
VPS26A-201ENST00000263559 WDR62O43379 1518 aa24.72■■□□□ 1.55
VPS26A-201ENST00000263559 GAPVD1Q14C86 1478 aa24.72■■□□□ 1.55
VPS26A-201ENST00000263559 CUL7Q14999 1698 aa24.71■■□□□ 1.55
VPS26A-201ENST00000263559 VPS8Q8N3P4 1428 aa24.68■■□□□ 1.54
VPS26A-201ENST00000263559 THOC2Q8NI27 1593 aaKnown RBP24.62■■□□□ 1.53
VPS26A-201ENST00000263559 ARAP1Q96P48 1450 aa24.62■■□□□ 1.53
VPS26A-201ENST00000263559 IFT140Q96RY7 1462 aa24.59■■□□□ 1.53
VPS26A-201ENST00000263559 AQRO60306 1485 aaKnown RBP eCLIP24.58■■□□□ 1.53
VPS26A-201ENST00000263559 ARHGAP35Q9NRY4 1499 aa24.58■■□□□ 1.53
VPS26A-201ENST00000263559 PBRM1Q86U86 1689 aa24.56■■□□□ 1.52
VPS26A-201ENST00000263559 TTBK1Q5TCY1 1321 aaPredicted RBP24.55■■□□□ 1.52
VPS26A-201ENST00000263559 ZNF608Q9ULD9 1512 aaPredicted RBP24.52■■□□□ 1.52
VPS26A-201ENST00000263559 CTTNBP2Q8WZ74 1663 aa24.5■■□□□ 1.51
VPS26A-201ENST00000263559 GRIN2BQ13224 1484 aa24.47■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms