RNA–Protein interactions for RNA: ENST00000490833.5

FN1-223, Transcript of fibronectin 1, human

TSL 3

Gene FN1, Length 699 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
FN1-223	ENST00000490833	AEBP2	Q6ZN18	517 aa	Predicted RBP	19.02	■□□□□ 0.64
FN1-223	ENST00000490833	CHIC1	Q5VXU3	224 aa		17.74	■□□□□ 0.43
FN1-223	ENST00000490833	SENP3	Q9H4L4	574 aa	Predicted RBP	16.31	■□□□□ 0.2
FN1-223	ENST00000490833	PHF23	Q9BUL5	403 aa	Predicted RBP	16.03	■□□□□ 0.16
FN1-223	ENST00000490833	POTED	Q86YR6	584 aa		15.53	■□□□□ 0.08
FN1-223	ENST00000490833	FOXD1	Q16676	465 aa		15.33	■□□□□ 0.04
FN1-223	ENST00000490833	MSH5	O43196	834 aa		14.6	□□□□□ -0.07
FN1-223	ENST00000490833	PIAS4	Q8N2W9	510 aa	Predicted RBP	14.11	□□□□□ -0.15
FN1-223	ENST00000490833	PLPPR3	Q6T4P5	718 aa		13.83	□□□□□ -0.2
FN1-223	ENST00000490833	PPP6R1	Q9UPN7	881 aa		13.78	□□□□□ -0.2
FN1-223	ENST00000490833	ADRA2B	P18089	450 aa		13.68	□□□□□ -0.22
FN1-223	ENST00000490833	NISCH	Q9Y2I1	1504 aa		13.28	□□□□□ -0.28
FN1-223	ENST00000490833	CACNB1	Q02641	598 aa	Predicted RBP	12.99	□□□□□ -0.33
FN1-223	ENST00000490833	DMRT2	Q9Y5R5	561 aa		12.83	□□□□□ -0.36
FN1-223	ENST00000490833	MAPK8IP2	Q13387	824 aa	Predicted RBP	12.8	□□□□□ -0.36
FN1-223	ENST00000490833	SCAF1	Q9H7N4	1312 aa	Known RBP	12.5	□□□□□ -0.41
FN1-223	ENST00000490833	RNF39	Q9H2S5	420 aa		12.4	□□□□□ -0.42
FN1-223	ENST00000490833	DCAF8L1	A6NGE4	600 aa		12.33	□□□□□ -0.44
FN1-223	ENST00000490833	C1QBP	Q07021	282 aa	Known RBP	12.18	□□□□□ -0.46
FN1-223	ENST00000490833	PPP4R3CP	Q6ZMV5	832 aa		12.11	□□□□□ -0.47
FN1-223	ENST00000490833	HOXD11	P31277	338 aa	Predicted RBP	12.08	□□□□□ -0.48
FN1-223	ENST00000490833	POTEH	Q6S545	545 aa		12.01	□□□□□ -0.49
FN1-223	ENST00000490833	CNKSR2	Q8WXI2	1034 aa		11.9	□□□□□ -0.5
FN1-223	ENST00000490833	DNAJC5B	Q9UF47	199 aa		11.81	□□□□□ -0.52
FN1-223	ENST00000490833	RNF216	Q9NWF9	866 aa	Predicted RBP	11.79	□□□□□ -0.52
FN1-223	ENST00000490833	NCBP3	Q53F19	620 aa	Known RBP	11.66	□□□□□ -0.54
FN1-223	ENST00000490833	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	11.5	□□□□□ -0.57
FN1-223	ENST00000490833	CCDC180	Q9P1Z9	1646 aa		11.46	□□□□□ -0.57
FN1-223	ENST00000490833	NPM3	O75607	178 aa	Known RBP	11.44	□□□□□ -0.58
FN1-223	ENST00000490833	DSG3	P32926	999 aa		11.37	□□□□□ -0.59
FN1-223	ENST00000490833	CAPN15	O75808	1086 aa		11.25	□□□□□ -0.61
FN1-223	ENST00000490833	SPINK5	Q9NQ38	1064 aa	Predicted RBP	11.24	□□□□□ -0.61
FN1-223	ENST00000490833	ZCCHC6	Q5VYS8	1495 aa	Known RBP	11.19	□□□□□ -0.62
FN1-223	ENST00000490833		U3KPZ7	1027 aa	Predicted RBP	11.18	□□□□□ -0.62
FN1-223	ENST00000490833	KCNA4	P22459	653 aa		11.15	□□□□□ -0.62
FN1-223	ENST00000490833	DCAF1	Q9Y4B6	1507 aa		11.12	□□□□□ -0.63
FN1-223	ENST00000490833	MYO15B	Q96JP2	1530 aa		10.93	□□□□□ -0.66
FN1-223	ENST00000490833	ABCB7	O75027	752 aa		10.92	□□□□□ -0.66
FN1-223	ENST00000490833	CHRDL2	Q6WN34	429 aa		10.91	□□□□□ -0.66
FN1-223	ENST00000490833	SP7	Q8TDD2	431 aa	Predicted RBP	10.91	□□□□□ -0.66
FN1-223	ENST00000490833	SLC4A2	P04920	1241 aa		10.9	□□□□□ -0.66
FN1-223	ENST00000490833	TRH	P20396	242 aa	Predicted RBP	10.9	□□□□□ -0.66
FN1-223	ENST00000490833	DCAF8L2	P0C7V8	631 aa		10.86	□□□□□ -0.67
FN1-223	ENST00000490833	APLP2	Q06481	763 aa		10.86	□□□□□ -0.67
FN1-223	ENST00000490833	RBM42	Q9BTD8	480 aa	Known RBP	10.84	□□□□□ -0.67
FN1-223	ENST00000490833	SHROOM4	Q9ULL8	1493 aa		10.84	□□□□□ -0.67
FN1-223	ENST00000490833	ZNF219	Q9P2Y4	722 aa	Predicted RBP	10.82	□□□□□ -0.68
FN1-223	ENST00000490833	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	10.81	□□□□□ -0.68
FN1-223	ENST00000490833	HNRNPUL2	Q1KMD3	747 aa	Known RBP	10.81	□□□□□ -0.68
FN1-223	ENST00000490833	SAMD1	Q6SPF0	538 aa	Predicted RBP	10.73	□□□□□ -0.69
FN1-223	ENST00000490833	SUPT5H	O00267	1087 aa	Known RBP	10.72	□□□□□ -0.69
FN1-223	ENST00000490833	NACAD	O15069	1562 aa		10.69	□□□□□ -0.7
FN1-223	ENST00000490833	MYCN	P04198	464 aa	Predicted RBP	10.61	□□□□□ -0.71
FN1-223	ENST00000490833	SLC4A1AP	Q9BWU0	796 aa	Known RBP	10.55	□□□□□ -0.72
FN1-223	ENST00000490833	HAX1	O00165	279 aa		10.52	□□□□□ -0.73
FN1-223	ENST00000490833	PIP4P2	Q8N4L2	257 aa		10.5	□□□□□ -0.73
FN1-223	ENST00000490833	POLA2	Q14181	598 aa		10.49	□□□□□ -0.73
FN1-223	ENST00000490833	ABCC9	O60706	1549 aa		10.48	□□□□□ -0.73
FN1-223	ENST00000490833	RB1CC1	Q8TDY2	1594 aa		10.48	□□□□□ -0.73
FN1-223	ENST00000490833	AKT1S1	Q96B36	256 aa		10.45	□□□□□ -0.74
FN1-223	ENST00000490833	FOXD4L1	Q9NU39	408 aa		10.45	□□□□□ -0.74
FN1-223	ENST00000490833	SCRIB	Q14160	1630 aa		10.4	□□□□□ -0.74
FN1-223	ENST00000490833	RSF1	Q96T23	1441 aa	Predicted RBP	10.4	□□□□□ -0.75
FN1-223	ENST00000490833	REM2	Q8IYK8	340 aa	Predicted RBP	10.37	□□□□□ -0.75
FN1-223	ENST00000490833	EVX2	Q03828	476 aa		10.36	□□□□□ -0.75
FN1-223	ENST00000490833	FXR2	P51116	673 aa	Known RBP eCLIP	10.33	□□□□□ -0.76
FN1-223	ENST00000490833	ATF5	Q9Y2D1	282 aa	Predicted RBP	10.33	□□□□□ -0.76
FN1-223	ENST00000490833	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	10.29	□□□□□ -0.76
FN1-223	ENST00000490833	ZBTB12	Q9Y330	459 aa	Predicted RBP	10.28	□□□□□ -0.76
FN1-223	ENST00000490833	PITPNM1	O00562	1244 aa		10.25	□□□□□ -0.77
FN1-223	ENST00000490833	LHX8	Q68G74	356 aa		10.24	□□□□□ -0.77
FN1-223	ENST00000490833	ZBTB22	O15209	634 aa		10.21	□□□□□ -0.77
FN1-223	ENST00000490833	TRIM41	Q8WV44	630 aa		10.21	□□□□□ -0.77
FN1-223	ENST00000490833	PLSCR2	Q9NRY7	297 aa		10.19	□□□□□ -0.78
FN1-223	ENST00000490833	OSCAR	Q8IYS5	282 aa		10.18	□□□□□ -0.78
FN1-223	ENST00000490833	MROH2B	Q7Z745	1585 aa		10.15	□□□□□ -0.78
FN1-223	ENST00000490833	CECR2	Q9BXF3	1484 aa		10.15	□□□□□ -0.78
FN1-223	ENST00000490833	TOP2A	P11388	1531 aa	Known RBP	10.09	□□□□□ -0.79
FN1-223	ENST00000490833	ATXN8OS	P0DMR3	200 aa		10.09	□□□□□ -0.79
FN1-223	ENST00000490833	SMARCA4	P51532	1647 aa		10.08	□□□□□ -0.8
FN1-223	ENST00000490833	GABBR2	O75899	941 aa		10.07	□□□□□ -0.8
FN1-223	ENST00000490833	PEG3	Q9GZU2	1588 aa		10.05	□□□□□ -0.8
FN1-223	ENST00000490833	WIZ	O95785	1651 aa		10.04	□□□□□ -0.8
FN1-223	ENST00000490833	FBLN2	P98095	1184 aa		10.03	□□□□□ -0.8
FN1-223	ENST00000490833	TRIM26	Q12899	539 aa	Predicted RBP	10.03	□□□□□ -0.8
FN1-223	ENST00000490833	EEA1	Q15075	1411 aa		10.03	□□□□□ -0.8
FN1-223	ENST00000490833	C19orf67	A6NJJ6	358 aa		10.02	□□□□□ -0.81
FN1-223	ENST00000490833	UNC13A	Q9UPW8	1703 aa		10	□□□□□ -0.81
FN1-223	ENST00000490833	SMARCA2	P51531	1590 aa		10	□□□□□ -0.81
FN1-223	ENST00000490833	PRKAR2A	P13861	404 aa	Known RBP	9.98	□□□□□ -0.81
FN1-223	ENST00000490833	ZEB1	P37275	1124 aa	Predicted RBP	9.98	□□□□□ -0.81
FN1-223	ENST00000490833	LOC105371045	A0A1W2PR82	267 aa		9.97	□□□□□ -0.81
FN1-223	ENST00000490833	CCDC88B	A6NC98	1476 aa		9.97	□□□□□ -0.81
FN1-223	ENST00000490833	BICRA	Q9NZM4	1560 aa		9.97	□□□□□ -0.81
FN1-223	ENST00000490833	HRC	P23327	699 aa		9.96	□□□□□ -0.82
FN1-223	ENST00000490833	SPDYE2B	A6NHP3	402 aa		9.93	□□□□□ -0.82
FN1-223	ENST00000490833	SPDYE6	P0CI01	402 aa		9.93	□□□□□ -0.82
FN1-223	ENST00000490833	SPDYE2	Q495Y8	402 aa		9.93	□□□□□ -0.82
FN1-223	ENST00000490833	PCGF6	Q9BYE7	350 aa		9.93	□□□□□ -0.82
FN1-223	ENST00000490833	PABPN1	Q86U42	306 aa	Known RBP eCLIP	9.9	□□□□□ -0.82

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