RNA–Protein interactions for RNA: ENST00000460925.1

SF3A3-202, Transcript of splicing factor 3a subunit 3, humanhuman

TSL 2

Gene SF3A3, Length 793 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-202ENST00000460925 CHIC1Q5VXU3 224 aa17.72■□□□□ 0.43
SF3A3-202ENST00000460925 AEBP2Q6ZN18 517 aaPredicted RBP17.62■□□□□ 0.41
SF3A3-202ENST00000460925 PHF23Q9BUL5 403 aaPredicted RBP15.62■□□□□ 0.09
SF3A3-202ENST00000460925 SENP3Q9H4L4 574 aaPredicted RBP14.9□□□□□ -0.02
SF3A3-202ENST00000460925 PLPPR3Q6T4P5 718 aa14.6□□□□□ -0.07
SF3A3-202ENST00000460925 FOXD1Q16676 465 aa13.74□□□□□ -0.21
SF3A3-202ENST00000460925 ADRA2BP18089 450 aa13.61□□□□□ -0.23
SF3A3-202ENST00000460925 PPP6R1Q9UPN7 881 aa13.6□□□□□ -0.23
SF3A3-202ENST00000460925 KCNA4P22459 653 aa13.15□□□□□ -0.3
SF3A3-202ENST00000460925 PIAS4Q8N2W9 510 aaPredicted RBP13.05□□□□□ -0.32
SF3A3-202ENST00000460925 PPP4R3CPQ6ZMV5 832 aa12.91□□□□□ -0.34
SF3A3-202ENST00000460925 EHMT2Q96KQ7 1210 aa12.74□□□□□ -0.37
SF3A3-202ENST00000460925 NCBP3Q53F19 620 aaKnown RBP12.73□□□□□ -0.37
SF3A3-202ENST00000460925 SLC4A1APQ9BWU0 796 aaKnown RBP12.61□□□□□ -0.39
SF3A3-202ENST00000460925 NPM3O75607 178 aaKnown RBP12.53□□□□□ -0.4
SF3A3-202ENST00000460925 MSH5O43196 834 aa12.51□□□□□ -0.41
SF3A3-202ENST00000460925 SCAF1Q9H7N4 1312 aaKnown RBP12.48□□□□□ -0.41
SF3A3-202ENST00000460925 CNKSR2Q8WXI2 1034 aa12.46□□□□□ -0.41
SF3A3-202ENST00000460925 CSRNP3Q8WYN3 585 aa12.46□□□□□ -0.41
SF3A3-202ENST00000460925 DNAJC5BQ9UF47 199 aa12.25□□□□□ -0.45
SF3A3-202ENST00000460925 MAPK8IP2Q13387 824 aaPredicted RBP12.17□□□□□ -0.46
SF3A3-202ENST00000460925 ZBTB22O15209 634 aa12.12□□□□□ -0.47
SF3A3-202ENST00000460925 RNF216Q9NWF9 866 aaPredicted RBP12.11□□□□□ -0.47
SF3A3-202ENST00000460925 FOXD4L1Q9NU39 408 aa11.99□□□□□ -0.49
SF3A3-202ENST00000460925 DMRT2Q9Y5R5 561 aa11.98□□□□□ -0.49
SF3A3-202ENST00000460925 HOXD11P31277 338 aaPredicted RBP11.95□□□□□ -0.5
SF3A3-202ENST00000460925 SLC4A2P04920 1241 aa11.72□□□□□ -0.53
SF3A3-202ENST00000460925 ATXN8OSP0DMR3 200 aa11.59□□□□□ -0.55
SF3A3-202ENST00000460925 MYCNP04198 464 aaPredicted RBP11.58□□□□□ -0.56
SF3A3-202ENST00000460925 NISCHQ9Y2I1 1504 aa11.35□□□□□ -0.59
SF3A3-202ENST00000460925 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.3□□□□□ -0.65e-7■□□□□ 10.1
SF3A3-202ENST00000460925 DCAF8L1A6NGE4 600 aa11.29□□□□□ -0.6
SF3A3-202ENST00000460925 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.27□□□□□ -0.61
SF3A3-202ENST00000460925 HNRNPUL2Q1KMD3 747 aaKnown RBP11.27□□□□□ -0.61
SF3A3-202ENST00000460925 SAMD1Q6SPF0 538 aaPredicted RBP11.25□□□□□ -0.61
SF3A3-202ENST00000460925 U3KPZ7 1027 aaPredicted RBP11.21□□□□□ -0.61
SF3A3-202ENST00000460925 ATF5Q9Y2D1 282 aaPredicted RBP11.19□□□□□ -0.62
SF3A3-202ENST00000460925 FKBP8Q14318 412 aa11.18□□□□□ -0.62
SF3A3-202ENST00000460925 AMER1Q5JTC6 1135 aaPredicted RBP11.11□□□□□ -0.63
SF3A3-202ENST00000460925 RTN4Q9NQC3 1192 aaKnown RBP11.05□□□□□ -0.64
SF3A3-202ENST00000460925 APLP2Q06481 763 aa11.03□□□□□ -0.64
SF3A3-202ENST00000460925 ZNF219Q9P2Y4 722 aaPredicted RBP10.98□□□□□ -0.65
SF3A3-202ENST00000460925 POTEDQ86YR6 584 aa10.93□□□□□ -0.66
SF3A3-202ENST00000460925 SLC24A1O60721 1099 aa10.79□□□□□ -0.68
SF3A3-202ENST00000460925 RNF39Q9H2S5 420 aa10.77□□□□□ -0.69
SF3A3-202ENST00000460925 MKRN4PQ13434 485 aaPredicted RBP10.76□□□□□ -0.69
SF3A3-202ENST00000460925 SPDYE4A6NLX3 237 aa10.74□□□□□ -0.69
SF3A3-202ENST00000460925 PROM2Q8N271 834 aa10.73□□□□□ -0.69
SF3A3-202ENST00000460925 SPINK5Q9NQ38 1064 aaPredicted RBP10.71□□□□□ -0.69
SF3A3-202ENST00000460925 FBXO3Q9UK99 471 aa10.71□□□□□ -0.69
SF3A3-202ENST00000460925 FBLN2P98095 1184 aa10.7□□□□□ -0.7
SF3A3-202ENST00000460925 TRHP20396 242 aaPredicted RBP10.68□□□□□ -0.7
SF3A3-202ENST00000460925 C1QBPQ07021 282 aaKnown RBP10.68□□□□□ -0.7
SF3A3-202ENST00000460925 POLA2Q14181 598 aa10.66□□□□□ -0.7
SF3A3-202ENST00000460925 CAPN15O75808 1086 aa10.62□□□□□ -0.71
SF3A3-202ENST00000460925 ZBTB12Q9Y330 459 aaPredicted RBP10.59□□□□□ -0.71
SF3A3-202ENST00000460925 VASPP50552 380 aaPredicted RBP10.53□□□□□ -0.72
SF3A3-202ENST00000460925 ABCB7O75027 752 aa10.45□□□□□ -0.74
SF3A3-202ENST00000460925 IFNLR1Q8IU57 520 aaPredicted RBP10.43□□□□□ -0.74
SF3A3-202ENST00000460925 DSG3P32926 999 aa10.4□□□□□ -0.74
SF3A3-202ENST00000460925 SPDYE2BA6NHP3 402 aa10.33□□□□□ -0.76
SF3A3-202ENST00000460925 SPDYE6P0CI01 402 aa10.33□□□□□ -0.76
SF3A3-202ENST00000460925 SPDYE2Q495Y8 402 aa10.33□□□□□ -0.76
SF3A3-202ENST00000460925 SSUH2Q9Y2M2 353 aa10.33□□□□□ -0.76
SF3A3-202ENST00000460925 ZNF692Q9BU19 519 aaPredicted RBP10.31□□□□□ -0.76
SF3A3-202ENST00000460925 STAG3Q9UJ98 1225 aa10.3□□□□□ -0.76
SF3A3-202ENST00000460925 PKD2Q13563 968 aa10.28□□□□□ -0.76
SF3A3-202ENST00000460925 OSCARQ8IYS5 282 aa10.27□□□□□ -0.77
SF3A3-202ENST00000460925 PLCB2Q00722 1185 aa10.25□□□□□ -0.77
SF3A3-202ENST00000460925 SPOCK2Q92563 424 aa10.23□□□□□ -0.77
SF3A3-202ENST00000460925 PABPN1Q86U42 306 aaKnown RBP eCLIP10.19□□□□□ -0.78
SF3A3-202ENST00000460925 KLHL34Q8N239 644 aa10.17□□□□□ -0.78
SF3A3-202ENST00000460925 PLCD3Q8N3E9 789 aa10.13□□□□□ -0.79
SF3A3-202ENST00000460925 DCAF8L2P0C7V8 631 aa10.1□□□□□ -0.79
SF3A3-202ENST00000460925 MIER1Q8N108 512 aa10.1□□□□□ -0.79
SF3A3-202ENST00000460925 ECM2O94769 699 aaPredicted RBP10.08□□□□□ -0.8
SF3A3-202ENST00000460925 CACNB1Q02641 598 aaPredicted RBP10.06□□□□□ -0.8
SF3A3-202ENST00000460925 ZBTB47Q9UFB7 747 aaPredicted RBP10.06□□□□□ -0.8
SF3A3-202ENST00000460925 PLEKHG5O94827 1062 aa10.03□□□□□ -0.8
SF3A3-202ENST00000460925 BBXQ8WY36 941 aaPredicted RBP10.03□□□□□ -0.8
SF3A3-202ENST00000460925 CCDC180Q9P1Z9 1646 aa10.03□□□□□ -0.8
SF3A3-202ENST00000460925 HAP1P54257 671 aaPredicted RBP10.01□□□□□ -0.81
SF3A3-202ENST00000460925 RGL2O15211 777 aa9.98□□□□□ -0.81
SF3A3-202ENST00000460925 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.98□□□□□ -0.81
SF3A3-202ENST00000460925 NPM1P06748 294 aaKnown RBP eCLIP9.97□□□□□ -0.81
SF3A3-202ENST00000460925 VSIG10Q8N0Z9 540 aa9.97□□□□□ -0.81
SF3A3-202ENST00000460925 TRIM41Q8WV44 630 aa9.96□□□□□ -0.82
SF3A3-202ENST00000460925 RBM42Q9BTD8 480 aaKnown RBP9.91□□□□□ -0.82
SF3A3-202ENST00000460925 CIZ1Q9ULV3 898 aaPredicted RBP9.91□□□□□ -0.82
SF3A3-202ENST00000460925 SPDYE1Q8NFV5 336 aaPredicted RBP9.9□□□□□ -0.82
SF3A3-202ENST00000460925 AKT1S1Q96B36 256 aa9.9□□□□□ -0.82
SF3A3-202ENST00000460925 GSE1Q14687 1217 aa9.87□□□□□ -0.83
SF3A3-202ENST00000460925 PAXIP1Q6ZW49 1069 aaPredicted RBP9.87□□□□□ -0.83
SF3A3-202ENST00000460925 NUBP1P53384 320 aa9.85□□□□□ -0.83
SF3A3-202ENST00000460925 SPRYD3Q8NCJ5 442 aa9.84□□□□□ -0.83
SF3A3-202ENST00000460925 BCANQ96GW7 911 aa9.84□□□□□ -0.83
SF3A3-202ENST00000460925 DNAJC5Q9H3Z4 198 aa9.83□□□□□ -0.84
SF3A3-202ENST00000460925 CHGAP10645 457 aaKnown RBP9.82□□□□□ -0.84
SF3A3-202ENST00000460925 CFAP44Q96MT7 982 aa9.82□□□□□ -0.84
SF3A3-202ENST00000460925 HS6ST3Q8IZP7 471 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms